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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_08421 LG2 5907715 5908985 hypothetical protein LR48
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/G 5907750 missense_variant p.Gln336His
C/T 5907929 missense_variant p.Val277Met
T/G 5908048 missense_variant p.His237Pro
G/C 5908335 missense_variant p.Cys180Trp
C/T 5908336 missense_variant p.Cys180Tyr
G/A 5908352 missense_variant p.Leu175Phe
G/A 5908362 synonymous_variant p.Ile171Ile
C/G 5908424 missense_variant p.Val151Leu
T/A 5908550 missense_variant p.Arg109Trp
T/C 5908968 synonymous_variant p.Arg6Arg

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_08421.1
MNGRNRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIKRSYFDSPLSSRLLPNQPQHFGWNYLQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTPSTNTNASTQQPISSITKLNTLSPLASSESHQHHPPHYTSFLYHHPPSSRSFEDNSAPLFLDTGSCSQSNADCRSRYAYGEKEEVDEHAFFTEPCGIMKSFSASSMDDSWQLTPLAMSSSSSSTKQRSSFGLSNDYSCLQLQSHSKQHEQQDQGGCYMLGGGQLGKEEPQKTVHRFFDEWPHKGRQGSWLDLDDKSSTTQLSISIPTSSHDFPAFSSRTHHGNC*


CDS Sequence:
>Vu_08421.1
ATGAATGGGAGGAACAGATTTCCCTTCACCCCATCACAGTGGCAAGAGCTTGAACATCAAGCTCTCATCTACAAGTACATGGCTTCGGGAATTTCCATTCCACCTGATCTTCTCTTCACAATAAAAAGGAGCTACTTTGATTCCCCTCTGTCATCGAGGCTTTTGCCTAACCAGCCACAGCACTTTGGATGGAACTACCTGCAGATGGGTCTGGGGAGAAAGATAGACCCTGAGCCTGGTAGGTGTAGAAGAACTGATGGTAAGAAATGGAGATGCTCCAAAGAGGCATACCCGGATTCAAAGTACTGTGAGAGGCACATGCACAGAGGGAAAAATCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACACCATCAACAAACACAAATGCTTCAACTCAACAACCAATCTCATCTATCACCAAACTCAATACTCTTTCTCCTCTTGCATCGTCTGAATCACACCAACACCACCCTCCACACTATACCTCCTTTCTCTATCACCACCCTCCATCGTCAAGGTCCTTTGAAGACAACAGTGCTCCCTTGTTTCTTGACACTGGCTCTTGCTCTCAGTCCAACGCAGATTGCAGGAGTAGGTATGCATACGGAGAGAAGGAAGAGGTGGATGAGCACGCTTTCTTCACAGAGCCGTGTGGTATAATGAAAAGCTTTTCTGCTTCCTCTATGGATGATTCTTGGCAACTCACACCATTGGCCATGAGCTCCTCTTCTTCTTCCACCAAACAGAGGAGTTCCTTTGGCTTGTCCAATGATTATTCTTGCCTGCAACTTCAGAGCCACTCAAAGCAGCACGAGCAACAAGATCAGGGTGGTTGCTACATGCTAGGTGGAGGCCAACTTGGAAAAGAAGAGCCTCAGAAAACCGTTCATCGCTTCTTTGATGAATGGCCCCACAAAGGTAGACAAGGATCTTGGCTCGATTTGGATGACAAATCTTCCACAACCCAACTTTCAATTTCCATTCCCACCTCTTCTCACGATTTTCCAGCCTTCAGTTCCAGAACCCACCATGGTAATTGCTGA


