Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_08362 LG2 5235311 5236647 PREDICTED: probable WRKY transcription factor 17
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/T 5235384 missense_variant p.Ser25Phe
T/A 5235431 missense_variant p.Ser41Thr
T/A 5235457 synonymous_variant p.Ser49Ser
C/T 5235475 synonymous_variant p.Leu55Leu
G/A 5235480 missense_variant p.Cys57Tyr
T/A 5235531 missense_variant p.Leu74His
C/T 5235586 synonymous_variant p.Pro92Pro
C/G 5235587 missense_variant p.Gln93Glu
C/T 5235607 synonymous_variant p.Asn99Asn
C/A 5235609 missense_variant p.Pro100Gln
C/T 5235735 missense_variant p.Thr142Ile
C/T 5235772 synonymous_variant p.Asp154Asp
A/T 5235790 synonymous_variant p.Gly160Gly
C/T 5235817 synonymous_variant p.Ser169Ser
C/T 5235919 intron_variant
A/T 5235948 intron_variant
A/T 5235955 intron_variant
T/A 5235975 intron_variant
T/C 5235982 intron_variant
A/C 5235989 splice_region_variant&intron_variant
G/A 5236023 synonymous_variant p.Glu209Glu
G/A 5236028 missense_variant p.Arg211Gln
C/T 5236060 missense_variant p.Arg222Trp
G/A 5236062 synonymous_variant p.Arg222Arg
G/A 5236252 intron_variant
G/A 5236275 intron_variant
G/C 5236327 intron_variant
C/T 5236335 intron_variant
C/A 5236347 intron_variant
G/T 5236470 intron_variant
C/G 5236484 intron_variant
G/T 5236587 missense_variant p.Lys286Asn
C/G 5236588 missense_variant p.Arg287Gly

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_08362.1
MAVDMVDPVPRTRMEEQLAIQEAASAGLKSMEHLIRLLSPSPCNSSSFSSNNNNLDCSQITDFTVSKFKQVINLLNRTGHARFRRAPSQPQPQAPPQPNPQPQLQAQPQTQQGFTLDFVKPTILNSKPCNKDETLTLSTTTTTSSSFLSSVTNDASVSDGKIGPFLPPSAAKPPLSSSHRKKCRDAALSAKPSCHCSKKRKSRVKQSIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPFPRYYSILSSIALLNGLKSNADLNPTAWCRKLEGSARPAVTVTADARKRGKVGLEVNFCGVDFDGVV*


CDS Sequence:
>Vu_08362.1
