Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_07573 LG1 107093094 107094071 GATA transcription factor 16
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, response to jasmonic acid, small molecule metabolic process, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, response to wounding, response to jasmonic acid, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus
Molecular Function   enables   DNA-binding transcription factor activity, zinc ion binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
A/G 107093428 intron_variant
G/A 107093700 synonymous_variant p.Arg65Arg

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_07573.1
MVDPAGKGSEGEDSNPNAPSSGNSPSSNNEQKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGISKGNNEDGRKGKKSGGAGAAAIGGGALGREVLLHRSHWKKLGEEEKAAVLLMSLSYGSVYA*


CDS Sequence:
>Vu_07573.1
ATGGTGGATCCAGCTGGAAAAGGATCGGAGGGTGAGGACTCAAACCCTAACGCGCCTTCCTCGGGGAACAGTCCAAGCAGCAACAATGAGCAGAAGAAAACCTGCGCCGATTGCGGCACCACCAAGACTCCACTCTGGAGGGGAGGTCCGGCAGGGCCTAAGTCTCTGTGCAACGCCTGCGGGATCAGAAGCAGGAAGAAGAAGAGAGCGATTCTGGGGATAAGCAAGGGGAACAACGAGGATGGGAGAAAGGGGAAGAAGAGTGGCGGCGCCGGGGCCGCCGCTATCGGTGGCGGCGCGTTGGGGAGGGAGGTATTGTTGCATCGATCACATTGGAAGAAGCTCGGGGAGGAAGAAAAAGCTGCGGTGCTTTTGATGTCGCTGTCTTATGGATCCGTTTATGCCTGA


Promoter Sequence:
>Vu_07573::LG1:107091094-107093094(+)
TGGGAAAATAGTTTCCACAAAAATATTTTTTAAAACTCTTCTCACTATTACCAATTACTCATTTCTAGTTTTTTAAGATCAAAAAATGTTTTATTCCACACCACAATGTTCCAAAGGTAAATAACCCTAATGTTTTATTTGAATTAAAGGAAGGCTAAAAGGAAAAGAGGATGAAAAAGTAAGATTGTTTACATTGATGAAAAGAATATAATAATTTTTGTTTAAATTAACATGTTAAACAAATTTCTAAAATTAATTTGATGCAAAAAAAATCTTTTTAAAATAAGAATTAGAATTAAAACGAAATTTAAACTAAAATATTTTTTTTAATTTTTAATAAATAAAAATTTATTATTTAAAATAATAACATATCAAACTAAATTATTCAATAAAACATGAATATTTAAATTAATTAATTTTATTGAATTTAATATCGATAATTTTATTCACTATTATTTTTATTTATTTATTATTATTGCAATATAAAACAAAAAAAAACAAAAAAAAAACGCCCACGATTATGAATTTATCCATAATCAATTATTAAGGATGTCTTTTATTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTCTTTCTTTCTCTTAATCTTAGAAGCCACATGACTTTCCACTTTTTCTAGTTTTAGTTTTGCATGGATTTTTCTATCTCCTCCTCTCCATATCTTTTGGAATTTGAAATCAGTTGAAATAAAACACTACCACTCACTCAGATACTTTTCTTTTTCCATCTTCGAAAATAGTAATATGACGTACTAAAATAATTATGTCATGTTTGTTTGTTTGTTTGGACATTGGAAGAGTGTAACCCAAGATAATGACTAGGTACTTAAATAGCCTGTATGTTATTCTAATTATCTATTTTTTTTATTTCCAACTTTATGCCAATAAACAAAAATAACATAAAAAGAAAAAGTGATCCATGAAACTCCAACACAGTAAAAAAGTGAATATTAACCAAGGTCATTAAAACCGAATAAACTTGTAAGTTTTATGTAATGTATTATTACATGTTTGACCATGTTTCAGTTACAATCGAAATAGTCAACAAGAACATAAGTTGTTTTGGGTTGAATCATGGGTATCAAGACAAGGGAAAAGATTCTTCCAGTAGTCTACCTAACTTTTTTAATTTTATTTGTGTGATTCTGTCACTGTAAATATTGGAATAAAATTCATTAAAACTAAAAAAGAAATTAAAAGCAGAGTAAGATGCAAATTTAAATGATTACTAAAGAACAAATAAATAAATATACGAAAACAGCACACTGAACACGTAAACAAGTTCTTAATCATGTCTCACCATTCATAATCTTGTTTGTCATTAAAGTGAACACCTTTATAAGTTAATCAAATGGAAATTTTAAAGAGACGGACATGTTTACCCTATGACTAGGCAATGAGATGTTATTTCCAGAAGAAATTACCTTGAAGAATTTATTGTTTTCATAAATACAAAGTATGAGAGAATCAACGCAAGACAAAAAACCTATATACATATATCCATGGTTTGATTTCAATATTAAGAAAGAAACAACTTTGAGTGAAGAAGCTCAAGAGTGGTCAAAAAACAATAGTGGTTTGGTTTTTTGAAATGTTGTTATGAATGTTGGTCGAACAGTTATTTTAGATGGATTGATCAGATTACTAACGAACATTGGGGTTTCGAATTCTACGAGTATTCTGGGAGTGTGAATTATTAATAATGTTTTAAGAATGGAAGAGAAGTGAAAGAGAAGAATTTGGCAGAATGATGATGATTAAGAAATAGGAATTAATGAAAGGTTAGAGGGAAAGGCATGGCGCGTTTTTGATGATTTTTGTGAGTTTTGGCGGGTGAAGAGAAAAGAAGAGGAGGGAAGGGGCATTCTGGACATTTTCTATGGGATCGGTTAGGGTTTTGGCATCCCATTTATAAAGCTCTGGTGTTTTAAGATTAGATC


