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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_08024 LG2 2165384 2168967 hypothetical protein LR48
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/A 2167222 upstream_gene_variant
A/C 2167224 upstream_gene_variant
T/C 2167413 missense_variant p.Asp268Gly
T/A 2168428 missense_variant p.Asn102Ile

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_08024.1
MSLQYPGAALPQNVTMVAVDKDKNSAHAFRWAVNHLDNPVIIAVHVKHKNFSHHVTNVFPPDEDDVVNIFNSLRGICTRKAVMMKEAVIDDADVVRGLLEFANRNLIHSIVDIPTAMIKSAPDFCSVYIISKLKIMSARSAVRSLSKSLTTPKPVPVPPSPPSPGEGPLRGQLPRSRGTYEVAAEPMRIIQARERPKSTGNVISIDHIEIPPRPRNWSMDEKEISWLGVDFNRIDSGISESIPVTYSPQSAKELEAEMKRLRLELKQTMDMYSSACKQAISAKNQAEQIRQWKLEEDRKVEVVRMSQEAALAIAEKEKAIAKAAMEAAEEARRRAEQEAQRRKDAEEKARAEAEEKERALSTLAQNDTRYRRYTIEEIEMATEKFSPSNKIGEGGYGPVYKGHLDHTPVAIKILRPDAAQGMKQFNQEIEVLSCIRHPHMVLLLGACPEHGCLVYEYLDNGSLEDRLFRKNNSKPIPWNKRFEISAEIATALLFLHQNKPEPIVHRDLKPSNILVDRNYVSKISDVGLARLVPPSVANSVTQSYMTSAAGTFCYIDPEYQQSGILTTKSDIYSLGIMLLQIITGKPPMGLAHLVRKAVEKGRFEEVLDPVITDWPVEEALSYAKLALQCAQLSKKDRPILATEILPELNRLSRLELPPQNDQFSSSSDDNL*


CDS Sequence:
>Vu_08024.1
ATGTCTCTTCAATACCCAGGTGCCGCCCTGCCGCAGAACGTCACAATGGTAGCCGTCGACAAGGACAAGAACAGTGCCCACGCTTTCCGTTGGGCCGTTAATCATCTTGACAACCCCGTCATCATTGCCGTCCATGTCAAGCACAAAAACTTTTCTCATCATGTCACCAATGTGTTTCCACCCGACGAAGACGATGTAGTCAATATTTTCAATTCCTTACGCGGAATCTGTACTCGCAAAGCTGTCATGATGAAAGAAGCCGTAATTGATGATGCGGATGTTGTGAGAGGACTTCTAGAGTTTGCTAACAGGAATCTCATACATAGTATCGTGGATATACCAACAGCCATGATCAAATCAGCTCCGGATTTCTGCTCTGTTTACATAATTTCGAAATTGAAGATTATGTCTGCTCGATCAGCGGTACGGTCATTGTCAAAAAGTTTAACTACACCGAAACCAGTTCCTGTGCCGCCAAGTCCGCCCAGTCCAGGAGAAGGACCATTAAGGGGACAACTACCTAGAAGTAGGGGCACTTACGAAGTAGCAGCAGAACCAATGAGAATAATACAGGCTAGAGAAAGACCAAAGAGTACGGGAAATGTTATATCAATAGACCACATTGAAATACCCCCTCGTCCACGAAATTGGTCAATGGATGAAAAAGAAATTTCATGGCTTGGGGTGGATTTCAATAGAATTGACTCTGGTATATCAGAATCCATCCCCGTGACATATTCTCCTCAATCCGCAAAAGAACTAGAAGCCGAGATGAAAAGATTGAGGCTTGAACTGAAGCAAACTATGGACATGTACAGCTCAGCTTGCAAGCAAGCAATCTCGGCCAAAAACCAGGCGGAACAGATTCGTCAATGGAAACTGGAAGAGGATCGCAAGGTTGAGGTAGTTAGGATGTCTCAAGAGGCCGCTCTTGCAATTGCAGAAAAGGAAAAGGCTATAGCCAAAGCTGCAATGGAAGCAGCTGAGGAGGCTAGGAGGAGGGCTGAACAGGAAGCACAGAGAAGAAAGGATGCAGAGGAGAAGGCCAGGGCAGAGGCAGAAGAGAAAGAACGAGCATTATCTACGTTGGCTCAAAATGATACCCGGTATAGAAGATACACCATAGAGGAGATTGAAATGGCCACAGAAAAGTTCTCCCCGTCAAACAAAATTGGTGAAGGAGGATACGGACCTGTGTATAAAGGCCACCTTGATCACACCCCCGTTGCAATCAAAATTTTAAGGCCTGATGCCGCTCAGGGCATGAAGCAGTTCAACCAAGAGATTGAGGTACTAAGCTGCATTAGACATCCGCATATGGTCCTCCTCCTTGGTGCATGTCCGGAGCATGGATGCTTAGTGTATGAGTACCTGGATAACGGTAGCTTAGAAGACAGACTGTTCCGGAAAAACAACAGCAAACCAATTCCATGGAATAAACGGTTCGAAATATCTGCTGAGATAGCAACTGCACTCCTTTTCCTCCACCAAAACAAGCCAGAGCCCATCGTGCACCGAGACCTCAAACCATCTAACATTCTCGTGGACAGGAATTACGTGAGTAAAATCAGTGATGTTGGTCTTGCACGTTTAGTCCCTCCTTCAGTAGCTAATTCTGTGACACAATCTTACATGACTTCGGCTGCTGGAACCTTTTGTTACATTGATCCCGAGTATCAACAATCGGGGATTCTAACAACAAAGTCAGATATATATTCTCTGGGGATAATGCTACTTCAGATAATCACAGGCAAGCCTCCCATGGGTCTTGCTCACCTAGTTAGGAAGGCAGTTGAAAAGGGCAGGTTTGAAGAAGTGCTGGACCCTGTGATCACAGATTGGCCGGTGGAAGAGGCTCTGTCATATGCCAAATTAGCATTGCAGTGTGCCCAACTCAGCAAGAAGGACAGACCAATTCTTGCAACGGAGATTTTGCCTGAGCTTAACAGGTTAAGCAGACTTGAATTGCCTCCTCAGAATGATCAATTTTCTTCAAGCAGTGATGATAATCTATAG


Promoter Sequence:
>Vu_08024::LG2:2168967-2170967(-)
AAAAAAATTATTTTCAAATTCACTCTTACCTACTTCCAAATCTACTCAAATAAACAACAAAAAAATTTATCTTCAAATCCTCTCAAATCCCCTTCATCACTCTCTCCCTCAAGTGAACAATAATAGGCAAATATTATTTATCTAATAAATTATACTAGAAGGTAATATGATTATTTTCCATAAACGTGTTTACCTTATAATTTTATTTGCATTTCATTATTTTTATTTCTATTAAACTAAATAACTTTGTATTTTCACTCTTCTCACCTAGTTTTCTCTCCTTTTTCTTTTATCCATTCTCTCTATTTCTATTTCTTTATAACCTTTAAAATAACCTTTAAAAAAACACATATTAATTAGTTGACAAATCGTCAAAATTTTATACATTTTGTTTCAAAACTACCTTTTTTTATTAATACTCACCTTTTTTTATCAAATTATTTTTGTAAATATTGTAAAAATGTAGTTGACAGATATCTTGTGCTAAACTGTTAAAATATTAATGTGCTAATAGTGACATCATTATGTGTAATTTAACAAAATGTAAGAAATGTTAATATACGTTATTTTAAATTTAATCAAATTATTAATTTCATTTATTTATTAAATAACTAAGTTAACGTCTAATTATTTTTGCAAATTAATATCTGTTTGTTCTTGGAGGCTTCTGGTGTTGCGTCTGTTAAGGCATTGCATGAAAGAGTTGAATAGTTTGGAGCATGCATGCACATTCAGACGTTCCTTTGGGTCCCATTTTGACATGCTAATTCAACAATTAACACTACTTTTCACTATTTCTCTCTCCAATTCATACCATGAAAAGCTCCAAATCATGAATGCTGAACCCTTAATTTCAGAAAATCAGGTGAAAAAGGAAGAAAGAAAACAGACCCAAACCATTCACATGCATTTTTTTTGGCAATTTTTTCAACATAGTTAAAGACTATCCAAAGGATATATTAACCAATTTTTAATTTTCAATTACGCTTACTTGACCGATCTATTGTGTTTCACATCTCCATAAATATTTCAAAGAAAAAAAAAACAAAGTTTAAATTAAATTTATATATAAACAAAAATTGAAGATGAATAGTTAATGTTTACATTTCAATTTCTTTTTTCATTTTCATCTCCAAAAGGTATTTATTTATTTATAATATAAAGAAAATATTTCAAATATATTATTGTAAAAGAAAACAAAAAATAAAAGATAAATGATTGCTTGTGTAACAAGAAAAACATATTCTTGCACACTCAGGTTTTCTTCTATTTCTTAGCCAACTAAACGTTTTCCAGGAAATTGATGAGTTTTGTTGTAATTATAAAACTAACTAATCATTACAACGAAAAGCATCTTTGTCACAAAATATATATAATTAAAAATATATGGTATTACTTTATAAGGCTAGTTTTCTAAACCAAAAAGAAAAATAAAACAAAAATAATACTTTGAAACACATAATTATATATATATATATATATATATATATATATATATATATATATAAATATAATAAATGTGTCTCAATCTATATTATTATTAAAAAAAATATATCCTTGTCAGCAATCAATTGTATTTGGATCAAGCTTGTCCCACTTTACCTGTCTGACGGACCAGCAACTTTTCTTAAACAAATCCTCCACAAAAACGTGCTACTGGTGAAAAATTAGCTATTGTTTTTTTAAATTAAATTATTAGAATTAATTATAGTAAAAAAAAAGTATTTATGAGTTTATATTTTTAGCTGAATTTATAACATATATCTATGAATCTTTGATAGATAAATAAAAAAAATGAATTGGGTTGATTTCCATTTGGAATTGGTGAAGGGTTGGTCAAAGCAATGCCAAAATTAAAGAAAAGAACGAACGGTGGAGGAGGAATTGGGAAGGGTTTCCTGTTCAGAGGAGCTCTTTCATTATCCTTGTTCCATCAAGGCTTTCTGCGTTTGGTGGACCAAACACCAAACCGGCGGCGGCACCTTCCTTAACGTGCAATC


Gene Sequence:
>Vu_08024(-)
ATGTCTCTTCAATACCCAGGTGCCGCCCTGCCGCAGAACGTCACAATGGTAGCCGTCGACAAGGACAAGAACAGTGCCCACGCTTTCCGTTGGGCCGTTAATCATCTTGACAACCCCGTCATCATTGCCGTCCATGTCAAGCACAAAAACTTTTCTCATCGTAGCTACCCTCTTATTCACGCATATCATATCATATATACATATTTGTGGTCATATAACATTTATGATAATCATTGGAATTGATTGATCAAAGATAGCTTGTGATTTCCCTTTTTTATTGATGTTGCGTGTGCATGCATGCATGCAGATGTCACCAATGTGTTTCCACCCGACGAAGACGATGTAGTCAATATTTTCAATTCCTTACGCGGAATCTGTACTCGCAAAGCTGTATGCATTAATGTCAATGAGATTTTCGGTTATATATATCGCACTTGAAACTTGCACTCACTGTAGTACTGATTGGTGCGTTCAGGTCATGATGAAAGAAGCCGTAATTGATGATGCGGATGTTGTGAGAGGACTTCTAGAGTTTGCTAACAGGAATCTCATACATAGTATCGTGGTCGGTGCATCTGCCAAAAACACTTTGTCAAGGTTTCGTTAATTTTCTACTTGTTCCTATATATGTTTATCCCCTTTTCATATATCTATCCATATCTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTGTGTAACGAATTACTTTGTTTGACAATGTTGTGGCGTGCAGTCTCAAAAAACTTAAAGCCTATCAGTATCAGGATATACCAACAGCCATGATCAAATCAGCTCCGGATTTCTGCTCTGTTTACATAATTTCGAAATTGAAGATTATGTCTGCTCGATCAGCGGTACGGTCATTGTCAAAAAGTTTAACTACACCGAAACCAGTTCCTGTGCCGCCAAGTCCGCCCAGTCCAGGAGAAGGACCATTAAGGTGCCAAGAATGGAAGTTACTTAGCTAGCAACTTGATATCTATGTTACATATGTGTTTTGTTGAGATCATCTTCGTTTAAAGTTGGTGCAATTAGATGTTTTTAATTAATAATTTTTGGTTTGGTTACATGCAAATAGGGGACAACTACCTAGAAGTAGGGGCACTTACGAAGTAGCAGCAGAACCAATGAGAATAATACAGGCTAGAGAAAGACCAAAGAGTACGGGAAATGTTATATCAATAGACCACATTGAAATACCCCCTCGTCCACGAAATTGGTCAATGGATGAAAAAGAAATTTCATGGCTTGGGGTGGATTTCAATAGAATTGACTCTGGTATATCAGAATCCATCCCCGTGACATATTCTCCTCAATCCGCAGTAAGTGTGTAAAAGAAAATGTTATTGCATCTGAAAAAGTCGGATTGTGAATTTAACTGGCTTTGCTGTGGAACAAGAACCAATCTTTGTCCGAACAAAGATGGTTAGATGAACCTAACATTCCAATATTTAATTTACTTCATCACAGAAAGAACTAGAAGCCGAGATGAAAAGATTGAGGCTTGAACTGAAGCAAACTATGGACATGTACAGCTCAGCTTGCAAGCAAGCAATCTCGGCCAAAAACCAGGTTTGTATATACAGGAAAATGTGATGGGAGGAAGTCACCCTTTAAAGTTTTTAAAAAATGCTACGTGAGGGATTTTCTACTTTCTGACAAACACATTCACTAATAAGAATAAGTTTCATCCTTAACCATGGTGCTTCATATATAGTCCGAGAAAGCCAGTGGAGGAGGCTGTTCTGGTTTTAACTCTTTATGGTTATATATCAAATGAAAAATTATGAAATGACTCTTGAATGTATGATTGGTTAACTAACAGGCGGAACAGATTCGTCAATGGAAACTGGAAGAGGATCGCAAGGTTGAGGTAGTTAGGATGTCTCAAGAGGCCGCTCTTGCAATTGCAGAAAAGGAAAAGGCTATAGCCAAAGCTGCAATGGAAGCAGCTGAGGAGGCTAGGAGGAGGGCTGAACAGGAAGCACAGAGAAGAAAGGATGCAGAGGAGAAGGCCAGGGCAGAGGCAGAAGAGAAAGAACGAGCATTATCTACGTTGGCTCAAAATGATACCCGGTATAGAAGATACACCATAGAGGAGATTGAAATGGCCACAGAAAAGTTCTCCCCGTCAAACAAAATTGGTGAAGGAGGATACGGACCTGTGTATAAAGGCCACCTTGATCACACCCCCGTTGCAATCAAAATTTTAAGGCCTGATGCCGCTCAGGGCATGAAGCAGTTCAACCAAGAGGTAATTACACTATTTTTCACTCCTATATTTAAAACTATGACTCTTAAATGTTTTTGCAAAAGTTCCTGGCATAATAATGCTGTTGAATCTACCATGCACAATAATATGGCTAGTAAGAACCTTTTGCATAATTCTAATGCCAATTCTCTCTATTCAATTTTGGCAAGTGTTGTCCTTAAACTCTGTGAAGTTTCAACAGTAGAGTAAGAAAGGAAAGTTTTAATAGAAAATAGAAGTTATCGGACATGATTGATAGCATCCTTTCTCTCTGAAGTATGTGATTAGATTAAGATTCTTCTAAAGAAACATATCAGAAGTGGTCAATCCCTCGATATCTCATCTTTGGCCCCACTAAGGATATTGGATTCCCCTGATAAAGTAGTATGAAAGTTAGTTTATACTTATTTTCAATTAATTATAAGCATTTAATAGTGTATTTCAGGATGGACCCACAGACTTTTCATTGCCTTCCATGACTCAGTTATCAAGACACTAGTAATGCAATGCAAGATCATGTTTATGCAACTATAACAATATATACTTTTTTTCCTTCTTAATTGCATTCACAGATTGAGGTACTAAGCTGCATTAGACATCCGCATATGGTCCTCCTCCTTGGTGCATGTCCGGAGCATGGATGCTTAGTGTATGAGTACCTGGATAACGGTAGCTTAGAAGACAGACTGTTCCGGAAAAACAACAGCAAACCAATTCCATGGAATAAACGGTTCGAAATATCTGCTGAGATAGCAACTGCACTCCTTTTCCTCCACCAAAACAAGCCAGAGCCCATCGTGCACCGAGACCTCAAACCATCTAACATTCTCGTGGACAGGAATTACGTGAGTAAAATCAGTGATGTTGGTCTTGCACGTTTAGTCCCTCCTTCAGTAGCTAATTCTGTGACACAATCTTACATGACTTCGGCTGCTGGAACCTTTTGTTACATTGATCCCGAGTATCAACAATCGGGGATTCTAACAACAAAGTCAGATATATATTCTCTGGGGATAATGCTACTTCAGATAATCACAGGCAAGCCTCCCATGGGTCTTGCTCACCTAGTTAGGAAGGCAGTTGAAAAGGGCAGGTTTGAAGAAGTGCTGGACCCTGTGATCACAGATTGGCCGGTGGAAGAGGCTCTGTCATATGCCAAATTAGCATTGCAGTGTGCCCAACTCAGCAAGAAGGACAGACCAATTCTTGCAACGGAGATTTTGCCTGAGCTTAACAGGTTAAGCAGACTTGAATTGCCTCCTCAGAATGATCAATTTTCTTCAAGCAGTGATGATAATCTATAG

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