ATGGCAGTGGATATGGTGGATCCTGTTCCCAGAACCAGGATGGAGGAACAATTAGCAATACAAGAAGCTGCTTCCGCTGGTTTGAAAAGCATGGAGCATCTCATTCGCCTCCTTTCTCCCTCTCCCTGCAATTCTTCTTCTTTTTCTTCTAACAACAACAACCTCGACTGCTCCCAAATCACCGACTTCACCGTCTCCAAGTTCAAACAGGTCATTAACCTTCTCAACCGCACCGGCCACGCCCGCTTCCGCCGTGCACCGTCCCAACCCCAACCCCAGGCCCCACCGCAACCAAACCCACAACCACAACTTCAAGCCCAACCTCAAACCCAACAAGGTTTCACTTTGGATTTCGTTAAACCCACCATTCTCAACTCTAAGCCCTGCAACAAAGACGAAACTCTCACTCTCTCCACAACCACCACCACCTCCTCTTCCTTTTTATCCTCCGTCACCAACGACGCCAGCGTCTCCGACGGAAAGATCGGTCCTTTCCTCCCTCCCTCCGCCGCCAAACCTCCTCTCTCCTCATCCCACCGGAAAAAGTGCCGCGACGCCGCGCTCTCCGCCAAACCCTCCTGCCACTGCTCCAAGAAAAGGAAATCACGCGTGAAACAATCCATCAGAGTCCCGGCGATAAGTTCCAAGATCGCCGACATCCCGCCGGACGAGTACTCGTGGAGGAAGTACGGGCAAAAACCGATCAAGGGTTCACCTTTTCCTCGGTATTATTCTATTCTTTCTTCCATCGCCTTGTTAAATGGGTTGAAGTCAAATGCAGATCTCAATCCAACGGCGTGGTGTCGGAAACTCGAGGGAAGTGCCCGTCCGGCCGTGACGGTAACGGCGGATGCGAGGAAGCGCGGAAAAGTTGGGTTGGAAGTCAACTTTTGCGGTGTGGACTTTGACGGAGTCGTCTAA


Promoter Sequence:
>Vu_08362::LG2:5233311-5235311(+)
TCAAATGGAGTATTTAATTTATTTTGAACTTATATTTTTTATTAAAATAAAAAAAAATTAAAATATTTACAGATATATTTAGAGATGGTAATGAGACGGATAAGGCATATATAGTGTTTATCCACTACTATTCGTAACAGTGTTATATTCCTAGTTGAATATCAGTTTAAAAGATAATTAAAGATATTTTAAAATCAGTGAGTACATGTGAATATTTACAAATATTTAAAAAAAACATATTTTATCAATTTTTAAATAAAATCTATATATATATATATATATATATATATATATATAATATAAACTAAATTAAAATTTAATATAATAAAATACTAATTAATTTTATTTTTAATTAAATTTAATCTAATAAAATATAAATTAAATTTTAATTTTAATTTTTTATAATATAATAAATATACATAAACATAAATAATATAATATCTATCTATTTATAAACGAATATTAAAATACTTATTAAAAAATAAATATTTACATACACTAATTATTTATCATAATTTTTATCTGTATATATCAAATTAGTATTTTTGTCTTTGGGTTTTAGGTTAATAGAGTAAATTTTTTCATACATACACGTATGCATAACATGTAGATAGGCCGGCACGCACCCTATCATCCTTGCCTTCTCAATAAAAAAAAAATTAATAATTATCTAAAGCTATTTTTAATAATATGTAAATATAGCAAATCACCAGGTTAACTAGTCATGTTAAAATATTACTTAGAATTATCGTTACTGGTGAAATGAACTTCCTATATGAAACAATTACATTTCTACGGTGATATGAGAAAGATATTTAGTGTTTTTTAAACTTTGCCCTCCTACTCTTTAAAGCATCCAACATTGATATTTATAAAATTATATTTAATTTCTGATTAAAAGATAAATCCTAAATATATACGTCTAAAGGGTAATTTAAGAGAATTTTTAAAATATATGAAGAACCAGTGTGGAAATTTTAAAAATTGAGTCTGTAATGATAAGAAAAGTAATACGAATTGTTTTTCTTAAATAGATTTATTCTTAAAAGAATTACCTAAATAAGCAATCTCAAATTTTATTTTCATAAGTAAATCAGGTTATTGTAATGCGAACATAATTCTAACATGTAAATAGTGATTATTTATATTGAAAATTTTATATTAATCACCATCTACAAAAAACAATATTATTTCTAAATCAGAATTTGACTCTATTTAATGTATAAATTAAAATTAAAAGTGTTTATTAATGTAATTTTTCTAAACAATAGATATATTTAGAGAGAAAAAAAAGAAGTGTTGACTGTCTTATTTGCAAAAGATGAAATTAAGAGTTTGTCTTTATAAACACTTCCTTCGTCGTAGCAGCATTGAACAGTGTAAAGAACTTTATCGACAAAAGGAAAAGTAGAATTAAGACTTGCATGTTTAATAATTCTTTACTAAGATCCTATATGGGTTAATAATTTATCTGCCGAAAGAACTAGAGTTTACATTCTAAATATATTTGTTTATATTTATTAGGAATTAAATGAGAAAATTAAATATTGTTGTAGAAGGAGAGAAGTATGAGAAAGAGAGAGGAAAAAAGAAGTTAATGTTAAGACAGTGGTTGGTTGTGAAGTACAGTGAGAGTTGAAGAAAAGGAAAAACAGAGAAAAAAAGGAATGATGGAATTAACCATAATGATATTTTGTAATATGTGACTTTTACATTTATTTATTTTCTGGTCTCTTATCTGTTACCCACTAATAGAAGGAAAGTGGGACCCACCACCAACACCTCTTTTGGACCTTCACAGTAACTATTGCTTTGTCGTGGCGTACTTTCCTCTGTTGCAACCAATGTTCGCCCTTGGATCCACGAAACTTGTTTGACTTTCCAACCTCTCTCTGTTTTATAACTTCTCCTCTTCCCACACCAAAACCGAAAACAAAAACAAAAACAAAAGCAAAAACCTATTTCCTTTGTTTCTTCTCACAATTCTTGTTCCTGTTTCA


Gene Sequence:
>Vu_08362(+)
ATGGCAGTGGATATGGTGGATCCTGTTCCCAGAACCAGGATGGAGGAACAATTAGCAATACAAGAAGCTGCTTCCGCTGGTTTGAAAAGCATGGAGCATCTCATTCGCCTCCTTTCTCCCTCTCCCTGCAATTCTTCTTCTTTTTCTTCTAACAACAACAACCTCGACTGCTCCCAAATCACCGACTTCACCGTCTCCAAGTTCAAACAGGTCATTAACCTTCTCAACCGCACCGGCCACGCCCGCTTCCGCCGTGCACCGTCCCAACCCCAACCCCAGGCCCCACCGCAACCAAACCCACAACCACAACTTCAAGCCCAACCTCAAACCCAACAAGGTTTCACTTTGGATTTCGTTAAACCCACCATTCTCAACTCTAAGCCCTGCAACAAAGACGAAACTCTCACTCTCTCCACAACCACCACCACCTCCTCTTCCTTTTTATCCTCCGTCACCAACGACGCCAGCGTCTCCGACGGAAAGATCGGTCCTTTCCTCCCTCCCTCCGCCGCCAAACCTCCTCTCTCCTCATCCCACCGGAAAAAGTGCCGCGACGCCGCGCTCTCCGCCAAACCCTCCTGCCACTGCTCCAAGAAAAGGTTTTTCCCCTGCACCCTTCAAAAAAATTAATAATTTTAATCACAAACAAACAGAGAAACTGATGTTGATTCTTTTTTTATTCAGGAAATCACGCGTGAAACAATCCATCAGAGTCCCGGCGATAAGTTCCAAGATCGCCGACATCCCGCCGGACGAGTACTCGTGGAGGAAGTACGGGCAAAAACCGATCAAGGGTTCACCTTTTCCTCGGTATTATTCTATTCTTTCTTCCATCGCCTTGTTAAATGGGTTGAAGTCAAATGCAGATCTCAATGTCTGTAAAAAAATCGATTTTTAATTTAAGGGAAAAACATACATATAATAGTTCTTCAATCATAACTGAAACTTGGCTTCAATCATTTACGTAGTTTTCATGCTGTTCAATTAATTGGAATCTGGAATTGAAAATTCTTATAGAAAATTGCTGTGTTTTTGGCAGTGGGTACTACAAGTGCAGCACCGTCAAAGGGTGTCCGGCGAGGAAGCACGTGGAGCGCGCGCAAGATGACCCGAAGATGCTGATAGTGACGTACGAGGGCGAGCACCGTCACGCGCTTCCGTTGCCTGCCGCTACCGGCGGTGGTTTCGGGCTTTGAGCTTGTTAGCCAACGGCGTGGTGTCGGAAACTCGAGGGAAGTGCCCGTCCGGCCGTGACGGTAACGGCGGATGCGAGGAAGCGCGGAAAAGTTGGGTTGGAAGTCAACTTTTGCGGTGTGGACTTTGACGGAGTCGTCTAA