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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_08003 LG2 1554642 1558713 PREDICTED: transcriptional regulator STERILE APETALA
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/G 1556560 intron_variant
A/T 1556578 intron_variant
T/C 1556688 intron_variant
G/A 1556714 intron_variant
A/G 1557136 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_08003.1
MNEVLPEPFLEALANQVAIDAANYNGRLAAAQALAYFFRVCSTWREVSRSDLLWEHLTRRIWRRTFRVRDTWHTEYINWHRTATNFETGRLSFLTPRFDPSEHRRGLICRCLSLSDTRLACGFVDGTVRVFDLETYDHVSTYLSDHGHLFGPYSRSVSGIIITDSDITFARLDGDIYVDAINVHGQSQARRVVSGFVMNSGVLVGFAGTRRRWVGLFAGIAEGAFQVWNAESGERLFLGGSLTDPETVMGWHMLTELVDPVGRVRVTEDEFVVACTGLRLICFNAWNPEVLLRDEMSASGFVVSSMDVSSEAFVVVERGGVGTVWRVGTMELMSRFVLRSSWVRGLWGCMNLGYVVTYSPNPTPFLRVWNIEQEEGRLCVRVFLRAGEVNSMVGDDRHVAISSNNINLLDFGVQNP*


CDS Sequence:
>Vu_08003.1
ATGAATGAGGTCTTGCCTGAGCCTTTTCTTGAAGCTTTGGCCAACCAAGTCGCCATTGATGCTGCCAACTACAATGGACGTCTTGCTGCTGCTCAGGCCCTTGCATATTTTTTTCGGGTTTGTTCCACGTGGCGGGAGGTGTCGCGCTCGGATCTGCTGTGGGAGCACCTCACGAGGCGCATCTGGCGAAGGACGTTCCGAGTGAGGGACACGTGGCACACCGAGTACATCAACTGGCATCGGACGGCTACGAACTTCGAGACTGGAAGGCTGTCGTTTCTGACTCCGCGCTTTGATCCTTCGGAGCATCGCCGGGGCTTGATCTGCCGCTGCCTCTCCCTTTCCGACACCCGCCTCGCGTGCGGCTTCGTAGACGGCACCGTGCGGGTCTTCGACCTCGAAACCTACGACCACGTCAGCACCTACCTGTCCGACCACGGCCACCTCTTCGGGCCCTACTCGCGCTCTGTCTCGGGAATCATTATCACCGACTCCGACATCACCTTCGCCAGGCTGGACGGGGACATCTACGTGGACGCTATCAACGTGCATGGGCAGAGCCAAGCGCGGCGGGTCGTGTCGGGGTTCGTGATGAACAGCGGGGTCTTGGTCGGGTTCGCGGGAACGCGGCGGCGGTGGGTGGGTCTGTTCGCGGGGATAGCGGAAGGTGCGTTCCAGGTTTGGAACGCGGAGAGCGGGGAGCGCCTGTTCCTTGGGGGGTCGTTAACTGATCCGGAAACGGTTATGGGGTGGCACATGCTGACGGAGTTGGTTGACCCGGTGGGGCGGGTGCGCGTGACGGAGGATGAGTTCGTGGTGGCATGCACTGGTTTGAGGCTGATCTGTTTCAACGCGTGGAACCCGGAGGTTCTTCTACGGGACGAGATGTCGGCGTCGGGGTTCGTGGTGAGTTCGATGGACGTGAGTTCGGAGGCGTTTGTGGTGGTGGAGCGTGGTGGGGTGGGAACGGTTTGGCGCGTGGGGACGATGGAGTTGATGAGCCGGTTTGTGTTGAGGAGTTCGTGGGTTCGTGGGTTGTGGGGTTGCATGAACCTTGGGTACGTGGTAACCTATTCTCCTAACCCTACGCCATTCTTGAGGGTTTGGAACATTGAGCAAGAAGAAGGACGGCTGTGTGTGAGAGTGTTCCTGCGAGCAGGAGAGGTGAATAGCATGGTGGGTGATGACAGACACGTGGCTATCTCTTCCAACAACATTAACCTATTGGATTTTGGTGTACAGAATCCTTAG


