Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_08724	LG2	9752452	9753543	hypothetical protein	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
T/C	9752462	missense_variant	p.His361Arg
C/T	9752467	synonymous_variant	p.Ala359Ala
A/G	9752523	missense_variant	p.Tyr341His
G/A	9752543	missense_variant	p.Pro334Leu
G/T	9752621	missense_variant	p.Thr308Asn
C/G	9752796	missense_variant	p.Ala250Pro
C/G,*	9752868	missense_variant	p.Val226Leu
C/G	9752869	missense_variant	p.Arg225Ser
T/A	9752871	missense_variant	p.Arg225Trp
G/A	9752917	synonymous_variant	p.Asn209Asn
T/C,A	9752919	missense_variant	p.Asn209Tyr
C/G	9752926	synonymous_variant	p.Gly206Gly
C/T	9752950	synonymous_variant	p.Val198Val
C/T	9753013	synonymous_variant	p.Lys177Lys
T/C	9753019	synonymous_variant	p.Glu175Glu
A/C	9753029	missense_variant	p.Leu172Arg
C/T	9753040	synonymous_variant	p.Glu168Glu
C/A,T	9753061	synonymous_variant	p.Leu161Leu
G/A	9753063	synonymous_variant	p.Leu161Leu
G/A	9753099	synonymous_variant	p.Leu149Leu
C/A	9753105	missense_variant	p.Asp147Tyr
C/T	9753129	missense_variant	p.Ala139Thr
G/T	9753144	missense_variant	p.Leu134Ile
A/C	9753268	synonymous_variant	p.Pro92Pro
C/G	9753347	missense_variant	p.Arg66Pro
G/T	9753395	missense_variant	p.Pro50His
G/T	9753429	missense_variant	p.Pro39Thr

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_08724.1

MQSQTSDTFPSHCENETISCYDPAFYYTRPFSIHSESNPTWKQENNTDLPPLSFFHFPSPPFEDSRISLQQHHDFLLPFHHNPPPQNPDPQPVSLSVETSAKKNIQTPRKRLGKRDRHSKISTAGGLRDRRMRLSLDVARRFFGLQDMLGFDKASKTVEWLLNQAKAEINRLAKEKKKQKKSVHRSCCSAGSECEEGVSSLDEVAGSRNEEEAGEERVDKVMKRRVKHSRKIGAFHPLARECRERARERARERTREKMRSRGLAEESKPCREEENQNLIQLGSWKPSETGEEFVTKSHGLHPSLDVITEGKEHSYHAKEHDDDDSLVILSKWSPSLIFNNYGFSHEVSLNWCFLDNFLAHHIT*

CDS Sequence:
>Vu_08724.1

ATGCAATCTCAAACTTCTGATACGTTTCCCTCTCACTGTGAAAATGAAACAATTTCCTGCTATGACCCGGCATTTTACTACACCAGACCCTTTTCCATTCACTCTGAAAGCAACCCAACATGGAAACAAGAAAACAACACTGACCTTCCTCCTTTGTCCTTTTTCCACTTTCCTTCTCCTCCCTTTGAAGACTCTCGTATTTCCCTCCAACAACACCACGATTTCCTCCTTCCGTTTCACCATAACCCTCCACCTCAAAACCCCGACCCTCAACCTGTTAGTCTTTCCGTGGAGACTTCTGCTAAGAAGAATATCCAAACCCCCAGAAAAAGACTTGGCAAGAGAGATAGACACAGCAAGATCAGCACCGCAGGGGGACTGAGGGATAGGAGAATGAGACTTTCCCTTGATGTTGCAAGGAGGTTTTTCGGTTTGCAAGATATGCTGGGCTTTGACAAAGCTAGCAAGACCGTGGAGTGGCTGCTGAACCAAGCAAAAGCTGAGATCAATCGTCTAGCGAAGGAAAAAAAGAAGCAGAAGAAGAGTGTTCACCGCAGTTGCTGCAGTGCTGGTTCGGAATGTGAAGAAGGTGTGTCCAGTCTTGATGAGGTTGCAGGGAGTAGAAACGAAGAAGAAGCAGGAGAAGAGAGAGTGGACAAAGTGATGAAGAGAAGGGTTAAGCATTCTAGGAAGATCGGTGCATTCCATCCTCTTGCAAGGGAGTGCAGGGAAAGGGCAAGAGAGAGGGCAAGAGAGAGGACAAGAGAAAAGATGAGAAGTCGTGGCCTGGCTGAAGAATCAAAGCCATGTAGAGAGGAAGAAAATCAAAATCTAATCCAATTGGGTTCTTGGAAACCCTCAGAAACTGGAGAAGAATTTGTTACCAAGAGCCACGGTTTGCATCCTTCCTTGGACGTGATCACTGAGGGTAAAGAACACAGCTACCACGCAAAGGAGCATGATGATGATGATTCTTTGGTTATTTTGAGCAAATGGAGCCCCTCCTTGATCTTCAATAACTATGGATTCTCTCACGAAGTAAGTCTCAATTGGTGTTTCCTAGATAACTTCCTTGCGCACCACATTACTTAG

