Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_08877 LG2 11851529 11852704 protein RKD1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus
Molecular Function   enables   DNA-binding transcription factor activity
SNP Position Effect Amino acid change
G/C 11851664 upstream_gene_variant
G/A 11851668 upstream_gene_variant
C/T 11851698 upstream_gene_variant
A/G 11851757 missense_variant p.Met44Val
T/C 11851843 synonymous_variant p.Cys72Cys
T/G 11851884 upstream_gene_variant
C/T 11851885 upstream_gene_variant
T/C 11851903 upstream_gene_variant
A/G 11851927 upstream_gene_variant
T/C 11851982 stop_lost p.Ter86Glnext*?
A/T 11852018 missense_variant p.Ser98Cys
G/C 11852061 missense_variant p.Arg112Pro
C/G 11852066 missense_variant p.Arg114Gly
A/T 11852241 missense_variant p.Gln172Leu
T/A 11852300 stop_lost p.Ter192Lysext*?
T/A 11852376 upstream_gene_variant
A/G 11852386 upstream_gene_variant
G/A 11852524 synonymous_variant p.Glu217Glu
G/A 11852545 synonymous_variant p.Glu224Glu
A/G 11852617 synonymous_variant p.Lys248Lys

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_08877.1
MENQQLTFWNSNYQIDENSFAPTCQFSSYDYFRGNASDGFHWPYEFPLQDSYFDVVPFMKCYYPHDILYETLSLEPTPLSFQDYDFSDVKNVLSAWNEVDVSDHKPAFSSSNDGGSVNETMAEVKGKQHREERISSSARMLSRKTVSQYFYMPISQAAKELNVGLTHLKKRCRELGIQRWPHRKLMSLQTLIKNMQEQVQAEGPENDEKIRTAIDMLEKEKSMVEEKPDLELEDKTRRLRQACFKANYKKRKLMSMTFMESNLPLMPYATSIDKRGE*


CDS Sequence:
>Vu_08877.1
ATGGAGAATCAGCAACTCACGTTTTGGAATTCTAATTATCAAATTGATGAAAACTCATTCGCACCAACGTGCCAATTTTCTTCTTATGATTATTTCAGAGGTAATGCCAGTGATGGGTTTCATTGGCCCTATGAATTTCCTCTGCAAGATAGCTATTTTGATGTTGTCCCATTCATGAAGTGTTATTATCCCCATGACATTTTATACGAAACTTTGTCGCTTGAACCAACCCCACTAAGTTTTCAAGACTATGACTTTAGTGATGTTAAAAACGTGCTTTCTGCGTGGAACGAAGTTGACGTTTCAGATCATAAACCTGCGTTTTCATCAAGCAACGATGGCGGAAGTGTGAATGAGACGATGGCAGAAGTGAAGGGAAAACAACACAGAGAAGAGAGAATTAGTAGCAGTGCGAGAATGCTGTCAAGGAAAACCGTTTCTCAGTACTTCTACATGCCTATATCACAGGCTGCTAAAGAGCTTAACGTTGGTCTCACACACTTGAAGAAAAGGTGCAGAGAATTAGGTATTCAAAGGTGGCCACATAGGAAGCTAATGAGTCTGCAAACCCTTATTAAGAACATGCAAGAGCAAGTACAGGCTGAGGGGCCTGAAAATGATGAAAAAATAAGGACTGCCATTGATATGTTGGAGAAAGAAAAGAGCATGGTGGAGGAAAAACCAGATTTGGAACTTGAAGATAAAACAAGAAGGCTTAGACAAGCTTGTTTCAAGGCTAACTACAAAAAGAGGAAACTCATGAGCATGACTTTCATGGAATCCAATCTTCCCTTGATGCCCTATGCCACAAGTATTGACAAAAGGGGTGAATAA


