Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_08159 LG2 3245249 3246799 PREDICTED: ethylene-responsive transcription factor RAP2-3-like
Map

Annotations  
category   relationship type   keyword
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
G/A 3245279 missense_variant p.Arg222Cys
A/T 3245331 stop_gained p.Cys204*
C/A 3245590 missense_variant p.Arg118Leu
T/A 3245986 intron_variant
T/A 3246024 intron_variant
T/A 3246134 intron_variant
A/G 3246235 intron_variant
C/A 3246367 intron_variant
A/G 3246388 intron_variant
C/T 3246537 intron_variant
A/T 3246540 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_08159.1
MCGGAIISDFIGVKRDRKVAAEQLWSELDPFSDLLGFDITTTTTSKRQPPFPVISDKKVESCAKKKKSVDAGKKSERARKNVYRGIRQRPWGKWAAEIRDPHKGVRVWLGTFPTAEEAARAYDAAAKRIRGDKAKLNFPDDTPPPSKKRCLSPDLPQQSSSSSTAPPPSAVSYSGDSSGGEELDLKQLELFLGLENEQPLPNNGVEWDNGYVMDDLWMLDDVVVANRNLVY*


CDS Sequence:
>Vu_08159.1
ATGTGTGGAGGTGCAATTATTTCCGACTTCATCGGTGTCAAGCGTGACCGTAAAGTCGCCGCGGAGCAGCTGTGGTCCGAGCTAGACCCTTTCTCTGACCTCCTCGGCTTCGACATCACCACCACAACCACTTCCAAACGCCAACCACCCTTCCCCGTAATCTCAGACAAAAAGGTGGAATCATGTGCCAAGAAGAAGAAAAGCGTGGATGCAGGGAAGAAGAGTGAGCGTGCTCGCAAGAACGTGTACAGAGGAATCAGGCAAAGGCCATGGGGGAAATGGGCTGCAGAAATAAGGGACCCACACAAGGGTGTCCGCGTTTGGCTCGGCACCTTCCCCACCGCCGAGGAAGCCGCCAGAGCCTACGACGCCGCCGCCAAACGCATCCGTGGTGACAAGGCCAAACTCAACTTCCCCGACGACACTCCACCACCCTCCAAGAAGCGCTGCCTCAGCCCCGACCTCCCTCAACAGAGCAGCTCCTCTTCCACCGCACCACCGCCTTCCGCCGTCTCCTACAGCGGAGACAGCAGCGGAGGAGAGGAACTCGACCTCAAACAACTTGAACTCTTTCTTGGCTTAGAGAATGAGCAGCCTCTGCCCAACAATGGTGTGGAATGGGACAACGGTTACGTGATGGATGACTTGTGGATGCTCGACGACGTCGTTGTGGCCAACCGTAATCTAGTTTATTAG


Promoter Sequence:
>Vu_08159::LG2:3246799-3248799(-)
CTAATAATAATTCTAATATCATTTTAAGAAAGAGATTTTAATCCCAATTCAATTTTATCAATTCAACATATAATACAAAATATACACTCACTTATATTCTCTAAATTCAATTTATTTTCAGTTTACACATAACTTATAAAGACTAATTTCATTTCTCATACTTTACTACAAATTAATCGTTATATTTAAATATTAAAAAATTTATATGATGGTTTTTGGTTGTGAATAATGAGTGAGGTTGGAATGACGAGATGATATATACAATCCCAAAATTGTCGCACTCCACTGAGATCCTAAGCAGGACCACTTTTTCATTTTCATTTTCATTTTCATTGTTTCATTTTCATTTTCCAACCTTAATAAGAAAAAGGTGATCATGCCCAATTTATAATTACGGCTGAGAAATAAATATCTTCAACTTTAACAACTTGCAAACAAGAAACAAAAAATAAATAAATAAATAAAAACACAAACCTTCGAAATGCGAAGCTCATTATAAAATAAATAGTAGTATATGATTATGATATACTAAAAATCAACTCAATGTAATCTTATCAAGCTAAGTAGGGGACCTCATATATTTTCTTTGCAAAAGGGCATGGCGGTTGAAAATATATATGTTTTTTATTTCATTTTCTGAAGCATTTTCGTTAATTTATTTATTTATCTGTTCTTCACATAATTATCTTAAGGTGTTCATATAAATCGGTTAGGAGACAGCGTTTGATGCATGCAGTTTGATAAGTCTCATCTCAAAGTCCTTCGCTTTGTTTGCGTGTATGCATGCCATGTCAAAGACTCTGCAACTCGTTTGTTTTCTTCTGCAAATTTTCTTTTTTTTATCTTCTTTTTATTACAATTTTACAACCTGTATTATCTCTATGCTTACGTTATTTTTCATGTTTGGGATGTTCGTGTACGTACTGTACGTTATATACGTACATTTTTACATATACTTACCTTTCTTATGCGTATTCCTACTCTTACTGCACTCTACTTTCGTTTTCTTGCCATTAAATATTCCCAGTGCATGGATTTGTCTTCAACTGATATTACCTTTCTTTTTTATATGCATATGGAAAAGATACAAGAAAAACTCTAGAAAAGGAAATGAATGAAAATGCTCTATATTTTGAATTATCATTATTTATTACTCTTTGAATGAAAACTAGAAAAGAAGAAGAGCTTATATTGCAGATAATAAATCTGGAATATCATCGTATTATAATGATACTATTTATTTTAAAATATATTTTAGAAATCTTATATTACTTTTAAATTAAATTTTATATTTAGTTTAGTTTACTATTCGTGTATAATACTAAAATCAAATACTCTTAGTTATCTCAGATATATATATTCTTCAAGTTTAACCCCACCAGTTTTAAACTTTATTCTTATACATTTATATTTGCATTTATTATTATTTTTATTATTTTTGTTCTGATCTACTTTCACGTGCAGTGATTTCCTTTCAAGTTATCCCTAGGATGAAGAGAGCAGTGAAAGTTAAAAGCACTTTTAACCTAGAAAAAAAAAATTCACAGTGGTTGGTAAGTGATTGGTTGATAGCAGTAACGTTGCATCAATGGCTTCAAGCGTTATTATTGCTCACTTCGAGGGTGACACATGAAACCAACGTAACTCCAAAACGCACTGGTCCCACCAAAAGCCCGTTTCATCTATCTCTGCCGTTAAATCATGGCGACGAGCGTTAAATACGTCTCTGCCCAAACAAACAAGGCGCAGAACCGTCTCCATCCAAACCAACCAATTTCCGCCACGTCACCACCCCTCAGTCTCCACCGTCTGATCACCACACACCATTCTATGATTCAGGTCTCAAGTGGGACCCACAGGACACGCCAGAATCAACTCAACCCAAGCTCTCTATATAAATTCGTACATCCATCGTCTTCTCCTCCCTCACTTGCTCATTTGATGTTCGTCACGAGACTCACAGTGCCAGTAGTTGTTATTCTCCGAAGAAGAAGAAGAAG


