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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_08364 LG2 5250886 5254495 PREDICTED: putative disease resistance protein At1g50180
Map

Annotations  
category   relationship type   keyword
Cellular Component   located in   plasmodesma
Molecular Function   enables   ADP binding, ADP binding
SNP Position Effect Amino acid change
G/T 5250992 3_prime_UTR_variant
C/A 5251118 missense_variant p.Val913Phe
G/T 5251170 missense_variant p.Asn895Lys
A/T 5251368 missense_variant p.Phe829Leu
C/T 5251649 missense_variant p.Gly736Arg
G/T 5251663 missense_variant p.Pro731His
T/A 5252363 missense_variant p.Ser498Cys
C/T 5252470 missense_variant p.Gly462Glu
C/T 5252476 missense_variant p.Ser460Asn
G/A 5252811 splice_region_variant&intron_variant
G/*,A 5252814 splice_region_variant&intron_variant
A/G 5252983 intron_variant
A/T 5252984 intron_variant
A/T 5252991 intron_variant
A/T 5253000 intron_variant
A/C 5253046 intron_variant
G/A 5253065 intron_variant
A/G 5253171 downstream_gene_variant
T/C 5253195 downstream_gene_variant
G/T 5253213 downstream_gene_variant
G/A 5253251 downstream_gene_variant
G/T 5253336 downstream_gene_variant
A/T 5253343 downstream_gene_variant
C/T 5253687 missense_variant p.Ser270Asn

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_08364.1
MMAQAVVSFIVQSLGDLLIQEAVFLYGVEDQVLQLQTELRMMRSYLQDADRRQDENESLRSWISEIREAAYDSDDVIESYALREASRRNLPGVSNLIRRYASIINRFIEIHMVGSHVGNVKARISSLTRSLKTYGIKPEKEEPSNSMHGRQNLRRSYSHVIEEDIIGVDDDVKKLESYLVDPSKRVVAICGMGGLGKTTLAKKVYHSVDVRNSFKSRAWAYISQHCQARDVWIGILFRLISPSQEQRQEIDNMRDEELAKMLYQVQMEKSCLVVLDDIWNAETWSKLKPAFPHGTSVSAVGSKILLTSRNIDVAFQMDPSCYLHTLKCLNEVDSWELFQKKSFLKIDDPDYGEKEKLGREMVGRCGGLPLAIIVLGGLLASKPTFFEWDTVCQNINSYLRRANGKEQRLEEVLALSYYELPYQLKPCFLHLAHFPENLEIPTKKLIRIWVAEGIISLAHSEGEGEEALEDVAQRYLTELVERCMIQVVEKSSSGRIRSCQMHNLMRELCVERAHLENFLQEINSRNVDESRGTSRARSVGKVRRIALFLDQDVDRFFPSELKSHHHLRSLLCFHEKTARLSEWGLMKSFFKKCRLLRVLNLEGMQGLGGKLPKEIGYLIHLRFLSLRNTKIDELPTSIGNLKCLMTLDLLTGNSTVQIPNVIGNMQKMRHLYLPESCGNGIERWQLDNLKNLQTLINFPAEKCHVTDLMKLTNLRKLVIDDPNFGGIFRYPNVQFGHLESLFFVSYEDISVVHVALGCPNLYKLHIEGPIKNFPEPHQLSSKLLKLKLTGSGLLVDPMPTLEKLPNLRLLELQLDSFVGKQLHCSSKGFAQLKSLVIHDLFNLEEWRLDKGAMPCLRELKIENCTKLEKVPDGLRFLTTLQHLEIRSMFAAFRTNLEKGGEDHYKIQHVSAVVFCYCDY*


