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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_08745 LG2 9988276 9989628 putative receptor-like protein kinase
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Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/G 9988416 synonymous_variant p.Ala47Ala
T/A 9988796 intron_variant
T/C 9988914 intron_variant
T/A 9989046 intron_variant
T/C 9989085 intron_variant
A/T 9989091 intron_variant
G/A 9989214 intron_variant
A/G 9989473 missense_variant p.Arg256Gly
T/A 9989483 missense_variant p.Leu259His
T/A 9989484 synonymous_variant p.Leu259Leu
C/T 9989574 synonymous_variant p.Asp289Asp

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_08745.1
MDERRQNIISAVSVIALVILIIVARVTLKLSKGFFLIFGAGVVVILAVFAYVLLSKRFNRRRRLLESQLKSEGRELRMEYSFLKKVAGVPIKFRYKELEEATDGFQALIGRGASASVFKGILNDGTSVAVKRIDGEERGEKEFRSEVAAIASVHHVNLVISEAPWWVLAVEFKAKSKRKCQYFPKIVNEKVREGKVMEIVDPRLLEGGSVDERQVKTLVYVALWCVQQKPRSRPSMAQVVDMLEGRVRVELPPDTRMVLVDFLCVDDSATDSSSLQRLDLISNRRTESDVECSSTYSHATTVLSGR*


CDS Sequence:
>Vu_08745.1
ATGGATGAAAGGAGACAGAATATAATCTCTGCTGTATCAGTGATTGCACTGGTTATTCTCATAATTGTTGCTCGTGTCACGTTGAAGCTCTCAAAGGGCTTCTTCCTTATATTTGGTGCCGGTGTTGTTGTTATTCTTGCAGTCTTTGCTTATGTTCTCCTCAGCAAAAGGTTCAACCGCAGGAGGAGGCTATTGGAGTCACAGTTGAAATCCGAAGGCCGAGAACTTCGCATGGAGTACAGTTTCTTGAAGAAAGTTGCCGGCGTTCCCATTAAGTTCAGATACAAGGAGCTTGAGGAAGCCACAGATGGGTTTCAGGCACTGATTGGAAGAGGTGCTTCTGCTTCAGTTTTCAAAGGTATTCTCAATGATGGCACTTCGGTTGCCGTCAAACGAATCGATGGAGAGGAAAGAGGGGAGAAGGAGTTCAGATCAGAGGTTGCAGCCATAGCTAGTGTGCACCATGTGAACCTGGTTATCTCAGAGGCGCCTTGGTGGGTGCTTGCCGTGGAATTTAAGGCCAAGTCCAAAAGAAAATGCCAGTACTTTCCTAAGATTGTGAATGAGAAAGTGAGGGAAGGTAAAGTCATGGAAATTGTTGATCCTAGGTTGTTGGAAGGTGGGAGTGTTGATGAGAGGCAGGTAAAGACACTGGTTTATGTTGCTTTGTGGTGTGTGCAACAGAAGCCAAGATCAAGGCCTAGCATGGCCCAAGTTGTTGATATGCTTGAAGGGCGTGTGAGGGTAGAACTTCCACCTGATACCAGAATGGTTCTTGTTGATTTTCTGTGTGTGGATGACAGTGCAACAGATAGCAGTAGCTTGCAAAGGTTGGACCTTATATCAAATCGAAGAACAGAAAGCGACGTGGAGTGTTCATCTACCTACTCCCATGCTACCACTGTTTTGTCTGGAAGATAG


