Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_08871	LG2	11768204	11768476	mini zinc finger protein 3-like	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of meristem development, regulation of transcription, DNA-templated
Cellular Component	is active in	nucleus
Cellular Component	located in	nucleus, cytoplasm, extracellular region
Molecular Function	enables	protein binding, DNA-binding transcription factor activity, protein binding, protein binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, protein binding, protein binding, protein binding, protein homodimerization activity, protein binding

SNP	Position	Effect	Amino acid change
G/A	11768251	synonymous_variant	p.Ser16Ser

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_08871.1

MKKRQVVLKRDVANTSSSVTRNVRYGECQKNHAANIGGYAVDGCREFMASTGDGGGGALTCAACGCHRNFHRREVQTEVVCEYSPPNSAR*

CDS Sequence:
>Vu_08871.1

ATGAAGAAGAGACAGGTGGTGCTGAAAAGAGATGTGGCCAACACTTCGTCTTCAGTGACCAGAAATGTAAGATATGGAGAGTGCCAGAAGAATCATGCAGCGAATATTGGAGGGTATGCTGTGGATGGTTGCAGGGAGTTCATGGCTAGTACAGGGGATGGAGGTGGTGGGGCTCTTACATGCGCTGCTTGTGGCTGCCACAGGAACTTTCACAGAAGGGAAGTGCAAACTGAGGTAGTATGTGAGTACTCTCCTCCTAATTCTGCTCGCTAA

Promoter Sequence:
>Vu_08871::LG2:11766204-11768204(+)

GCATTAATACTGAATGTCATATCCATATCCTAATCACATAAGAAATCAGATTCCCATATTACAGTGAGATTGATGAGGAAGTTGCTTTTGGAAGTGGAGATTAGGCAAATACGAATTTATAATTGATTGTTATAACGTAAACTACGAGCACGCTTGTGATTGACAAGCACATGTGTCTTTGTCCCTTGTCACTTTCTCTAATGTGCACATGTTATTGCCCCAATGTGTGCTTGTCCCTTTCTAGTTCTTCACTTTGATATGGCGTTGGTGGAGGCTCCTCATGCCTTCTTGTGTATGTATTACTCATGACCTAAGTGAACAATCCAGACCTTTCAAAATCAAACTTGTCTATGGCATTTCTATTCTTCTTCCCCCACCAAATTCCCCATCCAATAATATCAAGGTTTCAAAAAAAATGCATTGTGTAAATCAGCCGCTTTTCACTTCAGCAATCTCTTTGTCTGTCTATTTTGTTCTTCTTCACTTCCTTCTATATATGTTCGCAAAAGCATGGTGTAAACGTAAACTACTCATATCAGGATCTGTGCAGGGAACGACACGTACTTTTCAACTAGCCAATAGGAGAAATCCCAAGTTTTACTCGCAATGACTTAAAACAAGGAAAAAACTAAAGGAATCTGGTGTGTGTAGACATACACAGTGCCCTTTTGTTTTGGCTAGCTTTGATGATGGCCAGATAGTTCAAGAGCATATCAATGATGTTGAAATTTTGTAAAGTTATGATTGTCCTTGATTTGATCCAAGGGAAAGAAGAAAAGGGTGGTCATTCATGTATGAGTGTGGGGAATGGTCTTATACCTATTAGAATCTTAGGTAATTAGACAAGAGTTGTTGTCACAGTTGCAAGCAGGGCCACCGCAACCTTCCTTTTAAGTATCAAATCGGACCCACTGCAGATATAAAATTAGCATCTACCCTTTGGTTGGTAACTCTGCTTAAACAGCTTAATCAATTAGTTTGACCAAAAAAGCAGCTTCACTGCACTGTCACCATGTCTATTTATTGATTTTTGATTAACTACCCATGTAAAATATATTGGCATAGTCAAGGTTGTCTTTTTTTTTCAAAAAGATATGTAACAAAATAAAATTATATATTCTCATTTTTTTTCTTTATTGATTTATCAGTCCTTTTGAGACAGGTGAGCTATCAATTCTGCAAGACCATTCTAGGGTTGTATGGTTAATGTAAGGACAAGTATTCCCTCCTTTACTTCCTATATTAAGTTTTGTCCGGTTCTCAATCTGAGGGCACCACAATGAGGTATGGAGACTTTTCTTCACTTATACTTCTAAAAGCAACGGATGATCATTGTGTAAACATACTTCTACCTTTCTCTAGCATCATAACCAACTAAGAACCCCACCATTTCCTCTTGGGTGACGTGTTGTGACTTTATTGGCCTAGAGAACAATAATACTTTAGACAAAACTTGGATAAAGTTGTGTACATGCTGGTGATGTTGTTCTCGAATAAAAAAATAACATGTGTATTATATTCTTTCGTCATCTCATCTTCCTTTCTTATGTTTTTTATGTGGTTGTGAGGGGTAAAAATATAATACATGTAATTTCAGAATGGATTATGTAAGTCCCTGTCTTGATACTTTAGGGACCAAGTGTTCCCATGTGCGTGTCTTTGTAGTCCTCAGTTGAAATACATGAGCACCAAAAAGTTGGTAAAATAAGGCTGCTCAATACCTCAAGAACCATCATGACCTTTATTTCCATCTTTTGTTCCTAGTGCTTTACCCAAATATGCCACTCACAAATTTACACACTAGGGTTAGGGTTAGTCACCAGCAAGCACTGACTTATAAATAGAGCTAGAGCTATCTCTGGTGTAATCATCATCCGGCATTTCGATTTGCTTGGATTTCATATTCTGGGTGAAACCATAAACTGATTGGAACCCAAATCAAACCTAGACAGAAAGTCAAACATAGAGATCAAGCTTATTAGGGTTTTTCGGATTGAGCA

Gene Sequence:

>Vu_08871(+)