Promoter Sequence:
>Vu_08724::LG2:9753543-9755543(-)

AAAATCAGAAGGGGAAGGAGGATTTCACAGTGAATTAAAATCTACAGAAAAGGAAACCAAAATCATCCACCCAAAATTGTTAGCCTGAAGCGAGAACAAAGAACCCAAAAGAAATCTCCAAACGACAACCTCGTCGCAACATGCAGAGGCCCTCTCCACGAAACACAGAAGCTCTTGCCGCGCCTCCGTTGCGCTTCAGTCGCGCCTTCGTATTCACCCCACAAAGCCTCTCCGTATGCGCGAGCCATGGATAGGTTTCTCAAGGTTGGGTGGTCAGCGAGATTAGAGAGGAGAAGAAGCTTGAAGCTTCGATTACGGAATCAAAACGAAAAGGAGGAAGGGGACCTATTGTCCGTGAGAGAGGCACCAAAAAGAAACTTTGGGGAAAAAAGTTTGAGTTGCGTAAATCAGATTTAGGGTTCACTTGTATTAGATTTAGAATTTTATTAATAGTAATTTAAAGAAATTCTAATCAATTATAATTAAAGAATTTAATTAGGATTAATAGGAAACCCTCAACCTTAATTAATTACACTTAAGGAAAACTTCCTTCTTCCTTTGTTCTTCTAATGTTTTTTTTCTTTTTATTTAAAGTTATTGAAATTCAAAGAATGTTTTTTAAATTAAAAATCATTTGAGTGTACGTAATGAAGTCTTTATGTCTACGTAATCATTTAGGTTCAAAGTATGTGTCTCACATTAAACACCGTCACAAAATTTAACGGCAGAAACCTTATTGATTCAATTTTACGTAAAAAGGGATCCAATTCAGCTATTTCAAAATAGGGAGACCTAATTGACGCAAATCTGCAGAAATAGAGATCTCCGAATCAATTAAACCTTTCTTTTTCAGAAACCATAAAGTAATGAAAATTTTTGGACATGAGAGAAAGAGAGGACTGTAACTAGGAAAGAAGAAGAAGAATGAAAGTAAAAGAAGAAGAAAAGAGAAGAGAAAAAGAAGGATACAGATAAAAGGGTAAAAGAAGAAAAAGAAAGAGAGAAGATACAGAGAAAGGGATAAAAGAAGAAGAAAAAAGAGAAAAAAAAATAGGTTCTTATATACGACTTAGTTTAATTATTATCAATATTAACAATTTTAATACAAATTAATAGTCATGTTCTAACAACTTCATTCCAAAACATTTACAAAAGTTATCAAAAGCTTTGATAATTTTAACTTTTTTAAATTTTATAAAAAAGTTATTATAACTCTTGACCACTTCATTAAATCGTGAGAATTCATGAAAATTTATTTTAAATTTATAAAAAAAATAAAATTATTCTATTTTTGTAATTATGGATTAGTACCTTAGTTTTGACTCTTTCAGAATACAAAAACTACACATTCTCTTTACAGCCTTTTAAAACGGGAAACACCCCCGATAAGTTAGAACTTTATTATAAAATTCTAAACGTTATACATGAAAGGCATATTGAAATATTTGTAAACCTATAGATATGTCTTTTTATATAAAGATAATATCTAAAATAGAGCCTGAGAATTGTGTGGGACAAAGCATGAAAATGTAGTGATGCAATGTGGTAGAGTATATAGCAAACGAAAGGTGATTGGAGAGGATGAAGTGAAGTGGGGCTATGAGTGAGTGAGTGAGTGATGTGATGAGGAGGTACAAAGGAGGGAGAGGTGGAGCTGAGTTAGTTGCCTTTAGTTCCCTGTCAACTCGCACATGACCACCACGTGAAGTGCTACAACTTTCAACTTCTTCCATCCACTCATTTCTTCCCTTTCATATTTCATCCTAAACACCTTCTAGCTTTATAAACCAAACATTATCAAAACTAAACAAACCTACCTTCTTTCTCTTCTCTTCCTCTTCTTTACCCTTCTCTCTCTCATAAGTTACTGTTTCTCCTGTCTTTCTCAAACTGCAGTACTACCCTCATCAATATGTTCATTCTTCACCCTCACACATACGTCTTAATTACCTCCTCCAAAGGCTTGTAGGGTTACTCCAACACTCAGGAGAGACTGCACT

Gene Sequence:

>Vu_08724(-)