Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_07777 LG1 108839799 108841888 PREDICTED: nuclear transcription factor Y subunit B-6-like isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   abscisic acid-activated signaling pathway, positive regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated, response to water deprivation, positive regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, abscisic acid-activated signaling pathway, response to water deprivation, regulation of transcription by RNA polymerase II, positive regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, abscisic acid-activated signaling pathway, response to water deprivation, positive regulation of transcription, DNA-templated, abscisic acid-activated signaling pathway, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   is active in   CCAAT-binding factor complex
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   protein binding, protein binding, protein binding, protein binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein binding, DNA-binding transcription factor activity, RNA polymerase II-specific, protein heterodimerization activity, DNA-binding transcription activator activity, RNA polymerase II-specific, protein binding, protein binding, DNA-binding transcription factor activity, RNA polymerase II cis-regulatory region sequence-specific DNA binding
Pathway   B 09151 Immune system   C 04612 Antigen processing and presentation [PATH:ko04612]
SNP Position Effect Amino acid change
C/T 108839815 synonymous_variant p.Glu215Glu
G/T,* 108839854 stop_gained p.Cys202*
G/*,A 108839859 missense_variant p.Pro201Ser
T/C 108839905 synonymous_variant p.Gln185Gln
G/T 108839909 missense_variant p.Pro184His
G/A 108840008 missense_variant p.Pro151Leu
G/A 108840183 missense_variant p.Arg93Cys
C/T 108840228 missense_variant p.Ala78Thr
G/T 108840327 missense_variant p.Arg45Ser
C/T 108840340 synonymous_variant p.Gln40Gln
A/T 108840932 upstream_gene_variant
T/C 108841259 upstream_gene_variant
C/T 108841288 upstream_gene_variant
A/T 108841383 upstream_gene_variant
G/T 108841696 upstream_gene_variant
A/T 108841777 upstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_07777.1
MENGGFHGYRKLPNTTNSAGLKLSVPDMNNTNVRQASGENSNNNHAADETNNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYMEPLTMYLHRYRELEGDRTSMRGESLGKRTIEYAPMGVGVPTAFVPPPFHPNGYYAPAMGTYVAPPNPASSHHHGMPSTEPSSRSM*


CDS Sequence:
>Vu_07777.1
