Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_07742 LG1 108530415 108531224 PREDICTED: zinc-finger homeodomain protein 4
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, long-day photoperiodism, flowering, regulation of transcription, DNA-templated, long-day photoperiodism, flowering, regulation of transcription, DNA-templated, long-day photoperiodism, flowering, long-day photoperiodism, flowering, regulation of transcription, DNA-templated, long-day photoperiodism, flowering
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   protein homodimerization activity, protein binding, protein binding, protein binding, protein binding, protein homodimerization activity, protein binding, protein binding, DNA-binding transcription factor activity, protein binding, transcription cis-regulatory region binding, protein binding, protein binding, transcription cis-regulatory region binding, protein binding
SNP Position Effect Amino acid change
G/C 108530448 synonymous_variant p.Leu259Leu
G/A 108530454 synonymous_variant p.His257His
T/A 108530455 missense_variant p.His257Leu
G/T 108530529 synonymous_variant p.Ser232Ser
T/A 108530645 stop_gained p.Arg194*
C/T 108530652 synonymous_variant p.Val191Val
A/T 108530716 missense_variant p.Met170Lys
G/C 108530784 synonymous_variant p.Pro147Pro
C/G 108530817 synonymous_variant p.Leu136Leu
C/A 108531027 synonymous_variant p.Ala66Ala
C/T 108531039 synonymous_variant p.Gly62Gly

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_07742.1
MELSSQEGEIPIPINSTTYGGGHGNGHGHGLMIHHDPPHHNHIISSTAPTNGTPTMHQEDHGYKKAVRYRECLKNHAAAMGGNATDGCGEFMPSGEEGTIEALNCSACHCHRNFHRKEVEGEPSSCDYHPFNRRRLILGPHKNLLPPEALGYPTGNILPSRSVPPHQMIMPYSIGHLPSESDEQEDGGGMVQPRPSQLVKKRFRTKFTQEQKEKMLNFAERVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNPPTAAA*


CDS Sequence:
>Vu_07742.1
ATGGAACTTTCGAGTCAAGAAGGAGAAATCCCAATCCCAATAAACAGCACTACTTATGGTGGGGGACACGGTAATGGACACGGTCATGGTCTCATGATTCACCATGACCCTCCACACCACAACCACATTATCTCCTCCACGGCTCCTACGAACGGCACACCCACTATGCATCAGGAGGATCATGGGTACAAGAAAGCGGTGAGATACAGAGAATGCCTGAAGAACCATGCAGCGGCCATGGGAGGGAATGCCACTGATGGATGCGGCGAGTTCATGCCGAGTGGAGAAGAGGGCACCATAGAGGCACTGAACTGCTCGGCCTGCCATTGTCACAGAAACTTCCACAGAAAGGAAGTGGAGGGTGAGCCGTCTTCGTGTGACTACCACCCCTTCAACAGAAGAAGACTGATTCTGGGCCCTCACAAGAACCTCCTCCCTCCCGAGGCTCTTGGCTACCCTACGGGTAACATCCTTCCTTCTAGAAGTGTCCCACCACACCAGATGATAATGCCCTACAGCATTGGTCACCTCCCTTCAGAGTCTGATGAACAAGAAGACGGTGGAGGAATGGTGCAGCCTAGACCCTCCCAGCTAGTGAAGAAAAGGTTCAGGACAAAGTTCACCCAGGAGCAGAAGGAGAAAATGCTCAACTTTGCTGAGAGGGTTGGCTGGAAAATCCAGAAACAAGAAGAGTCCGTGGTGCAACAGTTCTGCCAAGAGATTGGGGTCAAGCGAAGAGTGCTCAAGGTTTGGATGCACAACAATAAGCACAATCTCGCCAAAAAGAATCCTCCTACTGCAGCAGCTTAA


