Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_07509	LG1	106584389	106586209	PREDICTED: probable WRKY transcription factor 23	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, response to auxin, regulation of transcription, DNA-templated, protein localization involved in auxin polar transport, response to nematode, response to auxin, response to nematode, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	located in	nucleus
Molecular Function	enables	DNA-binding transcription factor activity, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
T/G	106584556	stop_lost	p.Ter302Tyrext*?
G/A	106584620	missense_variant	p.Pro281Leu
G/C	106584645	missense_variant	p.Leu273Val
A/G	106585363	intron_variant
A/T	106585374	intron_variant
T/A	106585594	intron_variant
C/A	106585752	missense_variant	p.Gly153Val
G/A	106585755	missense_variant	p.Thr152Ile
G/T	106585900	missense_variant	p.Gln104Lys
G/T	106585905	missense_variant	p.Pro102His

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_07509.1

MEEKREKEANSKSSSTMANSVAFSDEIPNMTMTMSFPFSPAFSTIFDIMPPLPPPPSSSLPHDPKASNFPFMDLLSVPDYIPSLFDWPQNTAVTSPPPPPAPTQITHALPSPASSNVPDGGSEVLNTPPSPNYSSISSSSNEAAAAAANKATGNEDEPEEDETATDAAGKGEDQDQDKSKNQPKPKKKHQKKPREPRFAFKTKSEVDHLDDGYRWRKYGQKAVKNSPHPSLGFLHSEPSAFGPTSGLFMLQQQQHQQFRHDQAQAQAQAQAQAQVAMLYNSTTTSTSSSSSPLNVVNSATCINDYANTSSLSGFLQSQENLRAFALSRVGGPQGFFNGLLQDMLPTQMMNEERGDRV*

CDS Sequence:
>Vu_07509.1

Promoter Sequence:
>Vu_07509::LG1:106586209-106588209(-)

AATAAATTTCTTTAACATTGTTTCTTAAAAACATTTCTTTTACTTTAATTTTAAAGTTATTTCATTCAAGTCTATAATAACACAGAAATTCTCTTCACATTTTCACATTTAAAGCGGCATTTTATTTGTTATAATTTTTCCATACAATGTTAGGGTTCTCACCTCAAAATTAAATACTTTGAAAATAAATGAAAATGTTTTCATGAAATGAACTTATTTTTTGGAGGATCCAACATCTTATGGTTGTAGACGAAGAAGGTAACATAGTAGAATTTATAATCCAAAACTTGTAATAAAATTAAATTTTCAAACGCCTTTTAGTTGTATTAATCACCAATATTAGTAGAAAACAACTCAACTATCCATTGTCTATCCTATTTATTCCTTAGTAAGTTCATATTAACCGTCCATTACAAAATATGAAAAATAAAAATAAAAATGATTGAAGTAGATAAAATTTATCTATTTTATTTTATTGATGGCTAGTGATTCGTCCATTATTTTTAAAAATTCAACTTATACTCCTATTTATAATAAATAAAAATGAATTCAACATTTTTTCATAACGTCTTTATCAAATACGTTTTTTCAAGAAATATATTTGTAAAATATGAGTTAAAAAACTTAATTTTGTTAACTTGTAAAAAATATATTTTAACTTCTAAAATGATCTGTTTCATAGATGAATATATTGAATGTCCATTAATGAAAAAAAATTAATGGTTGATTTTTTATCAATAGATTATTAAAGATTGAAAGTTTCAATAATTCAAAATCAATCAATAATTTATTTTCATCTGAATCATTTGATGTAAAATAAAATATATCCATCAGTTTGCAATAAATATGCAGACTTAAATTAGAAATGGTTTTCATTCAATGATTATCTAATTATAACTATTCTTTGTACAATTCATTGTGTGATGAAAATAGTTAAGGAGAGCTATCAATACAATATTTAGAAAGTTTTCAAAAATATATTTATTTTTCTCCTAACACAGTTTTCCTTAAATCCGTTAAATCAAGAGTGACTGACTTTGAATTTTTTACACAATGAAAATAGAACATTATATTAACAAGTTGCATAACCATAGTTTACAATATTATTGTAGTTGTTCATACTAAATAAAATGATTTTGAAAAACAAAAAATGTAGATAATATTTTTTTAAAGAAATATTAAAAGAGAATAAAAAATAAAAAAGGGAAATGAAAGAGGACAGCACCATCACATGCTAACATCAGACCCTAATCTCCTTTTACTTACATCCCACGTGTACACTCCCCCGTTCACACTAATTCCGGTTGCCAGTCAAATATACGCGTTCACTGGGACCCACCGCTGCTCCTCCTTCGCAGTAAATGCTATCGCAATCCACTTGTGAGAACGAAAACCGCCACGTGTCGGTCACTCCCTAGGTGGGAAACCTCTCCCAGCCCAGCCAACCTGTTCTCCAAATTCCCCACCCCATCCAAACCCAACCAAATCAAACTCCTTTCACACACCCAATTTTTTATATATATATATATATATATATATATATATTTTATTTAAACAAAACCCCCTTATTAATTATTAATCTTTATTGAAAATTGAAATATCAGATAATTGAATAATTTGAGATTAATTCTTTAATGATACATCAGTTTCTTTCCTTTCATATATATAAATCTGATGATGAAACAAAACTCCTGGTCAAAAGCTTACAAGACATGGTCTGTAACTAAACGTTTTAGCTTTAAAAAAATAATATTTTTGAATTAAGTATTAATTGTGGTAAAAAGATTGACTAAAACGTTAGAGATGAGTGTGTGAGAGCATTGGACAGTCTGAATAAAATAAGGCTAAAAAAGAAAATAAATAAATAAATAAATGGGGAAGATTGTTTTGGGGTTTTTGAGAAATATTGTTAAGCAAAAAGGGAGAGAGAAAGGGGGGAAAATGAGGAATATGTGCAAAGGTTTTTGTTGATATATAGCACCTACGATAGATTAAAAGCA