ATGGAAAATGGAGGCTTTCATGGCTACCGCAAGCTCCCCAACACCACCAACTCTGCTGGGCTGAAGCTGTCAGTGCCAGACATGAACAACACGAACGTGAGGCAGGCATCTGGAGAGAACAGCAACAACAACCACGCAGCAGATGAGACCAACAACGAATGCACCGTGAGGGAGCAAGACCGTTTTATGCCAATCGCGAATGTGATTAGGATCATGCGAAAGATTCTCCCCCCGCATGCCAAGATCTCTGATGATGCCAAAGAAACAATTCAAGAGTGCGTGTCTGAGTACATCAGCTTTATCACCGGAGAGGCAAATGAGCGTTGCCAGAGGGAACAGCGCAAGACCATAACTGCTGAGGATGTGCTTTGGGCCATGAGCAAGCTTGGATTTGATGATTACATGGAACCACTGACCATGTACCTTCACAGGTATCGTGAGCTCGAGGGTGACCGAACCTCCATGAGAGGTGAATCACTGGGGAAGAGGACTATTGAATACGCCCCTATGGGTGTTGGCGTTCCCACTGCTTTTGTGCCTCCACCGTTTCACCCCAATGGATACTATGCTCCTGCCATGGGGACTTACGTTGCGCCACCAAACCCTGCGTCATCTCATCACCATGGAATGCCTAGCACTGAACCGAGTTCTCGCTCCATGTGA


Promoter Sequence:
>Vu_07777::LG1:108841888-108843888(-)
ATAAATTATCAATAGTTAAAATTAATCAGTAAAGTAGTCGTCAATAAGCTTTATTGATGGGTGGAAAAATCCATTAATAACTACATGTGAGTGAATTCGTCTATAAGTACCCGTTAGTAAATATTCGTTGGTAATTATTGATAAATTTAAGTTGGTAGTAACATTTATTATAAAGTACGAAAATTGTGTCTCTTTCTTCCTCCTATTTTCTTTCCTTTATTTTTTCATATCTTCCTCCTCTCATATTCGTCACCGTGTGATTGTCATCAAATTCAACTCCTCCTCATCCTTTTCTTGGTTGTCTTTCTTTTTCCTTTTTCTCTAACTCCAACAACTATCATCATTAAGATTCTTTACCTTTGTGTCATTATTTAGTCACTAACATTCATCCATGTCTTCCACATGCCTTTTCGTCATTAGTGTGTCCTTTATCACGAATGTGTCTCTGCGTTAACTTTCACCCTCTATCGTGTCCCCACTGAGCCACTGTCACGTCACCTTGACCTCCTTTTCTTCTTTTCTCTTCTTCCTTTGTTCTAATTTTCTTTTCATTCGTCTTTCTTTAGTATTAAAAAAACTTACCCAAATTTAAACAAATTTATTGACAAAATAAAATCGTTGCAAATTATAATGATAAGTTATTGACAAAAGCATTTGTCGACCATAAAATTTGTAATTTTTCGACGCTTTATGCTAACAACTTTAACAAATGATAATTGTAATGATAAGTTACCGACTAAAATGTAACGCCCCAGTTTAGGATGTCACTAATCGCATTTAGAATAAAATGTTTCAAAATCCTCTTAACGCATAGTGCCAATTAAAAATTTTGATATTTAAACCTTGCGGAGTTTAAACCAAGTCCTAACTTTAATAAAAATATAATCCAATTACAAACTTTTAAAATTACTAAAATAATTAAGAAATAAATTCAGTCTATTTACATTATTTCTAAAATGCATAACTCAAAAATTTAAAATAAATCAAAGTTGCTCTTCACTCTCGTATTTCTGTCATTCTAAAATATATGTAACATCCCTAGTATATAATTCAGAATCAATTGACAATATCGACATTTTTAATTCTCAATAATTGTGATTATAAATTATTGACAAAAATATTCCTCAATAAATTAATTTGTGAATATTTATAAAACAAATGTCGGTAAATTTATGTTTATTAACAAATTTATCGTCATTAATAATAATTTATTAATCATTAAGAAAATTATAATAATGTGCAGTGTAAATTTATAACTATTAAAAGGGTGTCTATGTTCCATGTGTAGCACTCTTTTCAAGTTGTCATTTTAGATACTTTATTTCTATGCTTTTCCCACACGTTATATTATATATTTCAAATCTAAATAATTCTTCCAATCCAAAAATAAAATTTGAAAATATATTTTATTAAGTGAGACAATATTACCTTCCCAGTCTATCAACTCTTCTTTCCCAGTCTATGTTTCACAAGGAAGCTATTATTAAACCATTGCCCTTACGTTCCATGACTTTCCATAAAACGAACACCGTGTGAAACATTTGTCATCATAACAAATAATAAATTAAAAGAGGAAATATATTTTAATGACAAAGTAATGATAATAATTATGTGAAATTGTTTTTGAAAATGATAAAGTTAAGTAGTCATTAATTTTAATGGTAAATATATTTAAATGTTAATTTTTCGAAACCATCAACAAAACCATTTAACTTTTTATTTAAAGATTACATTAATGCGATACGGGAGGGAAACAGAAACCTACGGGTGTCGGTCTCGTCACTGTCCGCAATCCGAAAGGACCGATCCTTATAACGGATGTCTTACTGTCTGTGACCGGCTATTGCCTATTGCCGCGTTCCTCGTTTGCATCGCCTTCAGTGACACGTCGTTCCAAAATCAAGTTCTATAAATCCCGACACTTGCCAAGTACTCCAACGCTATCTCTCAACCCAACCCTTTCATTTTCATTTTCATTTTTCAATCACTTCACTGTCACC