Promoter Sequence:
>Vu_08003::LG2:1558713-1560713(-)
AAACACTAATATTGAAGTTTCCTCTCAATTTTATATTTTGCAATATAGCACAAGTTTAAATGCTCCATTAATGTAGAGACAGAAAGAGAAAGATAATGCTCCATTAATGCAGAGAGAGAAAGAGAAAGATTGTTAAGGATAGTGGGGAGGTGTAGGGTATTTTTGAAATAAAAGAAAATAGTGGAAAGGTGCAAAGTATTTTTGGAATAAAAGAAAACAGTGGAGAGGTGCAAAAGTACTTGGGGGTGGTGGAGGGAGCAACACCGCTCAATGACTCGAGTTGTAAAAGTCAATTCTTTATTAAGTGGTGGACCAGCCCAATCCAACTCAATCAAACTTATACAATCTAGGTTGGCTTGTTTTGTCACTCATAATTAATATCGTTTAAACAGTAATGAATTGAGATTTATTCTCTCTTTTTGTTTTCTATCCCTAAGTAATATTAATACCTATAAATTTATTATCCTTTAAACAATATTAACATTAATTTAACATAAAATCACATAATTTTTTTGTTCTAAAAAATATAGAGACCTTATTAAGAATAAAAAAATATAAATAAACATTAAATCATTACAACTAAAATTATACTAAATCTCATAGAAACATGCAAAAGTTTAATCCAATGTCATTCTAACACATGATTGAATTTCAATTATATCCTGTTAATCTACTTTAAACTCAGCCCAAGGCTAAAAAAGGACGACATTTTTTAGTTTAAGGAGTAAAAACGAGTCATCTCAACCAGTTTCTTCTACACTAAACAAAACAAATAAAAATAACCTATTTACATATACCAGTCATCAAACTTATCCAAACATCTCATTTAAAATAAATTTAGTTGCAGACAAAATATGACACGATAATTATTTTATGATTTAGAAAAGCAAAGTGTGGTTGTGTTATGAGCAGGCAAAAGAAAAACAAATAATAGTGGAACAGTTCAATTCAATTATTATTTAAATCTACATGGATAAAACAAAACCACCTCCATACTCTCTCTCACATGATAATTTAATCATAAAGTATTTGAAAATGAATTAATCTAGACAGTCGCCAAGTCTAGTTTAAAAACAATAAAATTGACCAATGAAAAAGTGTCCTTAAAAGTAATAAATAAATTAATTTCAGCAATCGAAAAATCCACTTCAGACAAAGTAGAAGAAGAGGAAAATACACACACACACACACAGATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAAGATAGAGAAGAAGAGGGTTTGAGGAGGACCACCACCACGTAGCATTTTAAGTATGTTTGAAAACACCTGAAGACAATGGTACCAGTGGAGTTGCCATAGCTGGATTGAAACCCAGCCCAAAGCAGTCCCTGCATTGCAGCACGGGAACATCTCCAGAAAACACAAATAAATATCATTAATGTAAAAAGGACCAGCTAGGGGAAGGAGATAGTGTAAATAATATATTACATTTATTTGGAATAATTGTTTTATTTATGGTAGAAAGAAAAGAAAAAAAAAAAGAAAAAAAGAAAGAAAGAAAAAGGCAATAAGAAAGGGGTGTGTGTGTGTGAGAGAGAGGTTTGGTTTAAAAGTGAGATAAACGGAAGCTAAAGGGAAACACAGACACATATGATATAACCAAGAATTCCCAGACATCTCCTTTTGGGTCCCTCACTTTGTGTCCTTATCTTCTACCTTTTTGTCCTTGTTCCTTTCCGGTCTGGTCCTCCTTCCCCACTTTTATAGCCACCACCCACTTCACTCACTCATGTCTTCTACTTCTTCTTCTTCTTCTTCCTCGTCATCATCGTCATCATCAACTTCAGCCCCATATGATGTTGTTGCTGCTCCTGATATCCCTGGCCCTAGTACGAGGAGAACCGCTCAATTTGAAGGCCCTTCCTCCTCTCGTCAACGTCCT


Gene Sequence:
>Vu_08003(-)