Gene Sequence:

>Vu_07509(-)

ATGGAGGAGAAGAGAGAGAAAGAAGCGAACTCAAAGTCATCATCCACCATGGCAAATTCTGTGGCATTTTCCGACGAGATTCCCAACATGACCATGACCATGTCCTTCCCTTTCTCCCCTGCTTTCTCCACCATCTTCGACATCATGCCACCTCTTCCTCCACCGCCATCTTCGTCCTTGCCTCACGATCCAAAAGCTTCAAACTTTCCCTTCATGGACTTGCTGTCTGTCCCTGATTATATCCCTTCCTTATTCGACTGGCCCCAAAACACCGCCGTCACCTCACCACCACCGCCACCAGCCCCCACCCAAATCACCCACGCGCTTCCCTCCCCGGCCAGCTCCAATGTCCCCGACGGAGGCTCCGAGGTCCTCAACACTCCTCCGTCTCCCAACTACTCCTCGATTTCCTCCTCCTCGAATGAGGCCGCCGCGGCCGCCGCCAACAAAGCAACTGGAAATGAAGACGAACCGGAGGAGGATGAAACGGCAACAGATGCAGCAGGAAAAGGAGAAGACCAAGATCAAGACAAGTCTAAGAATCAGTGAGTAATGATGGTGATGAAAGTAAATATTAATAATAATAGCGATGAATGAAAATGATTTAGTTTCTTAATTTTAATCTGTTTCATAAAAAAATAATGGAATTAATTCTCTGTCACTGAATGTGCTTGTGTGAAATAATAAAAAGTAATAATAAGATTAAACGAGGATAGATTTTGTTACAGTCGCAAAGACAGACAGGGTTGCCGAGTGGTGAGAATTGACGGAGTTTCTGTGTGTGTAAGTCTGTGTATGTTCATTGAACTTAAAATGGGTTTTCGTTATACTGTCATTTCTTTCCTATCTCATCTTCTTCAGATTTTGATTTGTTGTGTTTGTTTGTTATATAAATATAAACCCGAGAAAATAAGAGAAAGATTTTGATTATTTGCTTTACTAAATTTCCACGGTTAGGCCGAAGCCGAAAAAGAAGCACCAAAAGAAGCCAAGAGAACCAAGATTTGCGTTCAAGACAAAGAGTGAAGTGGATCACCTCGACGATGGCTATAGGTGGCGCAAGTACGGTCAGAAAGCCGTCAAAAACAGCCCTCATCCCAGGTAACACCAATAATTAATTAATTAATTATTTAATTAACTAATGTAGATTTCATTTATCAAATCTTGATTTAAGTAACATTGATTTGTTCTTCTCCTCTAGAATTATTTTGTTCTTTCGTTTTATTATGTATGCGGTGCTTTGGATTGCGACTTTATAATTAAAATATTTCTTGCGGTGCACGCAAAATAATCAACAACAGGAGCTACTATCGTTGCACCACCGCGGCATGCGGCGTGAAGAAGCGCGTGGAGCGTTCCTCGGAGGACCCTGCGGTGGTGGTGACAACCTACGAGGGGCAACACACGCACCCTTGTCCTGCCACGTCACGGGCTAGCCTCGGGTTCTTGCACTCCGAACCAAGCGCGTTCGGACCCACCAGTGGACTCTTCATGCTGCAACAACAACAACACCAACAGTTTCGTCATGACCAAGCACAGGCACAGGCACAAGCACAAGCTCAAGCTCAAGTAGCAATGTTGTACAACTCCACAACCACCAGCACCTCGTCTTCATCATCACCTCTGAATGTTGTTAACTCAGCTACTTGTATAAACGACTATGCCAATACGTCGTCGTTGAGTGGGTTCCTTCAGAGCCAAGAGAATCTGCGAGCTTTTGCGCTATCTAGGGTGGGAGGTCCTCAGGGTTTCTTCAATGGGCTTCTTCAGGACATGCTGCCAACGCAGATGATGAATGAAGAGAGGGGAGATCGTGTCTAG