Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_07493 LG1 106449515 106451309 PREDICTED: transcription factor MYB108-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   response to fungus, response to fungus, positive regulation of anther dehiscence, regulation of transcription, DNA-templated, response to fungus, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, positive regulation of anther dehiscence, positive regulation of anther dehiscence, response to fungus, positive regulation of anther dehiscence
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, sequence-specific DNA binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
T/G 106449658 5_prime_UTR_variant
C/T 106449701 synonymous_variant p.Cys9Cys
T/A 106449885 intron_variant
C/A 106449886 intron_variant
T/C 106450123 intron_variant
C/A 106450274 synonymous_variant p.Leu66Leu
C/T 106450277 synonymous_variant p.Asn67Asn
T/C 106450558 intron_variant
A/T 106450726 missense_variant p.Lys125Asn
A/G 106450728 missense_variant p.Gln126Arg
C/A 106450857 missense_variant p.Thr169Asn
G/A 106450916 missense_variant p.Gly189Arg
T/C 106450938 missense_variant p.Met196Thr
A/T 106451153 missense_variant p.Ser268Cys

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_07493.1
MDEKPRRTCNTLFTDDEIDLRRGPWTVDEDLTLINYIATHGEGRWNTLALSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAAATATASVATNNAYTSENNIKNNQIEVHNLKDKMGLIEPSLMNNDFVGSYVMQSHTPENSSTALSSSDSFGTQVSTKSDLTDYYSVPVSSNNNNATPADYYQPSQMSYSNCIGSPPGFFPQGLDFQSLDPWNLQNGDSSDNFWNVENMLFLEQHLMNDNM*


CDS Sequence:
>Vu_07493.1
ATGGATGAAAAACCAAGAAGAACCTGCAACACCCTTTTCACTGACGACGAGATCGACCTTCGACGAGGCCCTTGGACCGTCGATGAGGACCTCACTCTCATCAATTACATTGCCACTCACGGCGAAGGTCGCTGGAACACCCTCGCCCTCTCTGCCGGGCTGAAACGAACGGGGAAGAGTTGCAGACTGAGGTGGCTCAACTATCTTCGTCCTGATGTTCGACGTGGAAACATCACGCTTGAGGAACAACTTTTGATCCTGGAGCTCCATTCTCGCTGGGGAAACCGATGGTCGAAAATTGCTCAATATTTGCCTGGTAGAACGGACAATGAGATAAAAAACTATTGGAGAACTCGTGTCCAAAAGCATGCGAAACAGCTCAAATGTGACGTGAACAGCAAACAGTTCAAGGACGCCATGCGTTACCTTTGGATGCCGAGGTTGGTGGAACGCATTCAAGCAGCTGCAACTGCAACTGCCTCGGTCGCCACCAACAATGCATACACCTCTGAGAACAACATTAAAAACAACCAAATAGAGGTTCATAATCTCAAGGACAAAATGGGATTAATCGAACCTTCTCTCATGAACAACGACTTCGTGGGTTCCTACGTCATGCAAAGTCACACCCCAGAGAACAGTAGCACGGCTTTGTCGTCATCGGACTCGTTCGGGACTCAAGTCTCAACAAAATCCGATCTCACCGATTATTACAGCGTTCCGGTTAGCAGTAACAATAACAACGCTACTCCTGCAGATTATTATCAACCCTCTCAAATGAGTTACTCCAACTGCATCGGCAGCCCACCCGGGTTTTTCCCTCAAGGATTGGATTTTCAATCCCTAGATCCGTGGAACCTCCAGAATGGGGACTCGTCTGACAATTTTTGGAACGTCGAAAACATGTTGTTCTTGGAGCAACATCTCATGAACGACAACATGTGA