Promoter Sequence:
>Vu_08745::LG2:9986276-9988276(+)
TTTACACTATTTTCAACAAGTAACTCAAAATTTTGGTGATGACAAATAATACCATGTTTTGATATATTTAACAACTTTGTTAAGCGTGAATCAATCTAAGATTGTTTTTGGTCTTATGAACAACCAACAAAGAAGCAAAAATCAGATGAGATGTGTTACATGTGTATTTTGCTTCTTAAATTTATAAGTATGTGATCAATAAATCATCTAATAGAAAAAAGTATATATTACATTATTTTTGTAAATAAGAAATCATTTTGGAGATAGACATCTTGTGATTGAGATAATTTTTTTTTCTTATATAAATAAAAAACATAACTATAATGTGATGATATTAAATTTAAATTATTACTATTGTATTTTATAGTATGATTGTTTATATATCATGAAAAACTCGCTAATCAATGACACATTTTGTTCGTTGATAATAGAAAAAATTAGTCCGTAATTCAAGTTTATTGACAAATCGTCAACAGTAAAAAAATAGTTGATAAATTGTACTGATGGATAAAAAAATCCGTCAATAACTACTGATGACAATATTAGTTGGTAATTATTTACTGTGTAAAATTCGTGATAAATATTCATCTATAATTATCCACAAAATTTAATCGTAAGTAAAATTTGATGGTAAATACCACAATTCAATATTGTTTTTTATTCTCTTTTTCTTTTTTTTTCTTCTTCTTCCTTCTCTCTCCCGCACCTTCCTCCTCCATTGATGTCATTACATCATCGCATCGTTGTTGCATCTCCACCACCGACTTCAACTACTCCTTCTATTCTTCTTCATTCTCTTCCTTCCTCTTTTCTTTCCCTTCTTCTTCTCACCCATCTGATTTAATTTATAATACAAATGTGATCAAATTTAACAATAATTTTACCATTTTTTTTACTGATGAATTCATTGACAAAAAAATTTGTCAATAATAAAAATTATAAATTTCTAACAAATTTTACCAATAAATTTTAAAAAATTTGGTCAAAACTCATAATAAAAAGTGTCATTTTTTTATCGACGAAATTTATCAATAAATAAATTCATTAATAATAATAATTAATATTTACTAACAGAATTTACGGAATGATAATTATCGACAAATTCATTACTAAATTATATTTTCATTACTAATTAAAATTTTAAAATTTGGGAACAAAATATATCTTAAATTTGATTTTATTATTTGATTTATTTTTATCAGGTCATCAATAATTACAAAACTTTTTATAGTGATATATATATATATATATATATATATATATATATATATATATATATATATATAATGTGTGACTAATTGACATTTAAAAAGTAAATTTTATATTATTTAATTAAGGGGAACTAAAATACATTTTTTTCTAATTAACATAAAAAAATTGACGATAAAAAATTTCAAATAGAACAAAACACAGGGGTGGCATAAATTTAAAGTATGTATAAATATTTCTTAAGTGTGCAAAACGGGCCGAACTTCCTTTCAAATCAAGAGCAGTTTGGAATTCAACCGTAAGCGGAATTAACTCCAAATCTTGTCGGTTTTTCTGAGTATTGCATATTTATAAATCAAACCAAATACATTACATAAATTTAGAATTTTCAATTCATGAAAAGAATTAACAACGTTGAGCTATGTAAATTATTGGAGATTATTATAATGTCGAACTACCAAACAAAAAAAATTATTTTTTGACGTAAACTATTGGAGATTATTTGCCCTTAAAGCAAGTGAGACAGCAATGAACTTCAATATCTTGATTGATTCTAATCTATTTGAATACATTATAAACTATCCAATATTTTAATTTTTGGCTATTTTGAAGATGGAAATGGTCACCCTTTGCCTTCTCTTTCGTAACCATTTCAAAGAAGAAAAAAAATCATATCTTTTTACTGCACTCACAAGCAAAACTGCTGATCGAATCAACAACTGGGTTCTCAGATTTCCAAAGGTGGAAAAACATTGAGGCTGTTATGTTATGCTTCTTCAGTGAAGCTATGA


Gene Sequence:
>Vu_08745(+)
ATGGATGAAAGGAGACAGAATATAATCTCTGCTGTATCAGTGATTGCACTGGTTATTCTCATAATTGTTGCTCGTGTCACGTTGAAGCTCTCAAAGGGCTTCTTCCTTATATTTGGTGCCGGTGTTGTTGTTATTCTTGCAGTCTTTGCTTATGTTCTCCTCAGCAAAAGGTTCAACCGCAGGAGGAGGCTATTGGAGTCACAGTTGAAATCCGAAGGCCGAGAACTTCGCATGGAGTACAGTTTCTTGAAGAAAGTTGCCGGCGTTCCCATTAAGTTCAGATACAAGGAGCTTGAGGAAGCCACAGATGGGTTTCAGGCACTGATTGGAAGAGGTGCTTCTGCTTCAGTTTTCAAAGGTATTCTCAATGATGGCACTTCGGTTGCCGTCAAACGAATCGATGGAGAGGAAAGAGGGGAGAAGGAGTTCAGATCAGAGGTTGCAGCCATAGCTAGTGTGCACCATGTGAACCTGGTGAGGCTGTTGGGCTACTGTAATGCTCCGACAGCACCTAGGTACCTTGTTTATGAATATGTCTCAAATGGGTCTTTGGATTGTTGGATTTTTCCCAAAAGGTTATCTCAGAGGCGCCTTGGTGGGTGCTTGCCGTGGAATTTAAGGTACAAAGTTGCCATTGATGTTGCCAAGGGACTTGCTTATCTTCACCATGATTGCAGGTCAAAGATCTTGCACCTTGACGTAAAGCCAGAAAATATACTGTTGGACGAGAATTATAGAGCACTTGTTTCAGATTTTGGTTTGGCAAAGCTTTTTGGAAAGGATGAAAGCCAAAAGGTTGTGTCTGCCATTAGAGGAACAAGAGGGTACTTGGCACCTGAGTGGCTCTTAGAGCAAGGTATTTCGGATAAGACAGACATATATAGTTATGGGATGGTTCTTCTGGAGATTGTCGGAGGCAGAAAAAACGTTTGCTTCGTGGATGATGTAAAGGCCAAGTCCAAAAGAAAATGCCAGTACTTTCCTAAGATTGTGAATGAGAAAGTGAGGGAAGGTAAAGTCATGGAAATTGTTGATCCTAGGTTGTTGGAAGGTGGGAGTGTTGATGAGAGGCAGGTAAAGACACTGGTTTATGTTGCTTTGTGGTGTGTGCAACAGAAGCCAAGATCAAGGCCTAGCATGGCCCAAGTTGTTGATATGCTTGAAGGGCGTGTGAGGGTAGAACTTCCACCTGATACCAGAATGGTTCTTGTTGATTTTCTGTGTGTGGATGACAGTGCAACAGATAGCAGTAGCTTGCAAAGGTTGGACCTTATATCAAATCGAAGAACAGAAAGCGACGTGGAGTGTTCATCTACCTACTCCCATGCTACCACTGTTTTGTCTGGAAGATAG

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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