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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_08371 LG2 5323785 5325466 PREDICTED: GATA transcription factor 21-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/C 5323916 3_prime_UTR_variant
A/G 5324144 missense_variant p.Phe265Leu
G/A 5325305 missense_variant p.Thr27Ile
T/C 5325446 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_08371.1
MHEPMIPTYRYSVVSSPMSIDLNEDHTHTLFSTIHQVSSSSSSLSTSILFNPDQDQGGFRYCGSKHLQEAQKIVCFGGSWDHQAEKIENRSDLQLRLWKKEECDNLQGEDSSTNWMPSKMRMVRKIMISDQRGSHMADISNSKKMKAKEKNPTLSQLVTDDSNYNSSSNKNSLTARVCADCHTTKTPLWRTGPTGPKSLCNACGIRQRKARRATAGAATKANGTNKLEAKKSEVKKGKKLHSKGKKPKTGGAPVLVKKKRKPAKFRKKFGAFEDLSVRFQQVFPQDEKEAAILLMALSHGLLHGFPTDRYIS*


CDS Sequence:
>Vu_08371.1
ATGCATGAACCAATGATACCAACTTATCGTTATTCAGTGGTGTCTTCACCTATGTCTATAGATCTCAATGAAGATCATACACACACTCTCTTCAGTACAATCCATCAAGTCTCTTCTTCATCTTCTTCTTTATCTACTTCTATTCTCTTCAACCCAGATCAGGATCAAGGAGGATTTCGCTATTGTGGATCAAAACATCTTCAAGAGGCCCAGAAGATTGTCTGTTTCGGTGGATCATGGGATCATCAAGCAGAAAAGATTGAAAACAGAAGTGATCTCCAGCTTAGACTTTGGAAGAAAGAAGAGTGTGACAATCTTCAAGGCGAAGACAGTTCAACTAACTGGATGCCTTCAAAGATGAGAATGGTGCGGAAAATTATGATTTCAGATCAAAGAGGTTCTCATATGGCAGATATCTCTAATTCTAAGAAGATGAAGGCTAAAGAGAAAAACCCAACACTGTCACAGCTGGTAACTGATGATAGTAACTACAACTCTTCTTCAAACAAGAACAGTCTCACAGCTAGGGTTTGTGCTGATTGCCACACCACTAAGACCCCTCTCTGGAGGACTGGACCAACAGGTCCTAAGTCTCTTTGCAATGCTTGTGGAATTCGACAAAGGAAGGCAAGACGCGCTACTGCTGGAGCTGCAACAAAGGCAAATGGAACAAATAAGTTGGAGGCTAAGAAATCTGAAGTGAAGAAGGGGAAAAAGTTGCATAGCAAAGGGAAAAAGCCCAAAACTGGGGGTGCACCAGTGCTGGTGAAAAAGAAGCGTAAACCAGCCAAGTTTAGAAAGAAGTTCGGTGCTTTTGAGGATTTGTCAGTAAGATTCCAACAAGTTTTCCCTCAGGATGAGAAAGAAGCTGCAATCTTGCTCATGGCTTTATCTCATGGACTACTTCATGGCTTCCCCACAGATCGCTACATCTCTTAG


Promoter Sequence:
>Vu_08371::LG2:5325466-5327466(-)
AAAGTTTACTGGTGTAAAATATATGGTGGGTACTTACTCCTTAATAATGATTCTTTTAATTTTGACCTGTGCTGCAAAAGTAGAATATATAAGAACCAGGTTGGTTCTCAAAGTAAGAAAAAAAAAACATGTGACTAGAATTTTGTTCTGTGGTTATTTTATGAGGTTTCAAACTAAACTAAATCTTGACAGTTAAACTCGAAAGGTTGTCCTTCCTATATGAGACTTAACCAAACATCTCTTAGGACACAAGCTGACAATAACCATGCACCACTTCTGTAGATGTTCCTTAAGCCAACCTTCTCACATGTGAAGTCTTGGTAAAGTTTTTCAGTTTTCATCTCTCAGTGTCAACATTGACCTAAGTCTTTTGAGATATTTTCAATTTAAAATTTAGAAGATAGTTTTTTGTGGATTACAAAAATCTAATACATTTCAATTATTTAAATTTTAAAAAATTGGTTAATTTTTGCAAAGACATTTCACTTATAAACAAATATTTTGATAGGTAAATAAACTTTTTACTACTTTTCTTTAAAAGACTTTCATAAAAAAAATCAATTATTATTTAGTAAATGACATATTCTATTTGAAAAGTAAAATAATTTTCTTATATTTAAAGATCGATAAAACAAGTTTTAAAACGACAGAAAATAACTTAAATACTCATAAATAAAAAATTCTTAAAACCATCAAAATAAATAATTTATAACATTGAAGAAATTTCATAACAAATAATGAAAAGTATTGAAAAAAATGAGTATCTACTAATTTATATTTTGCTCTTTTGATCATATGCTCACTCAGAAAAGAAAATGAGTTCAGTCTAGAGAATGATAGGGTTAGAGTTATAAACTTTTAGTCATTTTGATTATAACATCCTATTATAAAAAATTGATGCATTTAGATATGATATTTATAAATCAGATGGATTTTGTCTTTAGAGTTAACATTAATCTGACATGGTAAATGAAAGTTATTTCTTTTAATTATTATTAAATTAACATTTAATTAAATTCAATATTTTTTTAATTGATTAAATATGCTTCTATTTGGGTTCATAAATATCTGTCCTATTCAATTTGTTAAGAGATGATGAAAGAGTTACTCTAATGTAAGGAGACTGTGCATCTTTTGTGCACTTGTGTGACCATATTTTGATCATATAAAACACAGGGACTAAATGCATGAATTGTACATAAGTTAATAAACTCTTATCAATAATTCCAACCTTTTTTTTTCTAATTTATTTACTGATTAAAAAGACTTTGGTGATCAATGAACTCAGTTCCTTTGTTTTTAACCAAAGTTAATCAATAATAAGGAATTATGATATTTAGAGTTACCACACTCATTTTTTTTTTTCTATATAACTGTTCTATCTACATCACAACAAAATTCAAATTTCTCATGTTCATTCAACATTTTGAAATGGATTTGCAGTACATAACTGATTCTGTATCTTCATTTTCCATATGGCAGATTCTATATATGTAGAACCCTCTTCTCAATCATAGCCATAGCTTAGGTGACAAAACTAAAATATGTTTGGCAGAAAAAACATTTGACTCATGCTAGAAGATTATTCTTGTGACCAAATTATTGGTTATTGATGTGTGACTACATTATCCCTATATCATCATGTGTGGCTACCATATCTCTTCCATAGTTCAAAGTTTCATCTAGACAATGGTAAAAAAAAAGAAAATTGTAGGGTTTTTGTCATACTCATGGGGACAGCCTAATAACAATCCACACTCTCCTGAATCCGTTTGTCTTTTCGATTTGTCTGCTTTAGATGTTTCCAAGTCACGTGAATGTCTTATAGTGATAGCTCTAAGGTGGTGCTAGGCTGTAATATCTATCTTCTGTTCTAACGAGTTTTACCATGACTCGTGTAGCAGAAACGTTCAGAATCAGAACCTTTTTGCCGTTTATTAATTTTTTTTTTCATTTTTTCCTTCTTCCTTTTCTTCTCCAAACCTTTCTTTATAATAACT


