Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_08012	LG2	1810517	1812439	PREDICTED: receptor-like serine/threonine-protein kinase At2g45590	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	protein phosphorylation, negative regulation of metabolic process, regulation of cellular component organization, protein phosphorylation, inorganic ion homeostasis, protein phosphorylation, regulation of cellular component organization
Cellular Component	located in	nucleus
Molecular Function	enables	protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity

SNP	Position	Effect	Amino acid change
A/T	1811802	missense_variant	p.Lys429Met

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_08012.1

MPSRPPPPSPHAAVSAISHRREMILCGVIGGALFLTALIVSVTVFLYRKLSYNRTAPFEHNQRRFSYSVLRRATNSFSPSTKLGHGGFGSVHKATLPSGQTVALKVMDSPGSIQGEREFHNELTLCSNLRSPFVISLLGFSSDRRGRKLVLVYELMPNRSLQDALLDRRCPELMSWAKRFDIAVSVAMGLEYLHHSCEPPVIHGDIKPSNVLLDEDFGAKIGDFGLARVKAVEDLGMVEEKKEGVVEIAVEEFGVTEEGESVSVVDVDRSPESCPVRAVDYSDASPVGGDKLSVVSDGCFESVDSENVNLNKKKGGGGSGRDWWWRQESGAGGESGRVKDYVMEWIGSEIKKERPKSEWVDSCSSSSPKVENENGNANGNEKSKKERKRLDWWASLDEEKVKSKVKKNRKPREWWKEEFCEELSKKSKKKRGLEWWQREEEGVEQKKKRKSKGSRGSIDWWLDGLSGEIRNNGRRNSQDWGISGDVPKSGGISSTPSMRGTVCYIAPEYGGGGQLSEKCDVYSFGVLLLVLVAGRRPLQVTASPISEFERANLISWARQLAHNGRLLDLVDTSIHSLDKEQALLCITIALLCLQRCPGKRPSMKEVVGMLNGEADPPHLPFEFSPSPPSNFLFKGRKKAR*

CDS Sequence:
>Vu_08012.1

ATGCCATCGCGTCCGCCGCCTCCCTCGCCTCACGCGGCGGTTTCCGCCATCTCGCACCGTCGAGAGATGATTCTCTGCGGGGTAATCGGCGGGGCGCTCTTCTTAACGGCGCTTATTGTCTCTGTCACGGTCTTTCTCTACCGGAAACTTTCTTACAACCGAACGGCGCCGTTTGAGCACAACCAGCGACGTTTCTCTTACTCTGTTCTACGCCGCGCGACGAACTCGTTCTCGCCGTCGACGAAGCTCGGGCACGGCGGGTTCGGTTCGGTTCACAAAGCGACTCTGCCTTCCGGCCAGACTGTGGCGTTGAAGGTTATGGACTCGCCCGGGTCAATCCAGGGGGAGAGAGAGTTCCACAACGAGTTGACGCTGTGTTCGAATCTGAGGTCGCCGTTTGTTATTTCGTTGCTCGGTTTTTCTTCGGACCGGCGCGGTCGGAAGCTGGTTCTGGTTTACGAGCTGATGCCGAACCGGAGTTTGCAGGATGCGTTGCTGGACCGGCGGTGTCCGGAGCTGATGTCTTGGGCGAAGAGGTTTGACATCGCCGTTTCGGTGGCGATGGGGTTGGAGTATTTGCACCACTCGTGTGAGCCTCCGGTGATTCATGGGGATATAAAGCCGAGTAATGTGTTGCTGGATGAGGATTTTGGAGCGAAGATTGGGGATTTTGGGCTTGCTAGGGTTAAGGCGGTGGAGGATCTGGGAATGGTGGAGGAGAAGAAGGAAGGGGTTGTCGAAATTGCGGTCGAGGAGTTTGGGGTGACGGAGGAGGGGGAGAGTGTGAGTGTGGTGGATGTTGACCGGTCGCCGGAGAGTTGTCCTGTGAGGGCTGTCGATTACTCGGACGCGTCCCCGGTAGGGGGTGATAAGTTGAGTGTGGTGTCGGATGGGTGCTTTGAGAGTGTTGATAGTGAGAATGTGAATTTGAACAAGAAGAAGGGTGGTGGTGGTTCAGGGAGGGATTGGTGGTGGAGGCAGGAGAGTGGGGCAGGGGGGGAATCGGGGAGAGTGAAGGATTATGTAATGGAGTGGATCGGGAGTGAGATTAAGAAAGAGAGGCCCAAGAGTGAATGGGTTGATTCGTGTTCATCTTCTTCTCCTAAGGTGGAGAACGAGAATGGGAATGCTAATGGGAATGAGAAAAGTAAAAAGGAGAGGAAGAGGCTGGATTGGTGGGCGTCTCTCGATGAGGAGAAGGTTAAGAGTAAGGTGAAGAAGAATCGGAAGCCGAGGGAGTGGTGGAAGGAGGAGTTTTGTGAGGAGTTGTCTAAGAAGAGTAAGAAGAAGAGAGGTTTGGAGTGGTGGCAGAGGGAGGAGGAAGGGGTGGAGCAGAAGAAGAAGAGGAAGAGTAAGGGGAGTAGAGGGAGTATTGATTGGTGGTTGGATGGGTTGAGTGGGGAGATAAGGAACAATGGGAGGAGGAACAGCCAGGATTGGGGGATTAGTGGGGATGTGCCGAAGAGTGGTGGGATCAGTAGCACTCCTAGTATGAGGGGGACTGTTTGTTACATTGCTCCTGAGTATGGTGGAGGAGGGCAATTGTCTGAAAAGTGTGATGTGTACAGTTTTGGGGTTCTGCTTTTGGTTCTGGTGGCGGGGAGGCGGCCGCTGCAGGTGACCGCATCGCCGATTTCTGAGTTTGAGAGGGCCAATTTGATTTCCTGGGCCAGGCAGCTTGCTCACAATGGGAGGCTTTTAGATCTTGTTGACACTTCTATTCATTCATTGGATAAGGAGCAGGCGCTGCTCTGCATCACCATAGCCTTGTTGTGTTTGCAGAGGTGCCCAGGGAAGAGGCCTTCCATGAAGGAGGTTGTGGGAATGCTCAATGGGGAAGCTGATCCACCACATTTACCGTTCGAATTCTCACCGTCACCGCCGTCAAATTTCCTGTTCAAGGGACGGAAGAAGGCTCGGTGA

