Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_08849 LG2 11423390 11424306 PREDICTED: transcription factor PRE3-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of timing of transition from vegetative to reproductive phase, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, photomorphogenesis, photomorphogenesis
Cellular Component   located in   nucleus
Molecular Function   enables   protein binding, protein dimerization activity, protein binding, protein binding, protein binding, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
A/T,* 11423595 downstream_gene_variant
T/A 11423599 downstream_gene_variant
G/A 11423712 downstream_gene_variant
C/A 11423715 downstream_gene_variant
T/C 11423806 downstream_gene_variant
C/G 11423826 downstream_gene_variant
A/T 11423865 downstream_gene_variant
G/A 11423916 downstream_gene_variant
G/C 11423924 downstream_gene_variant
T/G 11424008 downstream_gene_variant
G/A 11424131 downstream_gene_variant
A/G 11424159 downstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_08849.1
MSSRRSRSRQTGTSRNITDDQINDLVSKLQQLLPEIRERRSDKVSASKVLQETCNYIKSLHREVDDLSERLSELLATTDTAQAAIIRNLLMQ*


CDS Sequence:
>Vu_08849.1
ATGTCTAGCAGAAGGTCACGGTCAAGGCAAACAGGTACTTCAAGGAATATCACCGATGATCAGATCAACGATCTTGTCTCCAAGTTGCAACAGCTTCTTCCAGAGATACGTGAGAGGCGCTCTGACAAGGTTTCAGCTTCGAAGGTGTTGCAAGAGACATGCAACTATATTAAAAGCTTACACAGGGAAGTGGACGACCTAAGCGAGCGTTTGTCTGAACTCTTGGCTACAACTGACACTGCACAAGCTGCAATAATTAGAAATTTACTTATGCAATAG


Promoter Sequence:
>Vu_08849::LG2:11424306-11426306(-)
CACTTTAACTTTTTTTTTTATCATAAAATTTATCTCTATTTATGACAAATTATTTATTGGTTGAGGTATAAGTTCGATCTGTGTACTAAATCGGCTGCCAAATATAACTTTTGTTGTGAATTAAGATACACTCTTACTGTGGTATGTACCCTTTTTTTTCTTTATTGATGAATACTCGTTTTCACGTGGTCAAATACTCCTCTTTATTATTTTTACTTCTTTTATTTTCCTTTTCTCGGACAATGCTTTTTGTTTCCTTTTTTCTTTCTTTCTTCCTCTAGCTATCCGCCATTGTTATTCCTTCACAACTCTTCTTTCATTATATTCTTAAGCATAACCATTGACTTAAGAGAGAAAACGTTCATAAAGTGTCAAATAATCGATGGAAGCAAGAAGAGAAACGAGGGATATTTGACAAAAAAGAACAATAAATAATCAAGGTGACATGTGTTCAACAATATGCTTATTCTGCTTACATATGCTTCATTAGAGTTCTTTCTTAACTTTTTTATATGATATTTATTTCTTGCGCTCACAAACTAAAAAACTACCCCATACGTGATCATTTTGCTTGGGATTAATTTTGAATAAATAATCTCATATTCCTTTAAAACTCAATAAATTGTTAAGATTATGCATAAAACCAGACAGTACATACTTAAATAATTTGTTTTTCATTTCTTTCATTTCTAATGCATCCATTCAAACTACTACTGGCAGGAAGAAAACAATTTTAAGAGGGACTACAAGATAATACTCTTCAAAAAAACTATCATTATGCAGAGGGTATCTGGGGTGTTTGTGCATCAAACGTCTCAATTCATGACAAAATTTCAGCCTCCTTAATAAGGGTTTGAGGAATTAATAATGCACGAGCTTTAACCAACACTCATCATTATAAGACGATGAGAACTAGTTTTCTGCTTTCTAATATCCAAAAGTTTCTAATCTTAATCCACATTTTACATATAAGCCAGTAAATTGTAAAGCATCAGTAATTTGTTGTGATGAGTGTGTGTTTTTGTGATAAAACATGAGAAATGTAATGACAGTATCTCAAACACAGTTACGGCTATCAAAATAGAGTGATTCCTGAAAAGGCTGGAAGATCATCATGTCCTTGTTTAAGCAATCAAAAACATCGATGGAGAGAGTTTAGATTGACTAGTCAACTCAAGTTCTGGGTGATCACGTTACCCTAATTTGCTGTTCCCCCATTTTGTCTACCCATTATTTTATTGTCCCTTATAAATAATATTTATAAAGATCTTGGATGAAACTTTACACTGCTGCTAATGCTGGTTAATCATTTGCTTATTTTAATAAGTGACCTCACTCGCAGCTCACACAACTATGTGGGCATTATAGGAAAAAGACCCTTTAAGATTTTGCTAAACAGGTTGCAAGCTATTGTATGAAACCTGCTGCACACCCAACAATATAATATCATTTTTTTGCACTATGGCATTGTTGGAAATCTTTAGATAACATGGTATTGCGTGTAGAGGCTGACACACCGAGAAGGTTGAAAACAAAAGAACAAAGCTTTCTTTCTCTCTCTCTCTCTCTCTCCATTGTTCATTTTCTCTCACTTGAAACATGCACAGGCAACTCTGAAACTTCTAACTCCAATTTAGGAACACTCTTGGATGATGATATTATAGCATATCTCTAGAAACTTGATTCTTCTCTCTCTCTCCAAAACCCTATTTAAAGATAACCATAGACCTCTTCTTTCTCCCATGCATTACTTGTCTTGATTTCATTCTCGATCCCCAACATCACAGGCTATTCTACACACTCTACAACCCCACCTTCCTCCATTCTTTTTTTACTACTTAATTTACTTCTCCCATCTCTATAACCATTTTCAAATTCTCAACCGCCACTAGCTTTGTTTCATAACTGATTGTTTTACCAACTCATTAAAAACATATTGGTGGCTATAGGATTCTCAAATTAGACCTAAAAGTTCTTGTTTTATTTATATATTATATAAG