Gene Sequence:
>Vu_08371(-)
AGACAAAAGTTCGGCTTTGCAGTGCCTCTGATCTTTTTCACGCTCTTCTTTTCTTTCTCTCTCTTTACTTGGTTTGTGTGCAATGCATGAACCAATGATACCAACTTATCGTTATTCAGTGGTGTCTTCACCTATGTCTATAGATCTCAATGAAGATCATACACACACTCTCTTCAGTACAATCCATCAAGTCTCTTCTTCATCTTCTTCTTTATCTACTTCTATTCTCTTCAACCCAGATCAGGATCAAGGAGGATTTCGCTATTGTGGATCAAAACATCTTCAAGAGGTGAGAATATATACATATATATAGTTTTTTTTGTTGAAGCTAGAATATGTTCTCTTGTGTATATACAACAACAAGCTTAATTTGTCTTATTTATAGTTATATAGATAGAGTATGATATGTAGAACATGATCATATTCATGATCTATATCTTTTTGTTTTGATGAATTTAATCATGTGATCTGTAGGCCCAGAAGATTGTCTGTTTCGGTGGATCATGGGATCATCAAGCAGAAAAGATTGAAAACAGAAGTGATCTCCAGCTTAGACTTTGGAAGAAAGAAGAGTGTGACAATCTTCAAGGCGAAGACAGTTCAACTAACTGGATGCCTTCAAAGATGAGAATGGTGCGGAAAATTATGATTTCAGATCAAAGAGGTTCTCATATGGCAGATATCTCTAATTCTAAGAAGATGAAGGCTAAAGAGAAAAACCCAACACTGTCACAGCTGGTAACTGATGATAGTAACTACAACTCTTCTTCAAACAAGAACAGTCTCACAGCTAGGGTTTGTGCTGATTGCCACACCACTAAGACCCCTCTCTGGAGGACTGGACCAACAGGTCCTAAGGTAAATTCTTTTTTTATTTTCCCTTACACGAATTCAACCTCTAATTTTCTTTTCATGAAAAGCAATTAATTTGCTCTAGGTTTTTATTTTAGTGTGTTCAATCATAAGTAATTAAGCTTTCTATGATGTAGAACAAAGCAATTACATAATATCTTTAATTTGCTGAGAAACATAATGAGAATTGACAGATATGTTAATAATGCAACTAGAAACTTTGAATTAAACAATCAATCTTAATGTTGAAATTCAATTGGGTTTTACAGTCTCTTTGCAATGCTTGTGGAATTCGACAAAGGAAGGCAAGACGCGCTACTGCTGGAGCTGCAACAAAGGCAAATGGAACAAATAAGTTGGAGGCTAAGAAATCTGAAGTGAAGAAGGGGAAAAAGTTGCATAGCAAAGGGAAAAAGCCCAAAACTGGGGGTGCACCAGTGCTGGTGAAAAAGAAGCGTAAACCAGCCAAGTTTAGAAAGAAGTTCGGTGCTTTTGAGGATTTGTCAGTAAGATTCCAACAAGTTTTCCCTCAGGATGAGAAAGAAGCTGCAATCTTGCTCATGGCTTTATCTCATGGACTACTTCATGGCTTCCCCACAGATCGCTACATCTCTTAGATTTACAAGACTGGTTTCAAATCATAAGACAAATTCTCAGTGTTGCGCTAGATTTAGTGATGTTAGTACGGGAACTGATAATAGGGACAATAAAATTATGAGGTGTGGTTTTCTCAAGTTGATTATATGATGAATTTTGAACAAGAAGACAAATACAAAATAATAGTGTAATGTGTTTCAATAATTTGATTCATTACTCTTTGTTCTTCGTCA

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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