Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_08843	LG2	11331912	11333507	PREDICTED: zinc finger protein ZAT4-like	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	located in	nucleus
Molecular Function	enables	DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
C/G	11332136	synonymous_variant	p.Leu75Leu
G/C	11332289	missense_variant	p.Gln126His
G/A	11332377	missense_variant	p.Asp156Asn
G/T	11332420	missense_variant	p.Arg170Met
G/T	11332432	missense_variant	p.Arg174Met
C/G	11332456	missense_variant	p.Ser182Cys
T/A	11332457	synonymous_variant	p.Ser182Ser
A/G	11332565	synonymous_variant	p.Ser218Ser
T/C	11332568	synonymous_variant	p.Phe219Phe
G/C	11332679	missense_variant	p.Trp256Cys
C/A	11332688	synonymous_variant	p.Gly259Gly
T/G	11332912	missense_variant	p.Ile334Ser
G/T	11333105	synonymous_variant	p.Leu398Leu
C/T	11333318	synonymous_variant	p.Asn469Asn

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_08843.1

MEEDQEVKHSCKFCSKSFPCGRSLGGHMRSHVTNVSSETEKVSSFNNNNGGDRDRDRETGIMGSEGGTSNGGYGLRENPKKTWRFTNSVDDTLLVLDKLCKECGKGFHSWKALFGHMKCHSERVSQNNSSLMEDQDSWTENTNASQKMVSDDSHSDNEATAPNRRRRSRRRRTRYVAPSTSSVSFVSEAEQEQEEVAMSLMMLSRDVSPWCGLSSVNSFHFESPLVPTNLDSKAEGKRVVSNDSENKVTKPKDMKWDFGNLDASYLNSKGKISSELDKKAELDTDSAFEDNGIDDNRNNKYTSIKAKYLDSELKASSSKSWVKNKSPEVELSKISNKRGKFECATCKKIFHSYQALGGHRASHKKIKGCFASRNESSENSTDLEADLSPDPTTESKLLKKEYVEEHEMVTVTTTTTTTGFDNEEERERDLKKGKVHECPICLKVFPSGQALGGHKRSHHLPNGSDIARNCQSQRVVLGREDPEIRDFFDLNLPASTEEEGNSHGHAEPYKPWWVVGGSSHKQEALIGLISN*

CDS Sequence:
>Vu_08843.1

ATGGAAGAAGATCAAGAAGTGAAGCACTCGTGCAAGTTCTGCAGCAAGAGCTTCCCTTGTGGGAGATCCTTAGGAGGTCACATGAGGTCACACGTCACCAATGTTTCATCCGAGACAGAGAAAGTTTCGTCTTTCAACAACAACAATGGTGGAGATAGAGATAGAGATAGAGAGACGGGAATAATGGGTTCTGAAGGGGGAACTAGCAATGGAGGGTATGGTCTCAGAGAGAACCCGAAGAAGACTTGGAGGTTCACGAATTCCGTTGATGACACTTTGTTGGTGTTGGACAAGTTGTGCAAGGAGTGTGGCAAAGGCTTTCACTCTTGGAAAGCTCTGTTTGGTCACATGAAGTGCCACTCCGAGAGAGTATCCCAGAACAACAGCAGCTTGATGGAGGATCAAGATTCGTGGACAGAAAATACCAATGCTAGCCAGAAGATGGTGTCGGATGATAGCCACTCCGACAATGAAGCCACTGCTCCAAACCGTAGGAGAAGATCCAGGAGGAGAAGGACAAGGTACGTGGCTCCATCAACTTCTTCTGTGTCCTTTGTTTCTGAGGCAGAGCAGGAGCAGGAAGAGGTTGCCATGAGTTTGATGATGCTTAGCAGGGATGTTAGTCCTTGGTGTGGTCTCAGTTCTGTGAACTCATTTCATTTTGAATCTCCTTTGGTTCCAACCAATTTAGATTCCAAGGCTGAAGGCAAGAGGGTTGTCTCCAATGATTCTGAAAATAAGGTTACCAAACCAAAGGATATGAAGTGGGATTTTGGCAATTTGGATGCTTCATATCTCAACTCCAAAGGAAAAATAAGCTCAGAACTTGATAAGAAGGCCGAGCTTGATACTGATTCTGCATTTGAGGACAATGGAATAGATGATAATAGAAATAATAAGTACACTTCAATCAAGGCAAAGTATTTGGATTCTGAATTGAAGGCTAGTTCTTCAAAGAGTTGGGTGAAGAACAAGTCCCCAGAAGTTGAATTGAGCAAAATCTCAAACAAGAGAGGAAAATTTGAGTGTGCTACTTGCAAGAAAATCTTCCACTCATACCAAGCACTCGGAGGTCACAGAGCTAGTCACAAGAAGATCAAGGGATGCTTTGCTTCAAGAAATGAGAGCAGTGAAAACAGCACTGACTTGGAAGCAGACCTCTCCCCTGATCCAACAACAGAAAGTAAGCTCCTGAAGAAGGAATATGTGGAAGAACATGAAATGGTTACTGTTACTACTACTACTACTACTACTGGTTTTGACAATGAGGAAGAGAGAGAGAGAGATTTGAAAAAGGGGAAAGTTCATGAGTGCCCAATTTGCCTCAAGGTTTTTCCATCTGGACAAGCCTTGGGTGGTCACAAGAGATCTCATCACTTGCCTAATGGGTCTGATATTGCTAGAAACTGTCAAAGTCAAAGAGTTGTACTTGGGAGAGAAGACCCAGAAATTAGGGACTTTTTTGATCTTAATCTTCCTGCTTCTACAGAGGAAGAAGGTAACAGCCATGGCCATGCTGAGCCTTACAAACCTTGGTGGGTAGTAGGAGGCAGCAGCCACAAGCAAGAGGCACTGATAGGCCTCATTTCTAACTAA