Gene Sequence:
>Vu_07777(-)
ATGGAAAATGGAGGCTTTCATGGCTACCGCAAGCTCCCCAACACCACCAACTCTGCTGGTAAACCATTAAAATATTTATGTGGATAACACCACCAATATTTTTATTCCCTCTCTCTCTCTCTATTGCTTCATTTTTATCTTTCTTTTCATTTCTAATCCATTTTTGTTTCAATATTTTAACTTCATATATCTCTATAAGTGACTCCATCAGCAGTATACATTAATATACTTCTGAAATATATCTGTATATTTAATATACAGTAGCTGTCTTGGTGATTCTACCATGCATGTAACCTATTTCTCTTTTCAGTCTTCACCTAATTTTCTTGCCAAATCCACTGACCCGTGATGTTTTCAGTGGATTCAGTTCTTTCATTAATTTCCAGCATTTAATTTCCTGATCTCTTTCTTTCTCGCAAAATCTGTGTGTGTGTGTGGGTATACATCATTTTGAGCTTAGAAGCTGCGGAGTTTATTTTATTTTTCTTCATCGGTTTCCCTAATCTGAGTGCGAGCCTGCGTAGTGGTTTGGTTTCAGTAAAGCAACAAGGTGAAATGAAGATGATGACAATAGTGGTTTATGGCTTTACATTTTAGAATGGAACAAGTGGCACGCATGCATGCATGCAATTACTGACTTGCTTGTTACAAGTGGCATTCATGCATTCTGCAGCATCAGATATCAGAATACAAGGATCTGTCTCCATACCACAAGTTTCTTTTACCCTCCTTCCCGGCCATGGTGTGTTGGGCTTACAAATATATCTACATGCATTATATGCAGATTCCAATCCAGCCATTAATGTTTTTGAACAAGCCCTAAGTCCTGTAACTTTTAAAGACCCTTCTTTTTTTTTATGAGAAATGCATTATCATAGTATACATATCATGCATTCTATTGAACTCTAGTTTTCTCTCTAAAATGTGATTTGGATGGTGCTGGTGTGGATGAACTATTTTCATTTTTCTGCTTCAAACAAAAGTTTATCTCCACTTGAGGATTCTCTGAGTGTTGAGATGGCAAAGTTTGAAAGAAAAAACGAGTGTGGACCATCCTGGTGCGTTACATGCAGATGCAGCCAGCCCCTTGTCTTTGAAATGCGTTTCACACTGACGAATGCATGAAAACAAAATAAAGCCGTGAAAAAGAGGACCGTTTATTTGAATCCCTCTGTCCTCTTTAATATAAATCTTATGACTTGAGAGCTGTTTTTTGTCCTTTTCCCCATATTCCTCTTCTCAAGAAAGCACAACTTGAAGCTCTCAAGTGAGTCTCACTCCTTTTACTCCTTTCGGTCATATCAGTTTCACACCTTCGTTAAAACCTGACGTCTATCCCTTAACTTTATCTATCCACCCCCGATTCATTTTCAGGTAGTTTTTTCGGTAACATAAAATCAATGAAAAAAGTACTATGTGTGTGTGTGTATATATATATGTGTGTGTTTGCATACATACATAACCTTAACCTTCACGTATTCACAGGGCTGAAGCTGTCAGTGCCAGACATGAACAACACGAACGTGAGGCAGGCATCTGGAGAGAACAGCAACAACAACCACGCAGCAGATGAGACCAACAACGAATGCACCGTGAGGGAGCAAGACCGTTTTATGCCAATCGCGAATGTGATTAGGATCATGCGAAAGATTCTCCCCCCGCATGCCAAGATCTCTGATGATGCCAAAGAAACAATTCAAGAGTGCGTGTCTGAGTACATCAGCTTTATCACCGGAGAGGCAAATGAGCGTTGCCAGAGGGAACAGCGCAAGACCATAACTGCTGAGGATGTGCTTTGGGCCATGAGCAAGCTTGGATTTGATGATTACATGGAACCACTGACCATGTACCTTCACAGGTATCGTGAGCTCGAGGGTGACCGAACCTCCATGAGAGGTGAATCACTGGGGAAGAGGACTATTGAATACGCCCCTATGGGTGTTGGCGTTCCCACTGCTTTTGTGCCTCCACCGTTTCACCCCAATGGATACTATGCTCCTGCCATGGGGACTTACGTTGCGCCACCAAACCCTGCGTCATCTCATCACCATGGAATGCCTAGCACTGAACCGAGTTCTCGCTCCATGTGA