Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_08367 LG2 5284712 5285811 PREDICTED: homeobox-leucine zipper protein HAT22-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   response to hypoxia, response to hypoxia
Cellular Component   located in   nucleus
Molecular Function   enables   sequence-specific DNA binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, RNA polymerase II-specific, protein binding, DNA-binding transcription factor activity
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
A/G 5284955 missense_variant p.Ser82Gly
C/T 5285072 intron_variant
A/G 5285160 intron_variant
A/G 5285381 intron_variant
T/A 5285396 intron_variant
T/G 5285402 intron_variant
T/G 5285407 intron_variant
A/C 5285411 intron_variant
T/A 5285433 intron_variant
T/A 5285437 intron_variant
C/G 5285438 intron_variant
C/T 5285760 missense_variant p.Ser220Phe

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_08367.1
MEDDEACITSLSLGLGMGSHVTKKEKQKLPSLDLTFQICPKGEQTIHVDKQQRQQHLLHHDDKAKRLLCLKHPTENSSPDSSNNSSNGSRKKLKLTKEQSATLEDIFKLHNTLNPAQKQALADQLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCEKLTDENLRLKKELQELRAQKIGPKPLYIQLSKATTLSICSSCEKELKPNEGKKGGISDVVRNSSQKLQNSVGVKGI*


CDS Sequence:
>Vu_08367.1
ATGGAAGATGATGAGGCATGCATCACCAGTCTTAGCCTTGGACTAGGAATGGGGAGCCATGTCACAAAGAAGGAGAAGCAGAAACTCCCTTCTTTGGACCTAACGTTTCAGATTTGTCCAAAGGGGGAGCAAACCATTCACGTGGATAAACAACAACGACAACAACATCTTCTTCATCATGATGATAAGGCAAAAAGGTTGTTATGTTTGAAGCACCCCACTGAAAATAGCAGCCCTGATAGCAGCAACAACAGCAGTAACGGCAGCAGAAAGAAACTGAAGCTTACCAAGGAGCAGTCAGCCACCCTTGAGGATATTTTCAAGCTGCATAACACTCTTAACCCCGCACAAAAGCAAGCACTTGCTGATCAATTGAATTTAAAGCATAGACAGGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAGTTGAAGCAAACAGAGGTGGATTGCGAGTTCCTGAAGAAATGTTGTGAGAAACTAACGGATGAGAATCTGAGACTGAAGAAGGAATTGCAAGAGCTGCGTGCACAAAAGATTGGACCAAAACCATTGTACATTCAACTGTCGAAGGCCACAACCTTGAGCATTTGTTCATCGTGCGAGAAAGAATTGAAGCCTAATGAAGGGAAGAAAGGAGGCATTTCCGATGTGGTCCGAAACAGCAGCCAGAAATTGCAGAACAGCGTAGGGGTAAAGGGCATTTAG