Gene Sequence:
>Vu_07573(+)
CTGCTGCGGCTGGTGCGCGTGTGTCTGCGTTGCGAGCGTCGTCGTTTCGATTCGATTCCCTCTCTCCCTCTCTTTTTCCCTCTCTCTTTCTCTCTCTCTCTCTCCCTCACTCTCTCTCTCTCAGCACACTCACTCTCTCACACTCACTCTGCTTCCTCTGCTTCCTCTGCATGCTTCTTCCCTCGCTCTGATTCCGCCGAAACGAGTGGTGGTCTCGGAAATCAATCGAATCTCAGATCTCGGTGATCAGAATGGTGGATCCAGCTGGAAAAGTGAGTGTTAACTATTGTATAGTGGTTTCAGTGTTTCTGATTAGGGTTTGTTTGATTAATGGAGGTTGTTGTGCAGGGATCGGAGGGTGAGGACTCAAACCCTAACGCGCCTTCCTCGGGGAACAGTCCAAGCAGCAACAATGAGCAGAAGAAAACCTGCGCCGATTGCGGCACCACCAAGACTCCACTCTGGAGGGGAGGTCCGGCAGGGCCTAAGGTCAGTACTCTCTCCATTTCCCAGATCGCGCCACCTGGACTAACATCAACCCTTGATCTCACTCTCTTATCGTTTATTTTTTCAGTCTCTGTGCAACGCCTGCGGGATCAGAAGCAGGAAGAAGAAGAGAGCGATTCTGGGGATAAGCAAGGGGAACAACGAGGATGGGAGAAAGGGGAAGAAGAGTGGCGGCGCCGGGGCCGCCGCTATCGGTGGCGGCGCGTTGGGGAGGGAGGTATTGTTGCATCGATCACATTGGAAGAAGCTCGGGGAGGAAGAAAAAGCTGCGGTGCTTTTGATGTCGCTGTCTTATGGATCCGTTTATGCCTGAACCAAATTTAATCATTTTATTGATGTAGAAGATGCAGAAGAAGAATTATTAAGGAGAAATCTAGATTTTGTTTTAGGATGTCCCCTAACCTTTTCCGAATTGTATATGTTTTAGTTTTCTTCTCTATTGAGTGATTGAGTGTGTGGGTTGGTTGTCAA