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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_07659 LG1 107853628 107854401 hypothetical protein
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/C 107853635 missense_variant p.Asp197Gly
G/C 107853860 missense_variant p.Ser122Cys
A/G 107854051 downstream_gene_variant
A/T 107854066 downstream_gene_variant
T/C 107854096 downstream_gene_variant
G/C 107854097 downstream_gene_variant
C/A 107854117 downstream_gene_variant
C/G 107854274 missense_variant p.Ser43Thr
A/G 107854327 synonymous_variant p.Ala25Ala
A/G 107854350 missense_variant p.Ser18Pro

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_07659.1
MPPFSQIPPSSSSFLHPSTIAEATANTTSRKRVKRPSHSNCGSVNMERERRSKMTQMFTQLQTSVPGLLPQATREVIINETIGYIKELEKKKQRLEELKKLKETMKGVEGSTVECGNNNRNSSLVVTVSDNVAFFGIQWMPRPGLVTQILKVFCNHQAEILAANVTVNNGKLILAITALVQNNGNCVVEKIKREIMDL*


CDS Sequence:
>Vu_07659.1
ATGCCACCATTCTCTCAAATCCCACCTTCTTCTTCTTCTTTTCTTCACCCTTCGACCATTGCCGAAGCAACTGCTAACACCACCAGCAGAAAGCGTGTTAAGAGACCGAGTCACTCCAATTGTGGGAGCGTTAACATGGAACGTGAAAGAAGGTCCAAGATGACTCAAATGTTCACTCAGCTTCAAACCTCTGTCCCTGGTCTCTTACCTCAGGCTACAAGAGAAGTGATAATAAACGAGACAATTGGGTACATAAAGGAGCTTGAGAAGAAGAAGCAGAGATTGGAGGAGTTGAAGAAGTTGAAGGAGACCATGAAAGGTGTGGAAGGATCAACGGTTGAATGTGGTAACAATAATAGAAATTCTTCACTCGTGGTTACTGTTTCTGATAATGTTGCATTCTTTGGTATTCAATGGATGCCTCGACCAGGTTTGGTGACACAAATTTTGAAGGTGTTTTGCAATCACCAAGCAGAGATTTTGGCTGCAAATGTGACTGTTAATAATGGGAAATTGATATTGGCAATCACAGCTTTGGTGCAAAACAATGGAAACTGTGTGGTTGAAAAGATTAAAAGAGAAATTATGGATTTGTAG


