Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_07796	LG1	108961511	108964589	PREDICTED: scarecrow-like protein 13	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, cellular response to hypoxia, regulation of transcription, DNA-templated, response to heat, cellular response to hypoxia, regulation of transcription, DNA-templated, response to heat, regulation of transcription, DNA-templated, cellular response to hypoxia, cellular response to hypoxia
Cellular Component	located in	nucleus, nucleus
Molecular Function	enables	DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
C/T	108961643	upstream_gene_variant
C/A	108961734	upstream_gene_variant
T/C	108961735	upstream_gene_variant
T/C	108961832	upstream_gene_variant
G/T	108961911	upstream_gene_variant
T/C	108961985	upstream_gene_variant
C/T	108961993	upstream_gene_variant
C/A	108962006	upstream_gene_variant
T/A	108962093	upstream_gene_variant
G/A	108962198	5_prime_UTR_variant
A/G	108962714	5_prime_UTR_variant
T/C	108962765	synonymous_variant	p.Ala11Ala
C/T	108962834	synonymous_variant	p.His34His
G/T	108962919	missense_variant	p.Ala63Ser
A/G	108962924	synonymous_variant	p.Pro64Pro
G/A	108962968	missense_variant	p.Ser79Asn
G/A	108963042	missense_variant	p.Asp104Asn
G/T	108963096	stop_gained	p.Glu122*
C/T	108963142	missense_variant	p.Pro137Leu
A/G	108963189	missense_variant	p.Ser153Gly
G/A	108963202	missense_variant	p.Gly157Glu
G/A	108963221	synonymous_variant	p.Lys163Lys
G/A	108963225	missense_variant	p.Asp165Asn
A/T	108963257	synonymous_variant	p.Arg175Arg
T/G	108963283	missense_variant	p.Val184Gly
G/A	108963303	missense_variant	p.Asp191Asn
A/G	108963333	missense_variant	p.Met201Val
T/C	108963338	synonymous_variant	p.Asp202Asp
A/G	108963362	synonymous_variant	p.Ser210Ser
G/A	108963724	missense_variant	p.Arg331Gln
G/T	108963730	missense_variant	p.Gly333Val
G/A	108964113	missense_variant	p.Ala461Thr
G/A	108964211	synonymous_variant	p.Ser493Ser
C/T	108964215	missense_variant	p.Leu495Phe
C/T	108964264	missense_variant	p.Ala511Val

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_07796.2

MQTSQKHASSAGVHFYRHQPVQGIYHVLQSDLCHDARHSSSQETSFSFESCKEQYFTLESCPAPTTGFTECDDSPSYASVSSKRSPFSPQGSHSCYSDHHQSSDNTYGSPISGLSSVDDGHELKHKLRELEISLLGPDESDIEDSFGCCVKGSRLDGASQLAKHDWEQIAENISRFDLKGVLRVCAQAVSDEDVPTARGWMDNVLGKMVSVSGDPIQRLGAYLLEGLRARLESSGHLIYKSLKCEQPTSKELLSYMHILYQICPYWKFAYISANAVITEAMANESRIHIMDFQIAQGTQWYLLIQALAHRPGGPPSLRVTGVDDSHSIQARGGGLEIVGERLSEFARSCGVPFEFHTAAMSGCDVVRGSIEIRPGEALAVNFPFVLHHMADESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFYRFLETLDYYTAMFESIDVACPRDDQKRVSAEQHCVARDIVNMIACEGAERVERHELLGKWRSRLSMAGFKQCQLSSSVIAATQNLLKDFSKNYRLEHKDDALYLGWMNRHMATSSAWR*

