Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_08880 LG2 11895957 11899108 PREDICTED: cyclic dof factor 3-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/T 11896027 5_prime_UTR_variant
G/T 11896277 stop_gained p.Gly49*
C/T 11896490 intron_variant
G/A 11896902 intron_variant
G/C 11896903 intron_variant
G/T 11897040 intron_variant
C/G 11897048 intron_variant
T/A 11897081 intron_variant
A/T 11897096 intron_variant
C/T 11897213 intron_variant
T/G 11897538 missense_variant p.Ser92Ala
C/A 11897605 stop_gained p.Ser114*
A/T 11897608 missense_variant p.Lys115Ile
A/G 11897643 missense_variant p.Thr127Ala
G/T 11897652 missense_variant p.Val130Phe
G/A 11897670 missense_variant p.Asp136Asn
T/C 11897967 synonymous_variant p.Leu235Leu
A/G 11897977 missense_variant p.Asn238Ser
A/T 11898464 missense_variant p.Glu400Asp
C/T 11898465 missense_variant p.Pro401Ser
C/T 11898877 3_prime_UTR_variant
C/T,A 11898939 3_prime_UTR_variant
T/G 11899098 3_prime_UTR_variant
G/A 11899108 splice_region_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_08880.1
MLENKDPAIRLFGQKIAFSGEPDAPTIAAAHTPSPPPPVDYVRDAEEEGEEEVDDDVADSEAEDDDNKDKDPAEEVSEKTKEADLPLNAADSNNTAEGLQNPNTPSIDEESAKSKSNKSENDQTDPTTTVSATETDNSLDNNNKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSASHYRHITISEALQAARIDSPNATHLLKPNGRVLSFGIDPPICDSMASVLNLAEKKTRNGFHSMEDQRNKDDDCSSASSITVSNEESGKSTSQESLVPNNNSFLHHHHHHVPCISTVPWAYPWNSGVPSAPAMCPPGFPMSFYPHAFWNIPWFPTHHAAPAPRSPGSGPNSPTLGKHSRDDDLAKQEHVREEPSRQRNGSVLVPKTLRIDDPSEAAKSSIWATLGIKNECVSGGGMFKGFQSKKEEKKDRVIETSPVLRANPAALSRSLNFHENS*


CDS Sequence:
>Vu_08880.1
ATGCTCGAAAATAAGGACCCTGCAATTAGGCTCTTCGGCCAGAAGATTGCCTTTTCCGGAGAACCCGACGCTCCGACCATTGCCGCCGCTCACACCCCCTCGCCACCGCCGCCGGTGGATTATGTCAGAGACGCAGAAGAAGAAGGAGAAGAAGAAGTAGATGACGACGTTGCTGACTCAGAGGCTGAAGATGATGACAACAAAGACAAGGATCCTGCAGAAGAAGTTAGTGAGAAAACGAAAGAAGCTGATCTTCCTCTAAATGCTGCAGACTCTAATAACACCGCAGAGGGTCTTCAGAATCCAAACACACCTTCCATAGACGAAGAATCTGCAAAGTCAAAATCCAACAAGTCAGAAAACGATCAAACCGATCCAACCACAACAGTTTCTGCTACTGAAACCGACAACTCACTAGACAACAACAATAAAACGCTGAAAAAACCAGACAAAATTCTTCCATGTCCTCGCTGCAATAGCATGGACACCAAATTCTGTTACTACAACAACTACAATGTGAACCAGCCACGTTACTTCTGCAAAGCGTGCCAAAGGTACTGGACCGCCGGGGGCACCATGCGAAACGTGCCGGTGGGTGCAGGGAGGAGAAAGAACAAAAACTCAGCCTCTCACTATCGCCATATCACAATCTCTGAAGCACTTCAAGCTGCAAGAATCGATTCCCCAAACGCGACTCATCTTTTGAAGCCCAATGGGAGAGTCCTCAGCTTTGGTATAGACCCTCCAATTTGTGATTCCATGGCATCAGTCCTGAACCTCGCGGAGAAGAAAACGAGAAACGGGTTTCACTCCATGGAGGATCAGAGAAACAAAGATGATGACTGCTCGAGTGCATCATCCATCACCGTTTCCAATGAAGAAAGTGGGAAAAGCACGTCACAAGAATCATTGGTGCCTAACAACAACAGTTTCCTACATCATCATCATCACCATGTTCCGTGCATCTCCACCGTTCCTTGGGCTTATCCTTGGAACTCCGGGGTTCCCTCAGCACCTGCTATGTGCCCTCCAGGGTTTCCCATGTCATTTTACCCTCATGCATTTTGGAACATTCCATGGTTTCCCACACACCATGCTGCCCCAGCTCCAAGGTCTCCGGGTTCTGGTCCAAATTCTCCCACTCTCGGGAAACACTCCAGGGACGATGACTTGGCGAAGCAAGAGCACGTCCGCGAGGAACCCTCGAGGCAGAGAAACGGGTCTGTTTTGGTGCCCAAAACTTTGAGAATCGATGACCCCAGTGAGGCAGCCAAGAGTTCAATATGGGCAACTTTAGGGATCAAGAACGAGTGTGTGAGTGGGGGTGGCATGTTCAAGGGGTTCCAATCAAAGAAAGAAGAGAAAAAAGACCGTGTCATTGAAACCTCTCCTGTGTTGAGGGCCAACCCTGCAGCCTTGTCAAGATCCCTTAACTTTCACGAGAACTCTTGA


Promoter Sequence:
>Vu_08880::LG2:11893957-11895957(+)
GAATTATCAGAGAAACATCAATAAATAAATATGAATTCAATTTTTTTTCATTTTGATTTAAATAATAAATCAACTATATCATTTTCTTATATAGCTTTCCATAAATCTAATCCTTCTGAATAAGTTATAACTTCTACAAATCATAACTATTTCTTTCATTAAATATAAAATAACAATTTGTGAAAAATTTTCCTTATATTCTATCGGTCTTGTAAGAACATCATCCTACGGTTGAGATTTTAGAACTTTTAAAAATATGATAGATATAAAAGATTTCTTAAAAAAATGATTTAAATAAAAAAATCAAATAAATATTCTCAACAAAATTCTTTCCAGGAACATATATTAATAATTTAAAGAGCTTGAATACTTGTATTATATATAATATTTTAGATTAAAAAGTGATAAGTAAGTGATTGTATACGCTACTTATATTAATAAATTAATTAAAGTGTTTTAGGCATGGCAAATAGAGTTGGAGTTAGACAAAGGGATATAAAGTTGAGCCTTTTATTTGACACTTGTTGTGCATATAACTATATATATATATATATATATATATATATATATATATATATATATATATATATATTCTTTTGCTAAGTGAGTTGTTGCAGGAATTTTGTTTATTTTCAAGTAAATTAATGAACGCAAAATATGATTACGCTTCTTTCAATATCACGGAATAATCTTATTTGTTCTCAATAGCGACATCTTATTGCCTTTGCAATAACATCAAATAGCCAACTCTATTAACTATTAATTTATTTCGCTTTTTTATTGGTTTTAACACTTTTTTGGGGTTTTGGGTTCTCTCCTAACTGCCAACCCTATTAATTTAACTCCTGGTATAGAATCAGCATATACAATACCATAATATGACACTATTTTTTTTTTCTCTTAATTAAATATTATGAAAGAAGCTAAAAAGTCTCAAAAGAGATTATTGAGAATTAAAAAGAGATAGCATGTAATCACTTTTTCTTTCTTTCTTTTCACACTTCTAAAATTTGTATCTGTTTGCATTTTTCATGAATAAATTTTTAACTACAGTGTTACGACTTTTTTATTATCACTTTTTAAGTAAAAAGAATTCTTTTCATCTCAACAGTTTTGGTAAAAACATATATTAAATGTTAACATGCATTATTGAGATAAATAATTTACTTTTTACATACTCACACTGTCAATATAAAATTTTATCCTTATCAATCAATTGAAAAACATTTTAAATATATTTTATTAATTATCATTAGCGATTTATATACGGAAAAGATAAAAAGCCTTCTACACCAACTCTCTATTAGGGATAAAGTCTACGGAATTAGCATGAAATTTTAGATTTTAGCTCCAACGTTGCCAATGTTGAACAAAAAATATTAAATTCTACAATAAACCATTTTTCAATACACTCTAAAGTAAAAATACACCTTTCTTTTAAAAAAGTTAATAGTATATATTCTTTTATTATTCTAAAACATTTAAATTTTGATTTAATCGTCCGCTTTTTTTCTCTTCAATTTTAAAATGTGTAGTTTTTGTTCTCCAAATGCTAACTAAAACCATTTTTTGTTTTCAAATTATTTTTCTGAAGGAAAGATGTATTTCAAAATTAAAAAAAGCTAAAAGTAAAAGAATAAAATGGGACTGAAATAATAATTTATTAAAAGCAATAATACAATCATGTTCAATTTATTTATTAAATTTTTGACAGAGAGAGGGAAGAAGTCCATGTAGCGTAGTTTTGGTTGGACAATATTATGAACAAAGCAACCAATAAAAATGTTTCACGAAGGCTAAAACTGCGGTACCCTCGATGAAGACGCTGACGTGGCGGCGAGTGGGGTGCACAGAAAGAGAGTGCAACTCAGAGAATCAAACACTTGAAAAGAAAATCTATTCCAAGCCACAAAAACTTGTGGCCATGAATCAAAACCCCTCTGTGACGTGGCACCCTGCACTCGTTTAAACGGATCAAAATCCACCTCGTCCTGCTTCCA


Gene Sequence:
>Vu_08880(+)
ATTGCCAACTTTCATCAAAACCCAAACCTCAAAAAAACCGAACACACTGTAACAGACACAACACCTGCAGCAGTAGAAGTAACCAACCACCCTGCTTCAATCATAACACACGTAAACCTAACACAGACCACCTCGCGCGTTTTCCTTTGTGTCGTTGCCGTTTCAATTCTCAGAAAATGCTCGAAAATAAGGACCCTGCAATTAGGCTCTTCGGCCAGAAGATTGCCTTTTCCGGAGAACCCGACGCTCCGACCATTGCCGCCGCTCACACCCCCTCGCCACCGCCGCCGGTGGATTATGTCAGAGACGCAGAAGAAGAAGGAGAAGAAGAAGTAGATGACGACGTTGCTGACTCAGAGGCTGAAGATGATGACAACAAAGACAAGGTAACGTGATTAACAGCACCTAGGTTCTAACAATTCATGGGTCGGTTCCTTTTTCAGTTCGGGTGCCAAAGTTTCCCTCTTTTCAAATTCTTCCCCAGTAATTCTTTTCTGCATCAAGTTTTTCTGTATTGGTTTTCGAATGTAAAACGGTTTTGTGTGCGTTTTTTATTTTTATTTTTATTTTTTTAAAATATTAGTTCATAATTTTGTTTTGGATTTTGAAATTTAGGATTATTATATTTTGTCTGGGGTTGCTTATTTTTCGGTTTTTGTGTATGGGATCTGGACTTCAGAAACAGAGTGCTCGAAGCAGAGTCGATTGTAAAATACATAGAATTTTTGTATTCAGTTGCAAAACCGAGCTAATTTCATGTTTTGTGCATCCTTCCCTTATTTAGAAGGGGAAGTGAGTTTTGTTTTTTTATCTGTAATTTTCTGAGTTTTTTTTTTCATTTTAGAACTGATTCAATATGCCCGAGTAACCTGGGCATTTAATTTTAGGTCAAATTGTTTTTCTTGTTGAGTAAACTGACTGGTGGAGCAGTTTTTTTGTGAACACGGTTAACTTTTAGTCCACTCATACTGCAAGTCAAATATTTCTGCTAATAATCTACCATCTGAGTTCAAAGCACCAATTTTCACTTTTAGACTTTTCTTAGCTGAGATATAACGTTTTTCACTCGTAATAATCTACTAAGGTAGCTTCTTCAATTCCAGAATTTATAAAAGGATTGTTGCTTTCATCATCTTCGTACCTGTCGTGTTCTAGAAAACATATGTTTACATCGCGAAATAGAACAACTTTCAATGGGTAAATTCATTGGTCCTGTTCGAATTACATGCTTTTCTTCATCAGTGAAGAAAACCTACCCTATACACCAAACACAGATACATTTTTTGTTTTAAAAATGGAGCAACAGAATGTTTTTACTTTTCTCCTACCTTCTTGATCTTGTGGTTGGAGTTATTTATGTCATTTGCGAGTGAGTACATCTTAGTAAAACGGTACGAACATGACAAAAACAAAATTTTGACCTCCTAACTCTGTGAATCAGCTTGTGTTTGCTTGTTGTTACTCGTTATCCCAAAGTATGCATTTCATTAATTAAGAAAAACACTGGCAAATTTTTAGGATCCTGCAGAAGAAGTTAGTGAGAAAACGAAAGAAGCTGATCTTCCTCTAAATGCTGCAGACTCTAATAACACCGCAGAGGGTCTTCAGAATCCAAACACACCTTCCATAGACGAAGAATCTGCAAAGTCAAAATCCAACAAGTCAGAAAACGATCAAACCGATCCAACCACAACAGTTTCTGCTACTGAAACCGACAACTCACTAGACAACAACAATAAAACGCTGAAAAAACCAGACAAAATTCTTCCATGTCCTCGCTGCAATAGCATGGACACCAAATTCTGTTACTACAACAACTACAATGTGAACCAGCCACGTTACTTCTGCAAAGCGTGCCAAAGGTACTGGACCGCCGGGGGCACCATGCGAAACGTGCCGGTGGGTGCAGGGAGGAGAAAGAACAAAAACTCAGCCTCTCACTATCGCCATATCACAATCTCTGAAGCACTTCAAGCTGCAAGAATCGATTCCCCAAACGCGACTCATCTTTTGAAGCCCAATGGGAGAGTCCTCAGCTTTGGTATAGACCCTCCAATTTGTGATTCCATGGCATCAGTCCTGAACCTCGCGGAGAAGAAAACGAGAAACGGGTTTCACTCCATGGAGGATCAGAGAAACAAAGATGATGACTGCTCGAGTGCATCATCCATCACCGTTTCCAATGAAGAAAGTGGGAAAAGCACGTCACAAGAATCATTGGTGCCTAACAACAACAGTTTCCTACATCATCATCATCACCATGTTCCGTGCATCTCCACCGTTCCTTGGGCTTATCCTTGGAACTCCGGGGTTCCCTCAGCACCTGCTATGTGCCCTCCAGGGTTTCCCATGTCATTTTACCCTCATGCATTTTGGAACATTCCATGGTTTCCCACACACCATGCTGCCCCAGCTCCAAGGTCTCCGGGTTCTGGTCCAAATTCTCCCACTCTCGGGAAACACTCCAGGGACGATGACTTGGCGAAGCAAGAGCACGTCCGCGAGGAACCCTCGAGGCAGAGAAACGGGTCTGTTTTGGTGCCCAAAACTTTGAGAATCGATGACCCCAGTGAGGCAGCCAAGAGTTCAATATGGGCAACTTTAGGGATCAAGAACGAGTGTGTGAGTGGGGGTGGCATGTTCAAGGGGTTCCAATCAAAGAAAGAAGAGAAAAAAGACCGTGTCATTGAAACCTCTCCTGTGTTGAGGGCCAACCCTGCAGCCTTGTCAAGATCCCTTAACTTTCACGAGAACTCTTGATTCAGTCAGCAGTTACAATAAAAACAGAAGAAGAGCAACCTTGGTAGGAGACGGTGACCATCTTTCAGCAATGGGAGTTTGGACATGAAGCGAAGGTTGGTAGTCTCTGATTTGGTCAGCATCGGTAGGAGGAACTAATCTACCAGGAGGGTTTAGTTGGCGGAGCTGGGAAGTCGCAACTAATTTCTCTCTTTCATGTCAGTAACACTATATATTTTTTTTCCCTTTTTATGTACTTAGTTTGGTGAGTTTGAGTTGATGTACATATATATAAATATATGTGAAAATACTTGCTAGAGATGGAAAAAGGTCTTTACCATGTATAAAAATTCAGAGCTAGTGTATTTTGATCTTTCATATGAAAATGGAAAATGAGACTGCTTCTGTTTTTG