CDS Sequence:
>Vu_08364.1
ATGATGGCTCAGGCTGTAGTGAGCTTCATAGTGCAAAGTCTTGGTGATTTGCTGATTCAAGAAGCAGTGTTCCTATATGGGGTGGAAGACCAAGTGTTGCAGCTGCAAACTGAATTGAGGATGATGCGCTCTTACTTGCAAGATGCAGACAGAAGGCAAGATGAAAACGAAAGCCTAAGGAGTTGGATTTCAGAAATCAGAGAAGCAGCTTATGATTCTGATGATGTCATTGAGTCATATGCCCTCAGAGAGGCCTCAAGAAGAAATTTGCCAGGTGTGTCGAACCTCATCAGAAGGTATGCTTCAATCATCAACCGGTTTATAGAAATCCACATGGTGGGATCTCATGTTGGTAATGTCAAAGCCAGGATTTCTAGCCTCACAAGGAGTCTTAAAACCTATGGCATAAAACCTGAGAAAGAAGAGCCCTCAAATTCTATGCACGGGAGACAGAATTTGAGGAGGTCTTATTCACATGTCATTGAAGAGGACATAATTGGTGTTGACGATGATGTCAAGAAGTTGGAGTCATATTTGGTGGATCCCAGCAAAAGAGTGGTGGCCATTTGTGGGATGGGAGGATTGGGGAAGACAACATTGGCAAAGAAGGTGTATCATAGTGTTGATGTGAGGAACAGTTTTAAGAGCCGGGCTTGGGCTTACATATCACAGCACTGCCAAGCAAGGGATGTGTGGATAGGAATTTTATTTAGGCTGATCTCTCCTTCACAGGAGCAAAGACAGGAAATTGACAATATGAGAGATGAAGAGCTTGCAAAGATGCTTTACCAAGTTCAAATGGAGAAGAGTTGCTTAGTGGTCCTTGATGATATTTGGAATGCAGAAACATGGAGCAAACTGAAGCCTGCCTTCCCTCATGGAACATCAGTATCAGCAGTTGGTAGCAAAATATTGCTAACTTCTCGAAACATTGATGTTGCCTTCCAGATGGATCCTAGTTGTTATCTTCACACACTAAAATGTTTGAATGAAGTTGACAGCTGGGAGTTGTTCCAAAAGAAGTCATTTCTAAAAATTGATGATCCAGACTACGGAGAGAAGGAGAAGTTGGGAAGGGAAATGGTTGGAAGATGTGGAGGTTTACCATTGGCCATCATTGTTCTTGGAGGACTGTTAGCATCAAAGCCTACATTCTTTGAATGGGACACTGTGTGCCAGAACATCAACTCATATTTGAGGAGAGCAAACGGCAAAGAACAACGCTTAGAAGAGGTGTTGGCTTTGAGCTATTACGAATTACCATACCAGTTGAAGCCATGCTTCCTACACTTGGCTCATTTCCCTGAAAATTTAGAGATACCAACAAAGAAACTAATTAGAATATGGGTGGCAGAGGGTATTATATCTTTGGCTCACAGTGAAGGAGAAGGTGAAGAAGCTCTTGAGGATGTGGCACAACGTTACCTGACTGAGCTAGTGGAGAGGTGCATGATTCAAGTAGTTGAAAAGAGTTCATCAGGAAGAATTAGAAGTTGTCAAATGCACAACCTCATGAGGGAACTTTGTGTTGAGAGGGCACATTTGGAAAACTTTCTTCAGGAGATCAATTCCCGGAATGTAGATGAATCTAGAGGGACATCAAGAGCAAGGTCAGTGGGAAAAGTTCGCAGGATTGCCTTGTTTTTGGATCAAGATGTTGATAGGTTCTTCCCTTCAGAACTGAAAAGCCACCACCATTTAAGGTCTCTTCTTTGCTTCCATGAAAAGACAGCTAGGCTCAGTGAATGGGGTTTGATGAAGTCATTTTTCAAAAAATGTAGGTTACTCAGAGTCCTGAACTTGGAAGGAATGCAGGGTCTGGGAGGGAAGTTGCCAAAAGAAATTGGCTATTTGATCCACCTAAGGTTTCTCAGTCTCAGAAATACCAAAATTGATGAGTTGCCCACATCAATAGGTAATTTAAAATGCTTGATGACCCTGGATCTTCTAACGGGGAATTCAACTGTGCAAATACCAAATGTCATAGGTAACATGCAAAAAATGAGACATTTATATCTACCAGAGTCTTGTGGTAATGGCATTGAAAGGTGGCAACTGGACAACCTGAAAAACTTGCAGACACTGATTAACTTCCCTGCAGAAAAGTGTCATGTAACAGATCTCATGAAATTAACCAATTTGAGAAAGCTAGTGATTGATGATCCTAACTTCGGAGGTATCTTTAGGTATCCTAATGTGCAATTTGGGCACCTAGAGTCATTGTTTTTTGTTAGTTATGAAGATATATCAGTTGTCCATGTTGCATTAGGATGTCCCAATCTTTACAAACTGCACATAGAAGGACCTATAAAGAATTTTCCTGAACCCCACCAACTTTCTTCCAAGCTTCTGAAGCTAAAGTTGACGGGTTCTGGACTTCTTGTAGATCCGATGCCAACATTAGAGAAGCTTCCAAATTTAAGGTTGCTTGAGCTACAACTTGATTCATTCGTAGGCAAGCAACTGCATTGTTCCAGCAAAGGCTTTGCTCAACTCAAGTCTCTGGTTATCCATGATTTGTTCAATCTTGAGGAGTGGAGGTTGGATAAAGGAGCCATGCCTTGTCTTAGAGAACTTAAGATTGAAAATTGCACCAAGCTTGAGAAGGTTCCAGATGGGCTCAGATTTCTTACCACTCTTCAGCATCTGGAGATCAGATCAATGTTTGCAGCATTCAGAACCAACCTTGAAAAAGGAGGAGAGGATCACTACAAAATCCAACATGTGTCAGCTGTGGTTTTTTGTTACTGTGACTATTAG


Promoter Sequence:
>Vu_08364::LG2:5254495-5256495(-)
AGAGAGAGAGAGAGAAAAAGTAGAGTTTTAACAAAAGCATTTTGAAAATCACATCAACTTTGTACATTTAATTAAAAGTTCTACTTCTGGGCAAACATAATATGGTGCGAATACATTCTCTACGAATAACTGACTCTCGAACTCAGAATCCGATTTTCGTAGACCATGTCTTATTTCATGGTTTTTACGTAATTTTTCAGAATAAACTATGGTGGTGACTTCAAAACCTCTTTTTTAAACTCGTCAATTTATGATTTGTCGTCTCGTCATGATTCGGGTTGTGACAACCGCTAAAAGGATGATAAAGAAGCAAGTCGTGGCTTCACCAAACCTGGTCACCACTATGACACTATCGCAAATCACCACATGTCCTCAACACCGTTGCGAGCAAACAAGAACCTACCATGAGAATCAACACAAATAAAAAAAAGTGGAATCCTAAAAGAAAGAGGAAGGAGATGAGGAAGAAGACGAACCAAATTCCGATATTTACCAACAAATATTTCTTTCGATAATTATCGATAATTTTTTTTTCGGTAATTACTAATGAATTTTTCTTTCAATAATTACCAATAGATATAAATTTCTATTGGTAAATATTACAGACTGTATTTTTATTGACAAATTTTGTCCCGTCGAAATCCGTTGAAAAAAAGTTGTTATCGACAACTTTTTGATGTTTTTGACAAAATTTATTTGTCAAAAAATGTTTGTTTTTGTTAATGCAAGCACATATTTTAACTAAAGAAAATTAACTTCTCTCATCCTAAATGACGATCAAAAATAGTTCTAAGAATCTTACTTAGCCTTCCAACTCACAAATGATCCATCTCAACCTAGAGACAACATAAGAACAATCAAAATGAAGCAAAAGAACCATTTATTAGTAGAAAATTATAACAACAATTTTAGGAACACATGTATCCCAAGAAAGATCACATGTAAGACAAGAACAAACTAAGTATCGAAGGAGATCTAAATTTTGATTTACCCGAATGAAAAAATTGATTGAATAGACTTAAAGAGTTCTTAACTGTAAACGCAACATCAGTCTCTGGTCATGAAGAAAAAGATGAGATTTGGGTGAAACGAAATAAAAAATAAATTGAGATTGTAGAAATTTTTTTTTTGAAGAAGAATGTTATGCATTTCAAACTTTAAAGTGACTAATTTGGGTCCTCTAAGAAAAAAAAAAGTTTTGTATTTTAAAAGAAAAAAAGGTTTTACAGTTTACCCATTTTTCTGTAGATATAACGAACATTTCATTAAATAATAAAGTCTAAGACCAAGCTATTAATATCATTTTTAGTGATATCTTATCTTTTAGTTATGATATTTTTTTATTTACAAGATTCAAATATAAGATTTTATTAATTGTATTGAGTTTAGCTCAACTAATCAATGATTTGTTAAGACAAACAATGTTCACATACACAAATAACCCCTGAAGTTGATTTGTCCCAAACAGTTTAGATTGAGCTTTTCTTGCATTTTGATTGGACTCAATCCAACCCTTCATGTTGGAAATTTAATTTTATTATAATTATTATTATATAGATATACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATATATATATATATGCAAATTTAATTTTATTATAATTAGTTTGAAAAAACAAACTAAATTTCAGTCTAAATTTCACAACTTATGGCTTCAGCTTAATACTTTAAAGTGCTCATGGATAGAATTGGGAAGGGAGAAGTTATTGCATGAGTTGGACGCCAATTGGCATAGCCGTAATAATGCATAGTTTCTGGGCAAGTGTTTTCGACAAATACTGCAACAAGTCATTTTCAAAGTCAACCTTTTAGTCGTTGTTTGATTGTTCTCTTCCCTTTGTTAAATAGATAGCACTAGTAGTGTACAAGTTTGAAAATTAGCAAAAGGGTTGTGATTAATCAGGAAAAGGATTTTGCTTTCGCAAAGAAGAAGGACCTCGA


Gene Sequence:
>Vu_08364(-)
ATGATGGCTCAGGCTGTAGTGAGCTTCATAGTGCAAAGTCTTGGTGATTTGCTGATTCAAGAAGCAGTGTTCCTATATGGGGTGGAAGACCAAGTGTTGCAGCTGCAAACTGAATTGAGGATGATGCGCTCTTACTTGCAAGATGCAGACAGAAGGCAAGATGAAAACGAAAGCCTAAGGAGTTGGATTTCAGAAATCAGAGAAGCAGCTTATGATTCTGATGATGTCATTGAGTCATATGCCCTCAGAGAGGCCTCAAGAAGAAATTTGCCAGGTGTGTCGAACCTCATCAGAAGGTATGCTTCAATCATCAACCGGTTTATAGAAATCCACATGGTGGGATCTCATGTTGGTAATGTCAAAGCCAGGATTTCTAGCCTCACAAGGAGTCTTAAAACCTATGGCATAAAACCTGAGAAAGAAGAGCCCTCAAATTCTATGCACGGGAGACAGAATTTGAGGAGGTCTTATTCACATGTCATTGAAGAGGACATAATTGGTGTTGACGATGATGTCAAGAAGTTGGAGTCATATTTGGTGGATCCCAGCAAAAGAGTGGTGGCCATTTGTGGGATGGGAGGATTGGGGAAGACAACATTGGCAAAGAAGGTGTATCATAGTGTTGATGTGAGGAACAGTTTTAAGAGCCGGGCTTGGGCTTACATATCACAGCACTGCCAAGCAAGGGATGTGTGGATAGGAATTTTATTTAGGCTGATCTCTCCTTCACAGGAGCAAAGACAGGAAATTGACAATATGAGAGATGAAGAGCTTGCAAAGATGCTTTACCAAGTTCAAATGGAGAAGAGTTGCTTAGTGGTCCTTGATGATATTTGGAATGCAGAAACATGGAGCAAACTGAAGCCTGCCTTCCCTCATGGAACATCAGTATCAGCAGTTGGTAGCAAAATATTGCTAACTTCTCGAAACATTGATGTTGCCTTCCAGATGGATCCTAGTTGTTATCTTCACACACTAAAATGTTTGAATGAAGTTGACAGCTGGGAGTTGTTCCAAAAGAAGTCATTTCTAAAAATTGATGATCCAGGTGTGTAGATTTTTCTTGCCCTCTTCCTATAATGCACTCCCAATTCTCAGCATTATTCACAATGCAGTTGTTTAACACATTGATTCACTTGCTAGTCTAAATCTTTTAGGGCTTAGAACTTGAAATTCTCTGGTAGTTGATTAAAGATGCAGAGTGAAAATTTCATTTTATTAACAAGGAAAAAACAGTAATACAACCCTGTTTATGACCTCTAGAAATTTTCTCTCCATGTTGCAGAAAGGGGGAAATCATAAGCTGAAATTCATAAAACAAAAATTGACTAGTCATCATTGAGGTTTACAATATGGTTAACTTTCTGTCATATAAATTTCAGATTTCAATTTTTTTCTAATGGTTTGTGCCTTGATTACTATGTGTTCTTCACTTGCTCTAAATAAATATATTGCTTCAGTTTCTGTGTCTTGTTAAAAGTTCAACAAAGTTTTATGCTCTCTTTTTTCTCTTCGAAAGTTTAGCCTTGTCATATATACTTTACATGTTTGATACCCAACATACATGAGATGACCATTGCTATTATTTCTGTGACCTTGGATTGATTATCTACCAAAGAACAAAATATAGGATTTGCACATGGAAATGAAATCACAACCTAGTACAATTCTGGTTTTTTTTCTCCACAGACTACGGAGAGAAGGAGAAGTTGGGAAGGGAAATGGTTGGAAGATGTGGAGGTTTACCATTGGCCATCATTGTTCTTGGAGGACTGTTAGCATCAAAGCCTACATTCTTTGAATGGGACACTGTGTGCCAGAACATCAACTCATATTTGAGGAGAGCAAACGGCAAAGAACAACGCTTAGAAGAGGTGTTGGCTTTGAGCTATTACGAATTACCATACCAGTTGAAGCCATGCTTCCTACACTTGGCTCATTTCCCTGAAAATTTAGAGATACCAACAAAGAAACTAATTAGAATATGGGTGGCAGAGGGTATTATATCTTTGGCTCACAGTGAAGGAGAAGGTGAAGAAGCTCTTGAGGATGTGGCACAACGTTACCTGACTGAGCTAGTGGAGAGGTGCATGATTCAAGTAGTTGAAAAGAGTTCATCAGGAAGAATTAGAAGTTGTCAAATGCACAACCTCATGAGGGAACTTTGTGTTGAGAGGGCACATTTGGAAAACTTTCTTCAGGAGATCAATTCCCGGAATGTAGATGAATCTAGAGGGACATCAAGAGCAAGGTCAGTGGGAAAAGTTCGCAGGATTGCCTTGTTTTTGGATCAAGATGTTGATAGGTTCTTCCCTTCAGAACTGAAAAGCCACCACCATTTAAGGTCTCTTCTTTGCTTCCATGAAAAGACAGCTAGGCTCAGTGAATGGGGTTTGATGAAGTCATTTTTCAAAAAATGTAGGTTACTCAGAGTCCTGAACTTGGAAGGAATGCAGGGTCTGGGAGGGAAGTTGCCAAAAGAAATTGGCTATTTGATCCACCTAAGGTTTCTCAGTCTCAGAAATACCAAAATTGATGAGTTGCCCACATCAATAGGTAATTTAAAATGCTTGATGACCCTGGATCTTCTAACGGGGAATTCAACTGTGCAAATACCAAATGTCATAGGTAACATGCAAAAAATGAGACATTTATATCTACCAGAGTCTTGTGGTAATGGCATTGAAAGGTGGCAACTGGACAACCTGAAAAACTTGCAGACACTGATTAACTTCCCTGCAGAAAAGTGTCATGTAACAGATCTCATGAAATTAACCAATTTGAGAAAGCTAGTGATTGATGATCCTAACTTCGGAGGTATCTTTAGGTATCCTAATGTGCAATTTGGGCACCTAGAGTCATTGTTTTTTGTTAGTTATGAAGATATATCAGTTGTCCATGTTGCATTAGGATGTCCCAATCTTTACAAACTGCACATAGAAGGACCTATAAAGAATTTTCCTGAACCCCACCAACTTTCTTCCAAGCTTCTGAAGCTAAAGTTGACGGGTTCTGGACTTCTTGTAGATCCGATGCCAACATTAGAGAAGCTTCCAAATTTAAGGTTGCTTGAGCTACAACTTGATTCATTCGTAGGCAAGCAACTGCATTGTTCCAGCAAAGGCTTTGCTCAACTCAAGTCTCTGGTTATCCATGATTTGTTCAATCTTGAGGAGTGGAGGTTGGATAAAGGAGCCATGCCTTGTCTTAGAGAACTTAAGATTGAAAATTGCACCAAGCTTGAGAAGGTTCCAGATGGGCTCAGATTTCTTACCACTCTTCAGCATCTGGAGATCAGATCAATGTTTGCAGCATTCAGAACCAACCTTGAAAAAGGAGGAGAGGATCACTACAAAATCCAACATGTGTCAGCTGTGGTTTTTTGTTACTGTGACTATTAGGTTGGCATTTCTATTCTGTAACTCCGTGATGGTGTCTGGATTAATTAGTTCATTCACATAGCATTGATTATGTTAATCTTCATCTAAACATACATATATGTACGAACAAATAAAGGGTGCATAATGGTCAGAGTATCAGATTGATTTTAGACTTTTAGTGAAACAGAGGTATAATTTATTGATCAATAATAGTACGAGGTATATCTACG

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