>Vu_07796.1

CDS Sequence:
>Vu_07796.2

ATGCAAACGTCTCAGAAACACGCAAGTTCGGCTGGTGTACACTTCTATCGCCACCAGCCTGTGCAAGGCATCTACCACGTTTTGCAGAGCGATCTATGCCACGATGCCCGTCATAGCAGCAGCCAGGAAACAAGCTTTTCTTTTGAAAGCTGCAAGGAGCAATACTTCACTCTGGAATCATGCCCTGCACCAACTACCGGTTTCACGGAGTGTGATGATTCTCCTTCCTATGCCAGTGTATCATCTAAAAGGAGTCCATTTTCTCCACAAGGTTCTCATTCGTGCTATTCAGATCACCACCAATCCTCTGACAACACCTATGGATCGCCAATAAGCGGTTTGTCTAGCGTTGACGATGGGCATGAACTGAAGCACAAACTCAGAGAACTGGAGATTTCATTGTTGGGGCCTGACGAATCGGACATCGAAGACAGTTTTGGCTGCTGCGTCAAGGGCAGCAGACTCGACGGAGCATCTCAGCTGGCTAAGCATGACTGGGAGCAGATTGCTGAAAATATTTCACGATTTGACCTGAAAGGAGTCCTCAGGGTATGTGCGCAGGCCGTGTCTGATGAAGATGTTCCAACAGCAAGAGGGTGGATGGATAATGTATTGGGGAAAATGGTATCAGTCTCTGGAGATCCGATTCAGAGGTTGGGTGCTTACTTGTTGGAGGGGCTTAGAGCAAGGTTGGAATCATCAGGGCATCTCATCTACAAATCCTTGAAGTGTGAACAACCAACAAGCAAAGAACTGCTGAGTTACATGCACATCCTGTACCAGATTTGTCCATACTGGAAGTTTGCATACATATCTGCAAATGCTGTCATTACAGAAGCTATGGCTAACGAGTCCAGGATTCATATAATGGATTTCCAAATAGCACAGGGCACACAGTGGTATTTACTTATCCAGGCTCTTGCACATAGGCCTGGGGGACCCCCTTCCCTTCGCGTGACCGGTGTTGATGATTCGCATTCGATTCAAGCTCGAGGTGGAGGACTTGAGATTGTAGGAGAAAGGTTGTCAGAATTTGCGAGGTCTTGTGGAGTTCCGTTTGAATTTCACACTGCTGCAATGTCTGGCTGTGATGTTGTGCGAGGAAGTATTGAAATTAGACCCGGGGAAGCTCTGGCAGTAAATTTTCCTTTTGTTTTGCACCACATGGCAGATGAGAGCGTGAGCACCGAGAATCACAGAGATAGATTGTTGAGGTTGGTTAAGAGCTTATCTCCCAAGGTTGTCACCCTTGTGGAGCAAGAATCCAACACCAATACATCTCCTTTCTTTTACAGGTTTCTTGAGACCTTGGATTACTACACTGCCATGTTTGAATCCATTGATGTGGCCTGCCCCAGAGATGATCAGAAGCGCGTGAGCGCAGAGCAGCACTGTGTGGCACGAGACATTGTCAACATGATAGCCTGTGAGGGGGCTGAGAGAGTTGAAAGGCATGAACTTTTGGGAAAGTGGAGGTCGAGACTTTCCATGGCTGGATTTAAACAGTGCCAATTGAGCTCTTCTGTCATCGCTGCTACCCAAAATCTCCTAAAGGACTTCAGTAAAAATTATAGGCTTGAACATAAAGACGATGCCCTTTATCTTGGTTGGATGAACAGACACATGGCTACCTCTTCTGCTTGGAGGTGA

>Vu_07796.1

Promoter Sequence:
>Vu_07796::LG1:108959511-108961511(+)