Promoter Sequence:
>Vu_08367::LG2:5282712-5284712(+)
AATTTGATTATTTATTTTAGCTAGATTTTAATATTTAATCCGTTTCAATATAATATTTTTTTATGGTTTTTTTTACGAAAATTAAGATAAAATTTTAATTATTTTATTTTTAAGATAATTTTAATTTATTCTCTGTTTAAAGTTCAGATACTTTTTAATATAAAATGAAATATATATTTAAATAAAATATATCATCGTAATTAAAATTTTAAAAGTAAAGATAAAAATATTTTTTTATTAAAAAACGACAATTATAAAGGTGAAAAAATATAACGATAAGAATATCAGGTACAATGATTATAATTTCGTAACTTACTTTTAACATATTATTTAACATCTATTCACTGAAAATCATACACTATTGTGAGTTTCAACTGAAAATCATAAACTCTTGTGAGTTTCATTCATTTAATGATTTATTTTTAATTATTAGTTAATAATTCAACCTGTGTTAAAAGATAAGAGTGCGTTAATAATACTTTCCCAAAGACTAAAATGCACTTTTAGTTTCTCTTTTTTATTGTTTGGTTTAAAATCTAGTTTATATTAAGCTCAAAAGTTTCATTTTAATTTCTTGAAGTTTTTAAATATACTTAGTTTGCTTTTTGTTAGGTTATTACATTAACTTGATTATTCTTGGTTAGATGAAACAAAAATACAAAACATACCATACAAATCACCCTTTCTCATGTCAACAAAATTAACAATATTATAATGACAAGACTAATAAATTAGTTTAATGAAAAACAAACATTTTACAGTATATCAAAGTTGAAAAGTTAGTAAAAGTTCAAGAGAGCAAAGCTAAATAATAAATAAACAAATGAAATACTAAAAGTGTACATTTAGTATTATATAATTCCAATCAATCTTTTAAGTTATGCAAAGTATTATTTAAAATTTATGTATAATAATTTCAACATAATAAAATGACTTTACATATATTTTCCAATTATTAAAATAATTACAATAAAAAAATAATAATCTCATCATATTTTATTATTGCTGAATGATAAGAGAAAAATATTATGGTATATAATTAAATAATCAGATTAAAAATAGAAATATAATTAATGTAAATATTAAAGAGTAAGGCTACAGTGTTATTTCCATATCTATTTCTGTTTCTTTTTGTATGTACAAACCATAAATATCAAGGATTAACCCTTGATTCATTTAACTTTACATATATTTCAACTTATTCTTAATTACTTAGAAATGAAAACTGTGATATCAAAAACTAATATATTCTGCCCCAGCCATAAATAGTATTATTAAGGCTGTATGTTTCTATTCTTTATTACTTTCAGTTTAGCTTTTGGTGACAAGTTTTGTTGAAGCAGTGTAAAGAGCAATGATGTCTAATTATTATAATTTTTACTCAGTCTTTAGAAGCTACTGGAACCGAAAATGCAAAACAGAAAGTGTTTTTTTAACATTTCAAAATGCAATTTTTTTAATATTTCAAGATAGCCCGGAATGAAATATCACAGGAGAAGCTTATAAAGACGTGATTAGAATAATATGAACGGAAAAGGAAGAAGATTGAGAGTTGGGGTTATGGAAGCAAAGCATCTGACCAGACACAGAAGTATCATAGGAAAGTGTTGAGAAAGATAGGACCTGGTGACTGACTCAAACAGGGTTGGAATTAAAAAAATGGAAAAGTCAAACATTTTATGTAATTAAGAAAGTTTTGGTTTCCTCAAAGGAGTCAGAATTCTAACGCATGCTTTTACTCCTATTGCCCCCATTTTATTATTGCTTTTAATGCCCAAGTCCTCCTTAGTACTACCAATATTACTCTCCATGCACCATTTCTTTCTTTCTTTATTCTAAAACAAAAGTGTTGCAAACAATAACTGATACAACAAAATTCAATACCAAGACCAAACCCCAATAATAAAAGTGTTGATATCACCTCTTTCACAACTCCCTAATAACTTTCCCAATATTTGACCCCTTCTGTCTCTCTTTCTCTTTCCCTTCTTTCTCTGCCA


Gene Sequence:
>Vu_08367(+)
ATGGAAGATGATGAGGCATGCATCACCAGTCTTAGCCTTGGACTAGGAATGGGGAGCCATGTCACAAAGAAGGAGAAGCAGAAACTCCCTTCTTTGGACCTAACGTTTCAGATTTGTCCAAAGGGGGAGCAAACCATTCACGTGGATAAACAACAACGACAACAACATCTTCTTCATCATGATGATAAGGCAAAAAGGTTGTTATGTTTGAAGCACCCCACTGAAAATAGCAGCCCTGATAGCAGCAACAACAGCAGTAACGGCAGCAGAAAGAAACTGAAGCTTACCAAGGAGCAGTCAGCCACCCTTGAGGATATTTTCAAGCTGCATAACACTCTTAACCCCGTATTCATTTCTCTCCCTTTCACCAAACTATCTTGTTAGCAGTATTCTTTCTGTTTTTTCTTTTTATTTCATGGAAGCTAATTAAACTGCATGTTGAATTATCACACAATAGATTGTATTGTTGGTTTTTATTAGAATCTTTCACAGGAGATCATTAATCAAAGGGGAATTATTTATGGGTTGGTTTTGGTTTCACATGTAGGCACAAAAGCAAGCACTTGCTGATCAATTGAATTTAAAGCATAGACAGGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGTATGGTGTATAGATCATATATGGCTTTTATGATCCTTAAAAATGAGTTTCAATCTCTGGAGTTTTGGTTTTATCTCATTGTAGCCTTAACATTTCTCTCTTCTCTGTCAAGTTTACCATGGGATTTTTTTAAACCTTTTCTTGTTGACTTGACTGTGCATTAAACTTTGTTTTATTGACTTTTCAGGACCAAGTTGAAGCAAACAGAGGTGGATTGCGAGTTCCTGAAGAAATGTTGTGAGAAACTAACGGATGAGAATCTGAGACTGAAGAAGGAATTGCAAGAGCTGCGTGCACAAAAGATTGGACCAAAACCATTGTACATTCAACTGTCGAAGGCCACAACCTTGAGCATTTGTTCATCGTGCGAGAAAGAATTGAAGCCTAATGAAGGGAAGAAAGGAGGCATTTCCGATGTGGTCCGAAACAGCAGCCAGAAATTGCAGAACAGCGTAGGGGTAAAGGGCATTTAG