Gene Sequence:
>Vu_08849(-)
ATGTCTAGCAGAAGGTCACGGTCAAGGCAAACAGGTACTTCAAGGAATATCACCGATGATCAGATCAACGATCTTGTCTCCAAGTTGCAACAGCTTCTTCCAGAGATACGTGAGAGGCGCTCTGACAAGGTTCATTATATACATTTGTCTTTTTTCTGTGTTCTATAAGATTCTTCCTCTTTCTATGTTTAACTCCACATTCACATTTACTTTTTCTCTAATTAAGTTCTACGAGTTAATTAGTTAACCATGATGTTGGTTTATATTGCTGTAGCTTTCAGGAATCATACTCCAATTGAGTGAACCATGATTTTCATTATGAGCTGATTTTGTTATTTTGATAAACATAATATTTTACCTAGATATTCTTAATTAGGATAAACAACATGGCGAGATAATTATCAAGTTGAATATGTTTTCATGAAACTTTTGAAATAGTTCTTTCTTCAAATTAAATCTACATTTTGATAATTTTGAATCGCATCTGGTTTTCATGCAGCATTTGAAAGTTCCTTATCTGTCTTAAATGGATGAAAAATTATTCGAAGTAGGACGTTAATTAGTAATAATACCGTTTTAGAGTATATAAATGACCGTAAATTTCATTTTAATATTGAAAGGTCTTATGTCTTAAATGGATGAAAAATAAAAGGAAAAACAAATCTGACATAAAATGTTATAGAAAATATATGTTATGAAATTTGATAAAAATATATATATATATAATAGAAGTGTTTTGATAAAGAGGAAATTTTGAATGCATTCAGGTTTCAGCTTCGAAGGTGTTGCAAGAGACATGCAACTATATTAAAAGCTTACACAGGGAAGTGGACGACCTAAGCGAGCGTTTGTCTGAACTCTTGGCTACAACTGACACTGCACAAGCTGCAATAATTAGAAATTTACTTATGCAATAG