TAGTTTAGATGATGTTTGAATAGAGAATTCAAAATTATTAATATTACACGCTCATATCGCTCATATTGTTGATGTATCATGAGACTTATTAGAATGATTTAACCATTTTAAATTATGGCACACAAATTTTTAAATAGGTGCAATTTTTAAAATTTTAATGTTATGTTTTTCTTGTAAATTCTTCATACTTATTATACCGTATGGTCTAGACGATCATATAAGTGTCCCATAACAAACAAATGTCCCATAACAAAATTAGACGGACGATCTTAGAGAGCAGCACGCGGGTAAACATCAAACGTGACATAATCAACAAGCGATTACAAACAGGAAAGTGTTGCCGGTCTCAATCAATAATCAGGATTCCCTGCAAAAATTAAAATAACAAGTAATTAATGATATTGGACCGTGATTAAAATTTCACTAATTTTAAGCCCATACCAAACACTATAAATAGGATCAAAGATAAGAGGTAATTGTTGGTATTTAATACATATTTAAGTGACTATCTCACATCCGAAATACTTATAAACTTTTCGAGGTTGAATAATATTTATGCAAATTAAACCTATAAGAACATAGAATTATAGAATGATAATATCAAGCTTTAAGAAAGGGAGTTATAAGGTTTGTTGTAGTGGTAAAAGTTAGAAAAGAAAGTGTGAAAGTTGGAGTCAACTTCTTCCATTGTCCCTTTAAAAAGTCTTCAAAATTTTAGTTGGAAAAATTAAACTTACAATCTCTCTTATCTTTCTTTCATTTGGATATTTTTGACAGTAGTGATTTATAATATTCTCCTTTAATTATATATATATATATATATATATATATATATATATATATATATATATACTTATTTCTAATACTGCTGTGATGCAGCTCTTGTATTGTTACTGCTTGGAAGTAACCGTCGTAGACAAAAATCGATGAAGAATGTTTTATTATTTATTTATTTATATATTTTATTATCAACCTTTGAATATTGTAAAAAGAAATCATTTCCATAAATCCGTTTTAAAAAATAATTATTAACTACCTTTATACGATTTAACTCTGTATTCTACATTATCCATTGATTTCAATAGGTTAAAGAGTAAATCGAGATGGAAATTATATATGTACACAAGTATAAAATAAATAAAATTAATTAATTGCTATTTCATGCTTATATTAAGTCTTAATATTTTTTTCATCATTGATAAAATTTTATTACTAGCATATCAAATTTTATAATTTTACATAAACACATATTCAATTTTCTTTAGCAAAATGAATTTTAAAAACACATATATCTTGCATCTTAACAACTTCAATTTGAACTCTTTCTTTTCATCCTTTCATTGCCTTTTCACCCTCCTCCTATACAAAGAATGCCTTTTCACCCTCCTCCTATACAAAGAAAGTCAAAAACATTTGTTTAAGAAAACTTAAAAAATAAAGAATAATAATATTTTGACAACATTTGATTAATAATATTTTAGTAAAATTTACGTGTCAGTGATCGATTTATATTAGTATTTATAATTATTATTATTAATTATAGAATATTTTGAATAAATAACATAATAACACATAAATAGTTAAAATTTTGTCAATATTATTATCGTGAGATAAAATCTTCGATATTTATTTTGACCGTATTTTATTCAAATAAAATATATTTAGAAATTTAGAAATTCCCTGAATGATGTATTGGTTGAGATCATACTTGACGTGGTGATGAACGAGTTGATGATAATTTATGATTAGTGAGAGAGCACATGGGAAGGGAGTGTTGAAGAAGATTGTTTATGTTATGTTCAAAATAATTGAATTCCACCAATGGTAGTTTAGCTGACTTTCCTAGTTCCTTCCTTAACCTTGTTCAACCCAACCGAGTCATATTACATACGGATTTTTCCAACATGTGTTTTTTTAACTTCCTCGTAAATACCACTGTTTCGTACCCACCCTTTCTTTTAACTCCACTCATTATTTTTATATTATAAAATCATAACTCA

Gene Sequence:

>Vu_07796(+)