Gene Sequence:
>Vu_08159(-)
ATGTGTGGAGGTGCAATTATTTCCGACTTCATCGGTGTCAAGCGTGACCGTAAAGTCGCCGCGGAGCAGCTGTGGTCCGAGCTAGACCCTTTCTCTGACCTCCTCGGCTTCGACATCACCACCACAACCACTTCCAAACGCCAACCACCCTTCCCCGTAATCTCAGACAAAAAGGGTTAGTTCTTACCTAATCTAAATCAAGTTCAATTTTTTACACCTACCTACCTATCGCTGCCAGTTTATCTTTTTATTCTTGTTCTAGGTTGTTCCATGTGCCTATTCTATTTCCCCCATGTTCCGACTTACCTGTCTGAATTTTTGTTACCCAGTCAATTAACTTGTTTGCTACTGTTTTGAGTGGACATAATTCAAAAAAGATCCAAGGTTTTAACTTTCTTTTTTATCTCTTTTTAATCCAAAAATGATATATAAGTTTTTTCTTTTCTGTATCAACCACAAACCTATGAGTTTTTTATAGTTTATAATGTAAAGATTCTGCCTTGAGTTACTAATTTTGTTAATATCTATGGATAATACAGCATGCAATCGAAAAATAAGATATCTTTGTGTAGTGTCTATTTTTTTTATTTCGAAAAAAAAAAGTATCTGCTTGATGTTGAGTTGCCACTGATGATTTTATTTTCTGAACGATGATGAAAAGTAAGATGAAGTTATCATTGGGTGGCCTAAAAAGAGTTTTTTTTTTCTTGTTTACCTTGGGGTTTGGTTTGTGGTGGTAGATAAAGAAGTGGTGTGTGTTGATGAAGTTAGAGAGAAAATGGAGTAAAGTTGAAGCTTTTCCACCAATTTACAATAAAAAATGAGAAGACGCAAGCGTTTCTTTTGTTCACGTTTTTCCTTGCAGTTGAATGGTAATGGTAAAAAGGAAAAAGCTTATGAGTTTTTTAAAAGCAAACTTTATGACAGAAGAAAGAACGTGTCCCTAAAACAAAAACAGCCATTAACGGAAGAAGTTTGTATGGTGGGAAGTGTGGCAAGGATTAACGCATTGTTTGTCTGTACGTGGCAGTGGAATCATGTGCCAAGAAGAAGAAAAGCGTGGATGCAGGGAAGAAGAGTGAGCGTGCTCGCAAGAACGTGTACAGAGGAATCAGGCAAAGGCCATGGGGGAAATGGGCTGCAGAAATAAGGGACCCACACAAGGGTGTCCGCGTTTGGCTCGGCACCTTCCCCACCGCCGAGGAAGCCGCCAGAGCCTACGACGCCGCCGCCAAACGCATCCGTGGTGACAAGGCCAAACTCAACTTCCCCGACGACACTCCACCACCCTCCAAGAAGCGCTGCCTCAGCCCCGACCTCCCTCAACAGAGCAGCTCCTCTTCCACCGCACCACCGCCTTCCGCCGTCTCCTACAGCGGAGACAGCAGCGGAGGAGAGGAACTCGACCTCAAACAACTTGAACTCTTTCTTGGCTTAGAGAATGAGCAGCCTCTGCCCAACAATGGTGTGGAATGGGACAACGGTTACGTGATGGATGACTTGTGGATGCTCGACGACGTCGTTGTGGCCAACCGTAATCTAGTTTATTAG