Promoter Sequence:
>Vu_08012::LG2:1808517-1810517(+)

ATTTTTAGTAATATTATTTAGACTATTTTTTTTATAAATATATACAAAAGATAGTTCATTTGGTGTACATATAAAATATGTTAATCTTATAACATTCTTTCAATAAATCACCTAAGTTGCTCCAACACTAAAGCATACCATAAATCACTACGTAACATATTAACGTTTTTTTTTTAAATATAAAGACATAATATTTTTTTTCACTCATTTATAATCATTCACATTCTATTTTTCACTTATTTTTTCTTTTTTCTACCATTACTAAGTGAATATTAAACATAATATTTTTTGTTGAAATGATTAATAATATATATTAAACAGGGTTTAATATTTATACACTCCGTATAAATATTATGAAAATAAACATGTAATACACTTATTACATAAATTAATCCGAGATGAAGTAAAATCTACACTCCTGAGTGCATAATTTATTTTTTCTATGGTTTTTAACAAAATACAGTATTTGTTTTATTTTTAATTAATTAATATCTTAGCGAATGAATAGGGGTGTGTGTGGAACATGGTTGGTGCATGAGGCACGTGACAAGAGATCACGTTCGCCACGCCCACGCGCACTTCCTGTGCTCGTGTTTACACTCCAAAGGAGATTTACTCGCTTTTCAACGGGATTTTCTCGTTGACTTTTCTTCTGTCATCAAAAGCAACACAAGTTCCAGTAACATCATCATTCAACATTATTTTTCTTTTATCTTTTTACAACCATAAATTCATTTTATTTATTTATATTTTAATTTCTCACAAATCCTATATTCCCAAATTGCCAAAATAGACCAAATCAAATTAATTTAAAAATGCAATGTAAAAATATTTAAATTGAAAAAACATCAGAATAATAAAAAGGCTGGGGCACGTGTCATTTCATTATTTGAAAAATGTACTAAAAACTGTATTTTAAAAAAAAATCTATTTAAATCTAATATATGCAGTTCAACTTAATTACTGTCAGGTTTCCTAATAATATATTTTTAATTATAAAATTGATGAGTGGTATTTCTTTCTCTAGAACATAATGTGAATAATTTAAAACATTTAATAGAAAAATGAAGATATTAACCACTCATAATCTCAAATAACAGTTGATAATTTGGTCTCTTAATTAAGCATTAATATAACGTTCCCTATGGCTTTGCCTTCTTCTTTAATATCTTTAATTATGACACTAACACACCAACTAAGCATAATAAAATAACATATTTATCGTATAATTTAAAAAAAAAAATCAAGAAAGAGAAGGAGAAGTAATTCAAAAGGACAAAAATACACCCATTTTAAGTTAAATTATTTAAAAATTAATAAGTAATTATTTCTTTTCAATTTTTTACAATTTATTGCACAATGTAACATGTTGGACAGATGATTAATTAAATGTGGAACCTAAAAGTTTGTACATTTTAAAAAAGACATCTGTTGTATATGAAAAAAGATTTATTAAGACAGATAAACAGAAATTAATGATTTGGTTGTTTGAATGAACAGCAAAAGTATTTTAAGCCGTGTTTGTTTAGATTTTTACCAATTTTGGTAAAATATGTCTACAGCATTTTTTAATAGACAGGTCCACAAGCACAGTGGCACAGTGCAACTCCCTCCAAACAGAGCACTTATGAAAGGTTTGAACTTTTTTTCTCCAACTTTCTTCAATAGTTTAACTATCACCCTCACTCACCTTCTAATACTTTATTAATATTAGGGAAAAGGAAAAGAAAAGGGAATCTCAAGATAATTTTATTTTTTATTATTATTCATCAAAAGCAACCCTTTATTTATTTATTATTTGTTTATTTAAATATTTATTTATTTCATTTATCTATCACAATATTGGTTGGCCAAGGGAACAAAATAAGTCACTCCTCACTGCTACTTCTTCTTCTCAACACAAAAGAAAATTCATCTGTTCACTTTCTCTTTCTCTTTTCTCATGAATGGTTAACGTCAAAATTAACATTTTCATTTCCTTCTCTTCGTTTTTACAGCCA

Gene Sequence:

>Vu_08012(+)