Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_08268	LG2	4143165	4143539	PREDICTED: ethylene-responsive transcription factor 14-like	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, ethylene-activated signaling pathway, ethylene-activated signaling pathway, ethylene-activated signaling pathway, ethylene-activated signaling pathway
Cellular Component	located in	intracellular anatomical structure, nucleus
Molecular Function	enables	DNA-binding transcription factor activity, DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
G/A	4143247	stop_gained	p.Trp28*
A/G	4143309	missense_variant	p.Thr49Ala
A/T	4143316	missense_variant	p.Asp51Val
A/T	4143323	synonymous_variant	p.Ala53Ala
G/A	4143420	missense_variant	p.Ala86Thr
C/G	4143491	synonymous_variant	p.Val109Val

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_08268.1

MEDSQKSEAEKEKGGEEVKYRGVRKRPWGKYGAEIRDPRKPTGRQWLGTFDTAEEAARAYDRAALQLRGALAILNFPDASANSSTAGIGSSCSSQHKEVIEFEYLDDKVLEDLLESEVKRMNQD*

CDS Sequence:
>Vu_08268.1

ATGGAGGATTCACAGAAGAGTGAAGCAGAGAAAGAGAAAGGAGGTGAAGAAGTGAAATACCGTGGTGTGAGAAAGAGGCCATGGGGTAAGTACGGAGCAGAGATCAGAGATCCAAGAAAACCTACGGGAAGACAGTGGTTAGGAACATTTGACACAGCAGAAGAAGCAGCCAGAGCTTATGATCGTGCAGCACTTCAATTGAGGGGTGCACTTGCAATCCTTAATTTTCCCGATGCATCAGCAAATTCTTCAACTGCAGGCATTGGAAGTTCTTGTTCTTCACAACACAAGGAAGTTATCGAGTTTGAGTATTTGGATGATAAGGTCTTGGAAGATCTTCTTGAGTCAGAAGTGAAGAGAATGAACCAAGATTAA

Promoter Sequence:
>Vu_08268::LG2:4141165-4143165(+)

TAAATTAAATTAGGTGGGTTTGTCCGCCAACTCGGCTTACCACAGGTTCAACTCGGATGAGTTGGGTTATAAGTTAATCGGGTTGAAAACTAACCCGTATAAAAAATTACATTTTTTTCAAACCCAACCCAATTCAAACTTATGATGGGCTGGATTGACTTGCAGGTTACAACCCAGTTTAACAGTACTAGTACATATGTATAGATGCAAGTATAACTAGAAGAAAAAATATTATCTGACATTTTAAATTAGGAAAAAAAAGAAAATAATGGAATATAAAAATTTAAATATATAAATAATATATACTCTTGTATAAAATAATTTTTATATTATTATTATTATTATGCAATCACAGGCATATATAAATGTAAGTATATTGTTCTTTTTATAATATTTAAAGTTTATTAGTAATTATTTTTATGATAACCCAATAATCTTATACGGTTTAGAAGTTAAGATGAGTTTAAATATTCATTTTTCCTCCATCTATCTATGTGTTTTTAAAACAAACAATATTATGAATAATCTTAATAATATCATTTCTCCTCCCACTCACATATGTATCTTTAAAGAAAACATATTAATCTAATAATATCCTTCAACGGATTTGAAGTTGGAACCGTAATTATTTACATTTGCAAATGGTTAACGATATTTTTTTCTAATATATATATTTTGTTATAAATTGTTATCAAAAAATATTTTCGGCCAGATTTCAAAATGTTGTACAGCTAAATTTTAAAATTTATCCTTTTTCTAATAGATTTTAAACACATATTTCTTTTTTTACAAGGTAACGTTAGTATATAGATTTGATTAAGCTTTAAAATTGTTATTTTAAAAATTTGGATGTTAAGTTATTAAGTTGAAAATTTAACTATATTCATAATTTTCTTATTTATGAAATTGAAATATATAATTTAGCTTACTTGGTAAGTTTATTAAATATTATATTTTTATTAATCGTCTTTTCTAAATTTTTATGTTGGTATCCTGAATCTAGAAGTGTCAAATTCCTGATAACTTGTGTTGATTATATTTTTAGAAATCCATATTTTTAAGAGTTGTGGTGTTAATCTTTTGGAAGATTTATGTACAATTGAGTGAACCTTAGTTTTTGTATGAAATTCAATATAACGAGTAATATACTACTTCTAATTTGAATTGTTCTCCTACGAGTACTGACCATCATTGAATCTTGACTTGTTTGATAGAATACTAAAAAATAATTACGTTTTAGTAGTTCATTTACATACATTTTAATCTACATTTTATTTATTTGATCTTGGATTGATTTTATGTCATTTACTTGCATTTCATAACCAATATACAAAATTTAATGTACACTTCAAAATTATTAGTTGCAAATATTAATTACATAAACAAACTTTTGTTTAACCTATTTTTGGATGGAGTAAATTAAATAACCTCTTAAGTTTTATACTCTTTGACATCACTTTTTACCATTAAATTTTTAATATACGTAGAGTAAGAAAAAACTATATTTTCTCCACCATTCAAAAACTGTTACAAGAGTTTATTTCCATTACTCTTAAAACATCTAAATCTCACTCTATTTCATTTTCAGCCCAGACGCCGCCTCATGCTCGTACGAGAATAAGCGACCTCCGAATGATGTTGGATATTAACGTGACGATGCACAACACATGGCAAAATTTGTGCATGGGGTCCTGTCCCCACATACCTTTTTTTCTTGTCTGGTTATGGCTGTTCATTACAAAACATAAGCGAAGTCGAAGAAGAATCAAACTTTTACACTTCCTCGTGAAAGCTAAGAATAAAGTCATCGGGCACAAACAAAACTCATAGCTCAAACGCAACACGAGTTTTGGCATATAGCTAGGCTATATATATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAGATATTCATATATGAGATGTAAGACATAAACCTCCTAAAAAAGGGTGCAGAAAAAGGGAAGGTAACAGCATATATATATATATATATATA

Gene Sequence:

>Vu_08268(+)