People Important Links Contact Us
Chickpea portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Menu

Genetic Resources

Genomic Resources

Agronomic Practice

Publications

Nutrition

Social Resources
  • Maps
  • Gene Families
  • Gene Search
  • MARKERs  
    • SSRs
    • SNPs
  • JBrowse
  • Download

Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_07595 LG1 107267228 107268086 PREDICTED: ethylene-responsive transcription factor ERF071
Map

Annotations  
category   relationship type   keyword
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
G/T 107267256 3_prime_UTR_variant
A/T 107267527 missense_variant p.Leu157His
C/T 107267808 synonymous_variant p.Ala63Ala
T/A 107267916 downstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_07595.1
MCGGSIISDFIEVDIKNVPESTTRRLFSQLHTFNATSSSTLNKVEEPCQKLKNSRVVAEKAGARVRKNAYRGIRRRPWGKWAAEIRDPRKGVRVWLGTFATAEEAARAYDAAAVRIRGDKAKLNFPDHHRHPSNINNNPCLSPELTQSCYQPSLNNLDHDPQLAQQISNLESFLGLEHEQLPMQPLPLPEWDPLHDVVLSNHHLF*


CDS Sequence:
>Vu_07595.1
ATGTGCGGTGGTTCTATCATCTCTGATTTCATAGAAGTCGATATCAAGAATGTTCCAGAATCCACCACCCGTCGCCTCTTCTCTCAGCTCCACACTTTCAACGCCACCTCTTCTTCCACACTCAACAAAGTGGAGGAGCCATGTCAGAAGCTCAAGAACAGCAGAGTAGTTGCTGAGAAGGCTGGTGCGCGAGTACGGAAGAATGCCTACAGAGGAATCAGGCGAAGGCCGTGGGGCAAGTGGGCTGCCGAAATAAGGGACCCACGCAAGGGCGTTCGCGTGTGGCTCGGCACCTTCGCCACCGCGGAAGAAGCCGCACGCGCCTACGACGCCGCCGCCGTACGCATCCGCGGAGACAAGGCCAAGCTCAACTTCCCCGACCATCACCGCCACCCATCCAACATCAACAACAACCCATGCCTCAGCCCCGAGTTGACTCAGTCGTGTTATCAACCTAGTCTTAATAACCTCGACCACGACCCTCAACTCGCGCAACAGATTTCCAACCTGGAATCGTTTCTTGGTTTGGAGCACGAACAGCTTCCGATGCAGCCGCTGCCACTTCCTGAGTGGGACCCGCTCCACGACGTCGTTTTGTCCAACCACCACCTCTTCTGA