ATGAATGAGGTCTTGCCTGAGCCTTTTCTTGAAGCTTTGGCCAACCAAGTCGCCATTGATGCTGCCAACTACAATGGACGTCTTGCTGCTGCTCAGGCCCTTGCATATTTTTTTCGGGTATTTTGTTTTTTTGTTTTTTGTTTTACCTTTTTTCCTTCGTCTCCATCTTCGTCTTCCTCTTTACCCCTCGTTTCGCTTTTGCTATAAAAAACATGCAATCATTGTTCACATTGCCTGTGTTTGCTTTGCTAAATCTGACCAAGGATTCTCAATTTGCTTAAAATGAAGATTTGTAGAATCTTCAGCATGTGTAACTGATAGCTTTTTCAGTTCCGTAACTGGACAAAATATTGGTCAAGTCAAACATGAATCTAGCATTGCAACCTGCAGACGCTGATTCTTTTTTATTTTCAATAAATATCAACACCATGGACTAACTTAATTATATTATATGTAATATTATTATTTTCATTATATCAACATCCCTCTTTTTATGTTTGTGCGGCAAACTTTTTTTCCTGTGTTTAAACTTTAGAGGCAAAGATTCAGCCGAATGGATAAGGAGACACGAGTGCCGATTTAGGTTTTAAGTTTTAGATGCTTCAAGCATCCGAGAAGAAACTGTTCCTTGAAAGCACTTTACGTGTGTCTTTTTCAAACCAAATATGTGTGTCCCTTTCAAAAAAGGGTGTATTTTTCTCCTTTGCAATGTTTGTTCTCTCTTCCCCTTCAAAAATGTCTAGTTTTGGACCTCCTTTTCACAAACCAATCAAAATGCTCACACTGCCTTCGATTTGCCGTTTCCCTTTCTCGGCATGAATCCTTTTTGACTGAGCTTTTTCCTGCTATCTAGGCTAGAAGATCCATTGCATGCCTTTTTTTTATCTCAAAATATATAGATACCAGTTTTTTTTTTGTTTGAAAAGAAGTTGCTTTCTTAAACAATAACACAAGGATGGAAGCATAAATAGTTATTAATGTCTCATACCCAGCGTCCTTGCAAGTGTACCATTTCCATATATAGTCTGTTGCATATATATTTCGGAAGCACACCATTTCTTTTTCTTTATTTATTATCGAGATCAGTGAGAGAAGGTAACTGTCCACAGCATTAAAATAATTAATCTTTTTCTATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTTGTGTTCAAAGAACAACCTTTCCCGGTGTGCTTCGAAGCAATGGAAAACTGGAATCAGATTTCGTGTACATTTATGCCTACCGTGAAAATAATAACAATTTTCCTTTACTTGCATTCATAAAACTAGAGAAGAGTTACTTTTATCAGTTAGAGTACCCTTCTACTCTATTGGAAACAACCAGTTGCATGATTTTTGGTTGCAGGATAAGCCTTGCACCTTCTCAAATCTCAATTAGGGTTTGAATTTTTTAATAATCGGTGATTAGTGGTTGGCTTAATATTTTATTTTATAATCTAAAAATGGGGTCAAAAAAGCAGCTATTGCATAACGCCAAAAGGCACATGGAGCCCTATTCTTGTCGTGACGACACTCCATTCCTTTTGTTTCTATCTGGGAAGTTCACACCTATTATAATTTTAGTTTTCTTTCCCAATAAATAAAATAGTATCATATGCTGTACTATATACGTTATGATAATTACACACACACACACAACAAAGTTGGAACTTGGGAGATGGGGCATGCATATTGTTTAGTTGTACTTATAAACTATGACCCCTATATATAAAGGTGGATCTATTTGGATAAATATATGTTCGAACGCCTGTTATATAAACAGAGTTTCATAATTAAAAACATATGAAGCTATGAAAGTTTGTTTTTTTCTTTTTAAAGTGTTTGCTGTGAACCCTTGTTTATGTGATGTTTTCTTTAACTGCTAAACAACAATAGTTTGTCCAAGAATTTGTTACTCAAGTTTTTTTACCTGGGTAGGATTGGACTGGTCTTTGTGGGCGTGAATAGAACCAGAGATTCGGTGTTTGGAACAAGACAGGCACTTGGGCATACCTTTCTTGGAAATGAAAGTGAAATGTTTGTGGGAAAGCACGCTTTTCATACCATGTTTACATTTTACACACACATGCCTACACGAACAGGAACTTAGATATTGACTAGTTTCGTTATCTAGCCGTGTACCTGCAATGGACCACATAATAACACTGTATCTTCTTCTTTTCGCTTGCTACTTCCCCACTCTTTTTTCTCTCTAGGGCATGTTAATTAGCCTTACCCTTTTGAACTGCATGATATATATCTTATGGTGGTGGATGATGGCGAAGTATGTATGAAATGTAGGTGGCAGTGTATGTATGGATATTTCATACCATACGTAAAGTATGCTATATGGCAGAGGCATGATTATCTAAGATTCTGAAGTATCTAACTGAAAATAAGTACACTGACATGATAATAATGAAAATTAAATGGGTGTAATGTTGTTAATTTGAAGCTGATAATGTGGTCTGTCTCTAGTCCCGAGTATCTGTTTATCTGCTACGCGATGTCATTGCTATGGTTTGCTTGGTTCCTGACGCGAATGATGGTTACCTCTCTGCTCCCTCCCAGCTAGCTGAGCTGAGTTTTAGCTTAGCTTAGCATAGCTACCTGCTTCTGCCATCTTCAATGTTTCTCTCTCCAGTCTTTCATCCATTGATACCTACTTATAGTTAACGAAAAGCAGGTAGATATTAGTGCACATTTCTTTTTGTTTTACGTGAGATTATGAAAATAGAATTTCTTGGCTTTCTATTTTTGTGGAAAAGAGTTCTAGGGACTTGCTCAATTTATCAATGCAGCTTTCGTGAAACGGAAAGCTATTTTAACTTAGAGCTAGGTTGGTTGGTTCATATGGAGTTGGGTTCACAACGGTGATGATGATTGAAAATTTGTGCATTGGCCATGCAGGTTTGTTCCACGTGGCGGGAGGTGTCGCGCTCGGATCTGCTGTGGGAGCACCTCACGAGGCGCATCTGGCGAAGGACGTTCCGAGTGAGGGACACGTGGCACACCGAGTACATCAACTGGCATCGGACGGCTACGAACTTCGAGACTGGAAGGCTGTCGTTTCTGACTCCGCGCTTTGATCCTTCGGAGCATCGCCGGGGCTTGATCTGCCGCTGCCTCTCCCTTTCCGACACCCGCCTCGCGTGCGGCTTCGTAGACGGCACCGTGCGGGTCTTCGACCTCGAAACCTACGACCACGTCAGCACCTACCTGTCCGACCACGGCCACCTCTTCGGGCCCTACTCGCGCTCTGTCTCGGGAATCATTATCACCGACTCCGACATCACCTTCGCCAGGCTGGACGGGGACATCTACGTGGACGCTATCAACGTGCATGGGCAGAGCCAAGCGCGGCGGGTCGTGTCGGGGTTCGTGATGAACAGCGGGGTCTTGGTCGGGTTCGCGGGAACGCGGCGGCGGTGGGTGGGTCTGTTCGCGGGGATAGCGGAAGGTGCGTTCCAGGTTTGGAACGCGGAGAGCGGGGAGCGCCTGTTCCTTGGGGGGTCGTTAACTGATCCGGAAACGGTTATGGGGTGGCACATGCTGACGGAGTTGGTTGACCCGGTGGGGCGGGTGCGCGTGACGGAGGATGAGTTCGTGGTGGCATGCACTGGTTTGAGGCTGATCTGTTTCAACGCGTGGAACCCGGAGGTTCTTCTACGGGACGAGATGTCGGCGTCGGGGTTCGTGGTGAGTTCGATGGACGTGAGTTCGGAGGCGTTTGTGGTGGTGGAGCGTGGTGGGGTGGGAACGGTTTGGCGCGTGGGGACGATGGAGTTGATGAGCCGGTTTGTGTTGAGGAGTTCGTGGGTTCGTGGGTTGTGGGGTTGCATGAACCTTGGGTACGTGGTAACCTATTCTCCTAACCCTACGCCATTCTTGAGGGTTTGGAACATTGAGCAAGAAGAAGGACGGCTGTGTGTGAGAGTGTTCCTGCGAGCAGGAGAGGTGAATAGCATGGTGGGTGATGACAGACACGTGGCTATCTCTTCCAACAACATTAACCTATTGGATTTTGGTGTACAGAATCCTTAG

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