Promoter Sequence:
>Vu_07742::LG1:108531224-108533224(-)
ACAGCTTTACAGACTAACCCTGACGTACCACTGTCAACCTTTTTCATCACCTCTTTCTTCTTTCTTCTTTAATCCCACTTTATTATTCTCTTTCTACTTCTGCTAAAACCCTCTCTAATACAACAATTTACCATTGTTTCTCTCTTTCTCTCTCACATGTGAAATATCTGAATGGAATTCAATGCTCTTTCTATTCCAAAGGAACATCATTGACATCTTGAGCCAACTATTTATTGACACAACACCACAACAAGCAAACCAAACCAAATAATAATAATAATATTCATTTCTTATTTACATCTTCCACAGATAGATTAATGGAGTAATAAAACCTAATTTATCACCTCAGCTCACCCTACCACTGCATTTAACTTTTGCATGCCCTCGTCACCCACTTTAATTATGACCAAAATTTCTCCTACCCAAAATGTGTTTTGGCTATTAATTCATCTCTTAAGCATCAAATAACAACTGCATTTCTGATGTTTTCCTGTAAATGCTGTTTGTATGTGGCCAGTAATGAGTACACAGACATGGGAAATTACTATAAGATAATTAATACGCTCATCCGTTGTCTGCTTTTGTAATTAAGAAAAAAATAATAGTATTAAGTGAGGCACACGCACGCACGCAGAGTTATTTATAGTTTTTAATTATTTTCTCCTCTACTCGGCTAACACATTTAAGTTTAGTTTGTAGTAAAACGTTAACCCCACGTGAGAAGGGAGATAGGTAGTTTGAATGGAGACATTTGTATTTGAACAGCATTGAATTCTTAAAAAAGGGGAAGCAAATAAGCCTGTGTGCATCTTCACCTGAAATATACTAGTCTTTAGAGTTATATGCTGTTTTGAAGTTAATGACTCCCTAACGAACTTGATGGAAATATTTATGGTGATGTCTAACTTTGTCCCCCATTGGATTATGAATGGTATTTAGTTGAGTGGGTTTGCTTAATGTTGGAAGAGAGCATTTCTGATGCATAGAGAAGGAAAGTTTAAGTTATTTACTTTGAAAAAACGTTTCTTTCAGTTAATTCAATTTGAGAAAGGTTCTGTGTCTGTCTCTCTCTCTGCCATCTTTTGTCCTCACCACTATCTGACACACTGCTCCCCTCTATATGGCGTAAACTCGATAGCTGATAGTGCAAGCAAAGCAAACCAAAGCAAGCACCCCACTTTTTTTTTTTTTTTTTGGAGTCTCTAATCTGAATCTCCCTCTCCAAATACTCAACTCTGCATTCCTCTCTGTCTGTTAAAATCTGCTTTTTTTGACCTCTTCTTTTTGTCCTCCCACACCACCTCTATAAGCACCTCTTGTTAAGTGTTTCACTGCCAAAACTCTCCATCCTTTCCTTCTCTCTTTCTCTCTCTTCCTTCTTCACCTCTTGCTTACTTCTATTACTCTAATTACTGTGATTCCCCTCTAAACCAAATCATCCTTTTCTTTCCTTCTAACCAACCATGTCTGCAACACAAGCTGTTTGATCCATGTCAGTTTCCTCTTCCTCTTCTCCAATTGACTTTGTAGCAGGCTGAAATTATAAAAAAAAAAGAAAAAAGAAGAAAGCTACAGGGTTTGTTTGTAGCTGTCTTCATTGATTATCTTCTGGCTGAGATATAGAGACGGTTAGTTGTCTGTAGTCACACTCTCTTTCTCTCTCTGTGTGTCTCCTTTTCAAGAGATAGAAATTAGAAAATACCCAGAGTGGGAAAGTGTCTTGTTTGCTTAAAAAGTTGTCTTCTCATGACCATATCCTGTGTGCCCTACTTCTGAGTCTGTGCTTTCTTACTTTCTCTTCTTAATTCACCTGAAGATAATGAGGTCGGTGGTGGTAGTGCCATAGTGCTGCTACTCAACTCAATTGCTTCCAACACCACTCCATAATTTTCGTTTCTTCCTAGCCAGCTTTTGAAAGATTAGGATTTCTGAAACTTAGAATTGCAATCATTTTAGCACTACACTATACCCTAAAGAAGCAAACAGGTAGCTAGGAGGGA


Gene Sequence:
>Vu_07742(-)
ATGGAACTTTCGAGTCAAGAAGGAGAAATCCCAATCCCAATAAACAGCACTACTTATGGTGGGGGACACGGTAATGGACACGGTCATGGTCTCATGATTCACCATGACCCTCCACACCACAACCACATTATCTCCTCCACGGCTCCTACGAACGGCACACCCACTATGCATCAGGAGGATCATGGGTACAAGAAAGCGGTGAGATACAGAGAATGCCTGAAGAACCATGCAGCGGCCATGGGAGGGAATGCCACTGATGGATGCGGCGAGTTCATGCCGAGTGGAGAAGAGGGCACCATAGAGGCACTGAACTGCTCGGCCTGCCATTGTCACAGAAACTTCCACAGAAAGGAAGTGGAGGGTGAGCCGTCTTCGTGTGACTACCACCCCTTCAACAGAAGAAGACTGATTCTGGGCCCTCACAAGAACCTCCTCCCTCCCGAGGCTCTTGGCTACCCTACGGGTAACATCCTTCCTTCTAGAAGTGTCCCACCACACCAGATGATAATGCCCTACAGCATTGGTCACCTCCCTTCAGAGTCTGATGAACAAGAAGACGGTGGAGGAATGGTGCAGCCTAGACCCTCCCAGCTAGTGAAGAAAAGGTTCAGGACAAAGTTCACCCAGGAGCAGAAGGAGAAAATGCTCAACTTTGCTGAGAGGGTTGGCTGGAAAATCCAGAAACAAGAAGAGTCCGTGGTGCAACAGTTCTGCCAAGAGATTGGGGTCAAGCGAAGAGTGCTCAAGGTTTGGATGCACAACAATAAGCACAATCTCGCCAAAAAGAATCCTCCTACTGCAGCAGCTTAA