Promoter Sequence:
>Vu_07595::LG1:107268086-107270086(-)
TTCTGTAATTGAATTTCCACTCTTTTAACTTGATTTTTTAATTCAAAATTTAAAATAATAGAATTCAACCACGTTTTTAATGACACACACTGTCAGCATGCCAGGTGACACAATACTTAACGCCTTCTAATCAATGATGGAAAGACCCTATTTAATTCAATTTTACAAAAATAAGGACTCAATTAAGACGTCAAAAAGAAAGGGTCCTATTTGAGATTCTGAACGAAAATAGAGACCAATTGAGACATTAAACCTTAGTTTATCTAGAAAAAAAAAGTTATATAATTTCTCCTATATACAGTCTTTCAAATTTCTTATATTTTAATTTAGAAGTAATTAATTTTAATTTATAGAGAATATGTTTTTTCTCTTTAAGCTTTTGTTAAAAAGTTTAACAAGGGTTTAAACGTAGAATAATGGTGAGGTGGTATATTTATATTCATTTGACATAAAAATAAATAAAAAAATGTATTTTTAACAAAAAAATAAGAGTAAAAAGTAAAGAAAAATAATATTAAATGAATGAAAAAAATTTGCTGTCAAAATATTATTTTTATTAAACGTGACATGTCTAAATTACAATAAAAAAGTGTCTAATTTTTCTAAGTAACTATTATTTCGATTGATGTCTTAATCTCACAATTATTGCCCCCACACATTTTCATCTCTCATAAGGAAATTGCATCCCACAGATATGGTCGTAACTCAAATGCATATCTACGGAAGTCAAAATAGGCAGACTCTAAATGGTGCGTTGAAAAGATAATGTATTGTAGTAATTACATTAAGTGTGTCTAATTATAAAAACTTTTTAGGAGATTGAAATTTGGAGTAAATAAGACTTTGATTTTAAAACTTATAAAATATATAGTTTTGGTTTTTAAAAATTTAAAAATATAAGTTTATTTATTACTTAACCTCTAAAAATAGTTTTTAAAAAATATTTTAATTTCTCTACTTTTAGTATTTAAGAACTAAAAGTTACTCTTTTTTCAACTTTAAATGATTAATTTTTTATTAAATTTGAGAAAGACCATAACTAGATTCATCTACTGTATTTTAGGGAATAAAAATAGTTAGATCACTAAAAATTACAAAAATTTACTCGTTATCTATAATTAATAATTATCATTTTGAAATTTATTGAGTGAAATGGATCTTCATATGAGTTAAATTCCATGGAGTGGATTATATTTAAATGAAATATACGGCCTATTTACATATGAAATAATGACAAAAAATATAGAAAAGATGAAAGTGGATAAGAAATAAAATAGAGAATGTATTGTTTGGCTAGCCAGACAGAAAAAAACGAGCAAACGAAGTTCACTTCACTTATTTAAATTAGTTAAAAAAAGGCAAGTAAATAAATAAATTAATTGTAAAAGACTTACTAACTTATACCTAATTCACGATATGAGTGTTTATTTTAACTATATTTTTTTTCTTTGCATAAAGCTGTTCTATTTTACATATAATATTTACATTTTAAAATTTTAAAACAAAAAAATAAAAATACTATATACATCCCGTCACTTCATCGAAAAATGTTTTTATGTGTGAAACTTATTATTTTAAGGTTTAAAGTTAAAAATAGTGTGAATTTTGTATTTAAGTTATTTTTTTGATGTGAAAGGAAAAATCATGATACATATAAAAAACAACTAGAGGATTATTATCTAAAATAGGAAATCGATCATGGAGGTTTACATATAGCAATGTTTGAATAATATTGGAGATCTGAGTCACCTTAAGAATAAGGTGAAATTAGAATGGAGTGCAATTTGTTGTGAAACTTTTTCCGAAGTTAAGTTTGGTACGTAAAAATTACAAAATCAAAAGAATATCTAATTTTGAAAAAGAAGTGTTTTAAAAGAGTCTCTGGGTAGCGTAAGTGGAAGAAAAACCCGATTTAAACTTTTATGTCCACTTGCCTGTAATGTTACTGTTTTCTTCTTTATCCCACTTCTATAAATTCATGTTCCTTCTCCTCTCATTCT


Gene Sequence:
>Vu_07595(-)
ATTCATTTCTCTCAGATCAAAATGTGCGGTGGTTCTATCATCTCTGATTTCATAGAAGTCGATATCAAGAATGTTCCAGAATCCACCACCCGTCGCCTCTTCTCTCAGCTCCACACTTTCAACGCCACCTCTTCTTCCACACTCAACAAAGGTAACACCTTCTTCTTCTCACTAATTATATTTTTTGGCATTATCATGATTTTTGTTGACTTTTATGCAGTGGAGGAGCCATGTCAGAAGCTCAAGAACAGCAGAGTAGTTGCTGAGAAGGCTGGTGCGCGAGTACGGAAGAATGCCTACAGAGGAATCAGGCGAAGGCCGTGGGGCAAGTGGGCTGCCGAAATAAGGGACCCACGCAAGGGCGTTCGCGTGTGGCTCGGCACCTTCGCCACCGCGGAAGAAGCCGCACGCGCCTACGACGCCGCCGCCGTACGCATCCGCGGAGACAAGGCCAAGCTCAACTTCCCCGACCATCACCGCCACCCATCCAACATCAACAACAACCCATGCCTCAGCCCCGAGTTGACTCAGTCGTGTTATCAACCTAGTCTTAATAACCTCGACCACGACCCTCAACTCGCGCAACAGATTTCCAACCTGGAATCGTTTCTTGGTTTGGAGCACGAACAGCTTCCGATGCAGCCGCTGCCACTTCCTGAGTGGGACCCGCTCCACGACGTCGTTTTGTCCAACCACCACCTCTTCTGAAACCTTGTTGCTGCTGCCGTGTTTCAAATTAGCCTCTGTAAAATTTAATCTTACATGCTTTTCTTTGTGTTCCTGAATTCCTGCTTCTGTTTTACTTTTATGTATAAAACTTTTCGTATCATCGTATAAGTATTTTATTTTCTTCCCTTCC

NIPGR © 2020

This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

Visits: 1322335