Promoter Sequence:
>Vu_07659::LG1:107854401-107856401(-)
TTAATTAAAAAATTACATTTTTTTTAATTCAAATTTAAACAAATTTTAATCTAAAATAATATTAAATTTAAAAAACAATTCAAAATAAAATAAAATAACACAATTGAAATAGAATCCAAAATCATCTTGAACTTCAAATTTAATTCAAAAATAAAAACAAAATATAAAATTAAATGGGTTAACTAACCTAACTTACCACAAGTTAAATCCAAATTTTTAATAGGTTAAATTTAAAATTAACTTGTATTAATTTTTTTTTCAATCTAAACTTGTGATGAACTGAATTAATTTAATTCACAGATTTTAATCTATTTTCACAGCACTAGAGTTTATTAATAAATAGTTATTATACTTTTAAAAGTCATTTATGATATACTGGACATTTTCCCATGTGCCATTTTAATGCTGCCATTTATGGTTGCAGTTGTAGTACTAAGGTGGCCGATATCATATTTTGAAAAATGAATCATAGTGGGGCTACTTTTTCTTTAATGTCACCGCTTCTAGGTGGAATTAGCATTCAATTTAGTTTAACAAAAATATAGGCTAAACATTCTTTTAAATCAGCTAAACGAAATATGAAAAAGAACACCATTATGCATAAAATAATTTCCAATATTTATATGTATTAAAGCATATTTTTAAATAATAAAAGTGAAATGGAACTCACTTAAATGATAAAATAATAAATAAAATTTATCTCTAAAAATAGAATTATTTATGGCTTTTTTATATTTATATATTAAAAAGTGTAAAACTTTGGTGTTTAACGTGATTTTCAAACATCTTAATTAATTTACAACATGTCCTAGGTATTTTCTGGTGACCAATGCAATAGCATGCACGTATGGAGCTTTGACTCTGGTTGTTGCCGTAGTGAACAGAGGTAAAAGTAAAGGCTTGTGGACAGTGATTGCTGTTCTAGACGCATTCGTGGTGGCTTTGCTATTTTCCGGCAATGGTGCCGCGGCGGCGGTGGGTGTCCTTGGCTACAAAGGAAACTCCCATGTGAATTGGAAAAAAGTGTGCAATGTGTTTGATAAATTCTGTGGTCAAATGGCTGTTTCAATCGGTGTGTCGTTGATCGGATCGTTGGCATTTCTCTTGCTTGTGGTTATTCCTGTGGTGAGACTTCATCGAAGAACTTTGTCAATCAACAATTAAACCAAGTCTTATTCATTATCCTAGTTCATGTTTATCAGAATATATTAAGTTATTATTGTAATATGTGTTGAATAATAATGTACGAGACACTAGTTTATCGAACAAATGAATAATAAATCATGACTGTTCTTCTCTGTTTTCTTGACTCCCACTCCAAAACAACTTCTCTTTTCTCTTTTATTGTTCATCACTTTGTGGGGTCCAACCTCTGCACACCAATAAGTCTGTTATTTCAGTCTCTCTCTGCTGCTTTTTTCCACTCATACGGTTACTCTGCATGATCATGATACAGAAAGGTGTCACGATCACACATGCCCGCGGGAATCTAATCAATTACCGCTACCTATTTTTCTTCCAAATGTTACCATTTCTGTTACCAACTACACAAATTCCAACACTTTTACAATCATAGGATGCCACCGTCAATCCCCTTTCCTCAATTAGTTTACTTCATTTCACCAAAATTCCTTCTAGAGTGGCCATAGATAAAGACAATAAACAATATAATAGAAATTAGATAAGGCTGAAAATACACAAAATCATAGTGCATATATTATATATCTTTCAAGATGAAGCCTTTTCTTTTTCTGCAAGCAGGTACGTACTAGCAGATCGATTCAAATCAAACCAATGATTGATCTTAACCACCCCAGCTTTTTCTTTTTCTCAATTTCACTCGAGAAATACAATACGATACGATACAAAACAAAACAGAACAAATCAAAACTGCTTGGTATATAGCTAGAAGAGAGATAATTAAATAAAGTATATGATGTATATTATTGACCAAGATGCAAGGTCACACTACGAAAAAGGAAACCGAAACTCACTCTACC


Gene Sequence:
>Vu_07659(-)
ATGCCACCATTCTCTCAAATCCCACCTTCTTCTTCTTCTTTTCTTCACCCTTCGACCATTGCCGAAGCAACTGCTAACACCACCAGCAGAAAGCGTGTTAAGAGACCGAGTCACTCCAATTGTGGGAGCGTTAACATGGAACGTGAAAGAAGGTCCAAGATGACTCAAATGTTCACTCAGCTTCAAACCTCTGTCCCTGGTCTCTTACCTCAGGTTCATCAATCATCATCCAAAATTCCATGTCTTGTCGATTTCATGGTTTTTGGGGGTTTTGGTAAAATGGGGTTTCTACATTATGTGTCCACATTTCATGTTTTTTGTTCCACCCGTTTATTTTAATGTCAGTGAGTTTTTTGAATGACCCTTTTCTTTGTTATGCGGGAATCATAGGCTACAAGAGAAGTGATAATAAACGAGACAATTGGGTACATAAAGGAGCTTGAGAAGAAGAAGCAGAGATTGGAGGAGTTGAAGAAGTTGAAGGAGACCATGAAAGGTGTGGAAGGATCAACGGTTGAATGTGGTAACAATAATAGAAATTCTTCACTCGTGGTTACTGTTTCTGATAATGTTGCATTCTTTGGTATTCAATGGATGCCTCGACCAGGTTTGGTGACACAAATTTTGAAGGTGTTTTGCAATCACCAAGCAGAGATTTTGGCTGCAAATGTGACTGTTAATAATGGGAAATTGATATTGGCAATCACAGCTTTGGTGCAAAACAATGGAAACTGTGTGGTTGAAAAGATTAAAAGAGAAATTATGGATTTGTAG

NIPGR © 2020

This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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