AACCACACCACAACTAGTTCATTCCTTTTTCTCTGCTTTCTCTCCTCTCTCTCTGTTAAACAACTCTGACTTCACCATCACACAGGTATGCTTTCCATCGACACTTCCTAGGTTTCAGCTACATCTGTTCATCCCTTCTGGACATTGCTTCATGCTTGTCTCATCTGATACATAATTTTTTCTTTCAATATTCTAAATTCACCCTTTTCTCCACACTCTCTACCTAGTATTCCCGTTTGTCAACCATTCAATTTACTGGGCTTCCAGGAACTGCTTCCAGCTTTATTTTATCAGCTAAAAAAAATTCATTCTTTTTATTATTAAGTATCTTGAGGTGAACTTCAAGCTTTTCACTTTCTGAACATGTCGACGATTTGCGAGTTTGGCAGTCGAAGGGAATGAATTTCTTGGCATGTATGATTGAATCTTACTTTTCTTTCTTCCGTTGTTGTTGGAAAAATGTTTTCTACAATTTATGGGTGCGTTTCGTCAATTCAAAAATACGCGTCACTGCTAGCGTATCTGATCAAAAGTTCTTTTCCTCGGAAACACGTCACCAGTAATATAGATTTTTCTTTTTTCTTTTTCTTTTTTCTGAGCTTTTTGGTTACCTTATTAACATAAGGAAATTCTCTTCGGTGTTCTATTATTTAATGATGTCTCGGTTGGGAAACTTAATTGGTTACTGGTGTATGATAACTTAAAGCGTATTTGAAATAATGAATAAATGTTGGGTGGTTTGTTTGGGATCCTTAACTGATAATTCAGATTCTGAAAATTAATCCAACCTCCTCTTACCTTTGAAGAAATCCTACTTCCACAAGAGTGAGTTTGCATCTCACGACTCCTGGAGAAGCTGTATAGCTCTCGGGAAGCTTGAATTTACTTTTCTTCAGCTCCACCTTACTTTTAGATCTTGATCTGTTAAATTGTTTCAATATATTTTTGTTTGGTTTATTCACCGTGAGGTGTTCCTGATAATTTTATCTTACCATGCAGACTGTGGTTCCTCAAAACATCTGTGAATTCACGATTATTGCATCTAGCAACTCGTATTAAACTGGCGGCTGTGAGTAATCTGCGAAATTTTACTGCTAAGCTCTGTGTCTCTGAATGAGCATCGAGTTACCCAGTGTGGTTGGGAGGAACCTTTGCAATCACAGAGATTGAGTACTTGTTATTGTCGTTAGTTTTTCTTGGCGTAGTTTCAAGTTCTTTCTAGATGCAAACGTCTCAGAAACACGCAAGTTCGGCTGGTGTACACTTCTATCGCCACCAGCCTGTGCAAGGCATCTACCACGTTTTGCAGAGCGATCTATGCCACGATGCCCGTCATAGCAGCAGCCAGGAAACAAGCTTTTCTTTTGAAAGCTGCAAGGAGCAATACTTCACTCTGGAATCATGCCCTGCACCAACTACCGGTTTCACGGAGTGTGATGATTCTCCTTCCTATGCCAGTGTATCATCTAAAAGGAGTCCATTTTCTCCACAAGGTTCTCATTCGTGCTATTCAGATCACCACCAATCCTCTGACAACACCTATGGATCGCCAATAAGCGGTTTGTCTAGCGTTGACGATGGGCATGAACTGAAGCACAAACTCAGAGAACTGGAGATTTCATTGTTGGGGCCTGACGAATCGGACATCGAAGACAGTTTTGGCTGCTGCGTCAAGGGCAGCAGACTCGACGGAGCATCTCAGCTGGCTAAGCATGACTGGGAGCAGATTGCTGAAAATATTTCACGATTTGACCTGAAAGGAGTCCTCAGGGTATGTGCGCAGGCCGTGTCTGATGAAGATGTTCCAACAGCAAGAGGGTGGATGGATAATGTATTGGGGAAAATGGTATCAGTCTCTGGAGATCCGATTCAGAGGTTGGGTGCTTACTTGTTGGAGGGGCTTAGAGCAAGGTTGGAATCATCAGGGCATCTCATCTACAAATCCTTGAAGTGTGAACAACCAACAAGCAAAGAACTGCTGAGTTACATGCACATCCTGTACCAGATTTGTCCATACTGGAAGTTTGCATACATATCTGCAAATGCTGTCATTACAGAAGCTATGGCTAACGAGTCCAGGATTCATATAATGGATTTCCAAATAGCACAGGGCACACAGTGGTATTTACTTATCCAGGCTCTTGCACATAGGCCTGGGGGACCCCCTTCCCTTCGCGTGACCGGTGTTGATGATTCGCATTCGATTCAAGCTCGAGGTGGAGGACTTGAGATTGTAGGAGAAAGGTTGTCAGAATTTGCGAGGTCTTGTGGAGTTCCGTTTGAATTTCACACTGCTGCAATGTCTGGCTGTGATGTTGTGCGAGGAAGTATTGAAATTAGACCCGGGGAAGCTCTGGCAGTAAATTTTCCTTTTGTTTTGCACCACATGGCAGATGAGAGCGTGAGCACCGAGAATCACAGAGATAGATTGTTGAGGTTGGTTAAGAGCTTATCTCCCAAGGTTGTCACCCTTGTGGAGCAAGAATCCAACACCAATACATCTCCTTTCTTTTACAGGTTTCTTGAGACCTTGGATTACTACACTGCCATGTTTGAATCCATTGATGTGGCCTGCCCCAGAGATGATCAGAAGCGCGTGAGCGCAGAGCAGCACTGTGTGGCACGAGACATTGTCAACATGATAGCCTGTGAGGGGGCTGAGAGAGTTGAAAGGCATGAACTTTTGGGAAAGTGGAGGTCGAGACTTTCCATGGCTGGATTTAAACAGTGCCAATTGAGCTCTTCTGTCATCGCTGCTACCCAAAATCTCCTAAAGGACTTCAGTAAAAATTATAGGCTTGAACATAAAGACGATGCCCTTTATCTTGGTTGGATGAACAGACACATGGCTACCTCTTCTGCTTGGAGGTGAAACTGAGTGATTAGTATCTCGTCCTCCTTTTTGACCTTTAACTGAGTGTAATTTATCATATAGTTTCTCCTCAGGAAATGTGATTCACCTCTTTTCCATATACTGCATTCTGCAGAATCTCAAAGCACGTTGTAAATGCCAATACTGAAATGAAAGAAAGAACCAAAAATAAACGTCTGCTATGACTTTAGTGCAGTTTTCCTTGCC