Promoter Sequence:
>Vu_08421::LG2:5908985-5910985(-)
ATTTAATGTACACACGTCAACACTCCTTACTAATGAAAAAAAATCATTACAACAGGAGACTAACACGATTTATATTGATACCGCTTTACTTATTCATTACTGTTTTTTTTTATGTTTATGTTTGAGCTATTATTAACAAGATTGTATATTAAAAAGTGTCACTTTTTCTGTTATCTATTACCTTTGTATATTACTATTATTTTTATTTGTCTAATACGGTCCATCAACCACTAATTTTAAGCCCCATTAAACCCAATTATCTTATAATAATTCTTAAAATTTATAGTTTGGATTTGATTAGTGGAACTGGCAAGTTGAATTTATAATAATAATAGTTATTATTATTATTATTATAGATGTTTATTAGGTTAGAGTAGATGTGCCAAATAGATAGCACGTGGTTTCTACAATTAACTTGACTAATTAATTTATAATGGTCCTGAAACGCAAACAACCCTGCGTTGTGGCATGTTCATATTGTTATAGTAAAGAGAAAAAAGATAGTTCACCATGTGCCCACTGTCTCCAATATTGCTCTTCACTTCATAACTTAAATGTAGAATCAAGATCTCAACCACTCTCGTATTAGGCTATAAAAGGGGACCAAAATTCAAAACTATTTTTTATATATTTTTTTTTGTAAATTTTTACTTTTAAAATGTTCACGAATTACTTTTAACCAATAAAATAATTAATTCTATTTTTTATATCAGAAAACAAGTTCATGTAAAAAGACTACTATAGTAACAATATGCTTTCAAGACTTTTGCATATTTTTAAAGCGTAACTTGCTTGTAGAGTTGTGGTTGCACGTGCAGGTCGGAGATCGTAGGTATAGGAGTATTTTATTTTAATTTATAGATATACGAAGAAGATTAATTAATTGTTATTAATATATGGATAATGATATTTTAATAATATTATTTATGTATTATTTTGAAATTAGTTATATTAGTGGTTATGATTATTATTATTAATTTTAAAATAATTTTAAATTAATCATAAATCATACTGAAGTGTTGTAAAAAAAATATAAACAAATATTATTATCTTAATTTATACATATTGAAGATAAAATCGGTGAAGTATTATTAATGAACGAGAGAGAAGAAAAAGTACAGAGGTATTAAAAATGCAGGGTGCAGGTGAATGTCTGGTTTTCTACGTTTGGAAAATGAGAAAAAGGTGAAAATGTAAGTGGTGGGGGGTGTGTGAGGTAAAGGAACAGAAAAAGTAAAAGAGTTTAGTAGCAGTAAAAGCTGTGAAGCGTAGTACAATGTTCTGAGATAGGCATTGCATTGGGTTCAGACACTCTAATACTATTAATAAATACCAATAATAAGTATTTCCTCTTTTGTTTTTATGCCCTTTTTCTTTCTCTCTCCCTTTAGTTTATGGATTTCCGTAGATGTGTCAGAGACAATAGCTGCCACAGAGACAGCTTAGCTGCACAAGCACCAGAACCTCTGCACTAGCAGCAGAGCAGCAGAACAGCAGCAGCATCAGTAGCATCAGACACAGAGAGATGAGAGAGAATTCTCAAATCTCCATCATACCACTCTCTAATCAAAACCATTACTTTTATCCATCCACACAAGATTCTCTAACCATGCTCATCCCTCATGCTCATCTCATGCTCATGCTCCCTTAAATAAATATACCTCCTCTTCTCTCCCAACCCCTATTCTCTAATATTAATAATACTCATCACCACTCTCTTTCTCTTTCTCTTTTCTCTCACATACAAACATTTTCATCTCTGCATTTTTAGTTTTTAATTCTACCATTATGGTTTATTCAGACTACAATTACATCTTTCTGTTCTTTTCTTCTGCATGTTATCAGTTTTTCAAACCGGCGTTGCTTTGAAACAAGTATAGTTTTCATGACACTTTTTTTTTCTCTCTCTGGTGCTTTTGTATACATATATATTATATATACAGCTTCCCTTTGGTCTGCATATTTCTATTTCCCTCTTGTTCTACTCTTCTTGCTTGACG


Gene Sequence:
>Vu_08421(-)
ATGAATGGGAGGAACAGATTTCCCTTCACCCCATCACAGTGGCAAGAGCTTGAACATCAAGCTCTCATCTACAAGTACATGGCTTCGGGAATTTCCATTCCACCTGATCTTCTCTTCACAATAAAAAGGAGCTACTTTGATTCCCCTCTGTCATCGAGGCTTTTGCCTAACCAGCCACAGCACTGTGAGTTTTTGCTTTTTTATCTTTCTGTGTCTCTCTTTTTCTGTGTCACTGTGTTTGTTTGTTTGTTGGGAGAGTGCAAATCTTTGACAAAAAGGGTTGGTTTGTGCAGTTGGATGGAACTACCTGCAGATGGGTCTGGGGAGAAAGATAGACCCTGAGCCTGGTAGGTGTAGAAGAACTGATGGTAAGAAATGGAGATGCTCCAAAGAGGCATACCCGGATTCAAAGTACTGTGAGAGGCACATGCACAGAGGGAAAAATCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACACCATCAACAAACACAAATGCTTCAACTCAACAACCAATCTCATCTATCACCAAACTCAATACTCTTTCTCCTCTTGCATCGTCTGAATCACACCAACACCACCCTCCACACTATACCTCCTTTCTCTATCACCACCCTCCATCGTCAAGGTCCTTTGAAGACAACAGTGCTCCCTTGTTTCTTGACACTGGCTCTTGCTCTCAGTCCAACGCAGATTGCAGGTTTCTGTCATTTTCACAATCACACTGCTTAAACTTAAAAGCACTTTCTTCAAGTGTCTGAGTCCTGATTCATTTACTCTCTCTCTCCCTTACTTTTTTCTTAATAAAATTAAAGGAGTAGGTATGCATACGGAGAGAAGGAAGAGGTGGATGAGCACGCTTTCTTCACAGAGCCGTGTGGTATAATGAAAAGCTTTTCTGCTTCCTCTATGGATGATTCTTGGCAACTCACACCATTGGCCATGAGCTCCTCTTCTTCTTCCACCAAACAGAGGAGTTCCTTTGGCTTGTCCAATGATTATTCTTGCCTGCAACTTCAGAGCCACTCAAAGCAGCACGAGCAACAAGATCAGGGTGGTTGCTACATGCTAGGTGGAGGCCAACTTGGAAAAGAAGAGCCTCAGAAAACCGTTCATCGCTTCTTTGATGAATGGCCCCACAAAGGTAGACAAGGATCTTGGCTCGATTTGGATGACAAATCTTCCACAACCCAACTTTCAATTTCCATTCCCACCTCTTCTCACGATTTTCCAGCCTTCAGTTCCAGAACCCACCATGGTAATTGCTGA

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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