Promoter Sequence:
>Vu_08877::LG2:11849529-11851529(+)
TAATCAATTCTTAATGATTCTCAGAGAGATTTTACAATTTCATTCTCAACATTCTTCATTATTCTCTATCTCTATTTATTTGTTCTTGAACATATTTGTCTATTATTTTATTTTTTTGCCAATCCATATACTTATCTATGTATTTTTATATGAAATAAAAAAATTATAATATATAAAACACTATTAAAGATAAGTATATACAAAAGAATAAGTTAAAACAATAAATCTTAGTTCTAGTTGTTAAGAAAATAAACTCCATCATACACTTATAATAGGTTGAAGTCTCAAGTCTCTTTCTCTTCTTCAGTAAATGCTTAAATTTAATTTCCAAATTTCAATTTTTTCATGAATCTGCACAATTTATTTTGAAATTAATTATTAATAAAATAATTCAAAAAAAATATTGTGAAGATCAATCACACAATTGATCAAGATTTGTTAGCTAATTAATATTTTAATAATCACTCATAATATTTTAATTAAATTTTATTCTCAAACATAATTTTACAATTAATTTAACAGAGATATATTAATACTATTTTTTTAAAGAGCTTTCTCTTAGAAGATCCTAAGCAATTCCTTTATTTTTTGGACCTTAATTCTAATATCCATAATATAATTTATAAATTGATATTTATTAATTAGTTAGTAATCTTTCAAGTTTAAGACTTAACAATTTGATTATATTTTTATAATACCAAGTTATAATTATAAGACATGGAGGAGTAGTGTGGTGGCTTATTGGCATAGAAAAGCTTCAAATTGAATGAAAATGGAAGAGTTCATTGAGTGAAAACACGAAAATGAAGGTTTTGGGAAACAAGGAAAAGAAAAGAAAGGTGTGCATTTGAGGATTGACATGGGTTTTAAAAGGATAATATCAATTGCTTACAAACAATGTGAAAGCCAATTAGAAAACACAATGAACCAATGTAATATGGTTGTCTGTGTAAAATTTACATCGATTAATTCTACCATTGATTATTTAATATTTATCCACACTTATTAAAATCTGTCACTAGGATTTTGTCTACAATGGTTGCACCAAAATCAATTTTATTTATCCATGTAAAATAAACTTTTTTTTTTCACTGGAAAACATTTGATAATCTTTAGCATAGAGTTTTTGGAAGATTAAAATATCAGAAAAACTTAAACTTCAATCTATCTAAACCAATCCGATACTCATCTTCTCAAATCTTCACCATAATGCCCTCTCTCTTCCAACTTCACGCAAATATTACATACCTTCCAAATTTTTTCTTAAACTATACTAAGGCTCTTATTATTGTTTTGAAATTTACCCAAATATTTTCTTTATAAAACCTTACTTTGTTACCTTTTTTTTAATTACATATGCACCTGTTAAATTTTAAAAATATTACACTTGCACTCCCTAATAACAACTAATAAGAGAGATAATTGTAATAGTAAAAAAAGTAGGATATAGCTGTAATATGATAAATTTTCAAAGGAATATCTTTGTAATTTATTCTCTTATTACTATCATTATTTAAAGAAATATCATAAGTTAACTATTATAAGAACTACTTTATTTTATGAACGAAATAACTGCCTTATCTCTTGATAGTTATTTTAAGAATTTTATAAAAAATACAAAAAGTGAATTTAAAGATAATTTACTCACTGTTTTAATAACATTGAATGCTACTTTAATGTAATTAAGTTAATTAAATTTAATTAAGTCTGATCAAACGGCCATAGAAAAATCATGTTTATACGAACGGTGATAAATTTACAATATATAATAATATATTTAAGATTATGCAGAATTAATAACCAGGTATATCTTGGTAATTGAATTCATCTTGTAACTCATACTATCGCACACGTTAAACAATAAATCATTCGGCCGCACATTCTTCCATAAAATTAATTACCACACTACTTTCATTCATTCATCATTATCATTAAAATTCCAATATATATTGCCGATTTCTCTGCTCATTCCACAGTATACTATGGTGTCAACGAAGACA


Gene Sequence:
>Vu_08877(+)
ATGGAGAATCAGCAACTCACGTTTTGGAATTCTAATTATCAAATTGATGAAAACTCATTCGCACCAACGTGCCAATTTTCTTCTTATGATTATTTCAGGTTAAGAAACTTGTCTGCTTTCCCTTACTTTATTTCTGTACGCTTTTGAGTTTCCATGTAAGAAAAAGTTACCATGTTAGCATCTTTAATTTCTGCAGAGGTAATGCCAGTGATGGGTTTCATTGGCCCTATGAATTTCCTCTGCAAGATAGCTATTTTGATGTTGTCCCATTCATGAAGTGTTATTATCCCCATGACATTTTATACGAAACTTTGTCGCTTGAACCAACCCCACTAAGTTTTCAAGGTTGTAAGTATCAGCATCAGTTTTTTCAATGTGTATGCAACCATCCATTGTTCATGTTCTTGTTTTGATTTATTATATCTTCTGAGTTGCTGGTGCAGACTATGACTTTAGTGATGTTAAAAACGTGCTTTCTGCGTGGAACGAAGTTGACGTTTCAGATCATAAACCTGCGTTTTCATCAAGCAACGATGGCGGAAGTGTGAATGAGACGATGGCAGAAGTGAAGGGAAAACAACACAGAGAAGAGAGAATTAGTAGCAGTGCGAGAATGCTGTCAAGGAAAACCGTTTCTCAGTACTTCTACATGCCTATATCACAGGCTGCTAAAGAGCTTAACGTTGGTCTCACACACTTGAAGAAAAGGTGCAGAGAATTAGGTATTCAAAGGTGGCCACATAGGAAGCTAATGAGTCTGCAAACCCTTATTAAGAACATGCAAGTAAGATCTCACTCTTTGAATTGCCAATAAGTTCAATGTTTTAAACTGCATTTCCAGTGGCTATTTTTTTGCAAAAGATGATTTATACTTGTTCATTACTACTACTATTATTATTATTATTATAGTGAATTGGGTGGGTGACGCAGGAGCAAGTACAGGCTGAGGGGCCTGAAAATGATGAAAAAATAAGGACTGCCATTGATATGTTGGAGAAAGAAAAGAGCATGGTGGAGGAAAAACCAGATTTGGAACTTGAAGATAAAACAAGAAGGCTTAGACAAGCTTGTTTCAAGGCTAACTACAAAAAGAGGAAACTCATGAGCATGACTTTCATGGAATCCAATCTTCCCTTGATGCCCTATGCCACAAGTATTGACAAAAGGGGTGAATAA