Promoter Sequence:
>Vu_08843::LG2:11329912-11331912(+)

ATAAGAGTGTAGTATGTGATTCAACCATATTTTACATTGTCATCAGATAATGTTTTTTTTTCCCTCATCAAAGAACCTTAATTAAAACAATGATCAGAATTAACTTACCACAGTAAAACTTGAAATTTAATTTCAGTGGGTGTGACTTTTACATTGAAGATAACCTAAGGGTAAATTCTATTTATTAGGAAGAATCTAAGGGTGAAAGAAAACAAGAGAAGAACCAGATGAACATCATTGGATTTAACAAAATTCGGCTCAGAATTAGTAAATTACTTTGCTTTCTGCACTGATTTAAGCTCGAAGGAAACATATCTGCTTTATAAGTTTCATCATTGTAATAAACTACAACACCTTTACAATGCACCAGAAGACAAAAACATCACAGCAATGTTGTTTGCAAGCAGTTAAAAAGCTTTTGAAACAGCAAAATAGGTACAAGTTTAAAGTTGCTTAGGACTATATATATATATATATATATATATATATATACTTGAGGGTGACCAAAAGGGATCAAAGTGCCCAACTGGCTTAACTAGGAGCCATTAACACTCCTCTAATGGATAACATCTCCATATTCTTGTCAGCATCCAATATCCAATTTTGGAAAATTTAGCTTTATAAATTGACCCTTAGGCATTTACAATGTTTTTACATAGACAATTCCAAAAGGGCATTGAAAGATAAAAAGAAAAAGATGAAAGACACAACACTCTTGGACTCAAATAAATGTGCCAGATTTCAGCTGCATTACTTAACCAGCTCACCTTGTACCTGGCTTATGTTTTGGTGGCATGGCTCAGTTCAGCTATAGGTGCAACCATAAAATGAACGTTATATTTATGAACAAGAAGTCATAAAATAAAATATCAGACAACCCCACTTGATTATGACCCACCAATCCAAATTTTGCTTTACCAAATTGGCCTTGAAATATGCCTTACTCAATCCCAGTGGAGAATCAAGAAAACAGTGGCATTTGACAGACTTGTGTCAGAAGAGGAAGGTTTACCCTACACTTTCTAACACTTGGTTTATTAATGTATTATGCATGTTGAATGGAATTAGATGGAGGACCCACATGAAAAATCTGTTGTAAATCCGACAAATAAGAAAACATCAGAGTAATAGAAAGTCCAGAAGAATAACGGTCAGAGAGAAGAACCTTTCACTTCTTTCACTTGAAGTGTTTTTAGCATTAGTACATATATAGAGAAGAAAGAAAAGAAGCATTTCCTTAATGGCAAGACAAAGGAAGGAATAGTTGGAAATGCAGTTAGTTTGAGCAGGTTCCTGAGCCAATTGGTTGCTGACGTGGAGGAATCTGAGGCCGTTGGATGAAGGGGTGGCGTAAGATCCTCAGTTGAGTACACGTGCTGTCCCTCTCCCTTTACCACCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTTTCCTTTTTTTTTTGTTTTTTAATCTTTGCTTCCATGCATGGATTTCTCCTCCTAATATAGTGAAGTTTAGAGAGAGAATTGGAGAAACAAACGCTCACTCACTCACTCACTCTTGTTTGTTCTTTTCTCCCTTGGCTTCCTCATCCATCATCGCTATCATTAGCAACAAAGGTAACACGCACAACTCCTCTCCATCTCTTCAAAGTTTGATTTTTTCTTCAAAATTCAACTTCCCAAAGGACACGAGCTACTACTGCTGGTGCTAGTATTCTCAAGAAGCTTTCTAGTTTATATAGTTTACCATACTACACCACGTTCTCTTGTCCCTTTTGTTTTCCTCTTTTTCTGAGTTAGATCTTGCACTCACCTTTCAATTTTTTCGTGAAACCAGACATGGGGTTTCTCTTGTTCTTCTCTCCCACCGCTTCCAAGATACTATGCTGATCTGGGGTCTTGCTATTTCTCGCTGTGATCCTCTCCTCTTGTGTTGATGATCAAGAAGTGAGTTGGTTTGCCTTTGTTTGCTGATCCCTGCGTGTGTGTGTGTTCGGTTTCTTGAAAATCCAA

Gene Sequence:

>Vu_08843(+)