Promoter Sequence:
>Vu_07493::LG1:106447515-106449515(+)
GTTGAGGAGGAAGTGTTGGCCAGAGATGGACCAGTCCCTAGTCAGAACCTGCTTTATGCAACTTAATAAGAGCATCGGTTTCAGAAAGAATGTTCCTAGGGGCAAGGTCCCATCAACCTGCTGCAGTGCCCACACCACCATAAAAAAACCCTATTTTTTTCTTTAAAATTAAAAGCTGGATCTATATGTGATAATTGTGAATAAAGTTTAACGTAAAAGTTGCGAGAGAACAAAGTTTCTTTCAAGCTGCATTGAAAATCGACTAATAATCTTGCAGGGGAAAGTTACCTTTCGTTTGGGAAAAGGTGAAAAACATAAATATTTTACGAAGAAACAATTTTAAATATGCAAATAAAACTAAAACGATGTTGTGTGAAGCTGATGAAGATGAAAAATGGTCCCCGGAAAGGTGGTAAAAATTCAAAGGGTAGTAAATGAAAATTTGATTGCAGCCGTCCTAGACGAGGCACATGACACAAAATGTATAAATCTTGGCCTTATTAAATTGCACCATTACTTACAGAGAGAGTGAGAAATTTTCATTTACTACACAGAACTGTAGTCTACTTTCGATTTCAATGCCTCAGATTAGTGCCTGAAGCGCTCGGTAATATCACCAATATTAAATCCTTATTTATTACCAAACACTTCATCTTTAATTCCCTAAGTATTGAAGATTGTTAAGCGTGTGTGTTGTTTATTACTTCCTTTCATGTTTCTCACTAAACAGAGACATGACATAAACCAAAATAACATTTAGCCTATCACAATACAAGCTTTGCTTCACACAACTCCTTCAACTCCATCATTTCAGAGTGGCCTATATTAAAAGTAGAGAAGGTTTGTGACGTGACTCAGATAGAAAGAAAAGAGCAAATTAACAAATTCATCAATTAATTTGGCTTTAATTGCTATATATGTATAAAAATAAAATAAAAAATTATTGAAAAGTTAACTTTAAATTTAACTTAATCTTATAAAAATAATTTATAAAATAAAGTCTGTATCATTTTTTATATTATAAATTAATTTTGTTTTTAGTTAATACGTTATTTCCAACACATTTTTTTATATTAAGACATAATAAAACTAGATATTAATGAATGATTTAATTGTTAAAAATGAAAGAAAGTTTCACATTGAATGAAACAAGATGAATATAAATTTATTATATCTACATAAAATAAGAAACTTTTTAAAGTAATATCAAAAACATGCAAGTCCCTGAAAGTTTAACCAAAAGTAGAGAATATCTTAAATTTAATTCAATATTATAAAACTTCTTATAACATAATATTTACACATATTTTTATATTCTAAATTAACATTACATTAACGGAGACTTTCAATTTGGATTGATGCGTATAAGAACGAGTGAAATGACTCTTCAAAATGGTTTTATTTTTATCTAACAGGTACACTAGAGTTGACAAGTTGAGAATGAGACATGAAATGCCTTATCTTATAATTGTGGTATATATATATACCCTTTTGAACATATGTTTAGAAAGATAGAAAAGAAGGCCATTAATTATTGTTTTCACGAAAATGAACCATTGATTATTTTTTGAAGCCACGTTAAATAAAAAAAATTACAGGAAATTTAATATTTGTTAAATATGTAGCGATATAGAAAGCAGGTGTATTTTGTCATGTGCAGAGGAAGATATTTGTGTAAGTAGTATGAACACAGAAAGAGAGGAGAGGAGGGAGTCCGTGGTCAGACAGAACAGCTGGTAACTTGAAAACGCTTAAAGTTAAGATTGAAAGTGTGTTGTGTTGTGAGCATTGGTACGCACGCGCACACAAGAAAGAAGGAAAGAAAGTCAAAGTGTGATACTTAAAAACTATAATTAATTATGCTCCAAATTACTACACATTCTTAAGTGTTACTTAATTAATCATCTTCTCTCTCTTCCATCGTTTTCCCTTTCTCCCACATTTTGCAAAACCCCCTCCTTCCGTATTTATAAGAACCTCACCCTTCTTTATCTCCCTTG


Gene Sequence:
>Vu_07493(+)
GTAACAATCCAATCCAACACAACTCAACTCCCTTTTCTCTCCCTTTCTCAATCTCAATCTCCATCCACCGCCAAACTCAAACACAACCCAACAAACAAACAAACAAACAAACCAACCTCTTTTCTTCTTTCCTTTTGATACAATCTTAGTTGCGTCACCAATGGATGAAAAACCAAGAAGAACCTGCAACACCCTTTTCACTGACGACGAGATCGACCTTCGACGAGGCCCTTGGACCGTCGATGAGGACCTCACTCTCATCAATTACATTGCCACTCACGGCGAAGGTCGCTGGAACACCCTCGCCCTCTCTGCCGGTATATATCTCTTAATTCATTCAGATTTCTACTTTTCGATCTTCCACCGTAATTCTGGTGTCATCTCTACCTTTTAATTGTTCCAATGGATTTTGGGTAGCCAAAGTTCCATTCTTTTGGTTTTTTGGATAAGTTTACAGATATGTGTATGGTATATAAAATTCATGAATATTGGTTGGTGGTAATTGCTCGGGCGCACCCACTTGTGAAAAAAGGGAAAAGAAAATGAATTGATGCTTCCTCTCTCAATCATTAACGTTTCAGAAAAAGAAAGTGCCATATAAAGGAGGCTGGGAATGCTCTTTCGTTTTCCCTCCTTTGCAGTGTTGTGTTATTTATACCGGCTGTGCTTTACCAATCTGAGTAATAAGTTATATAACCTTTCTCCTCATGATTTCATAGGGCTGAAACGAACGGGGAAGAGTTGCAGACTGAGGTGGCTCAACTATCTTCGTCCTGATGTTCGACGTGGAAACATCACGCTTGAGGAACAACTTTTGATCCTGGAGCTCCATTCTCGCTGGGGAAACCGGTAATTAATTACCCTAAATATGCATGCATTCGTTTCAAAATACCTATTCTTCTTTTCTATATCTTATGCATAAACTGTTGAACATCAAATCAAGGACCTTTAATTATTATTATTATAAATCATTTAACGATTCTGATATTACAGTAAATGTTTTCGTGTGGGATAAAAATAGTGACAACCAAAAGAGAAAGCAATATATATTATATATTAAGAGTTTTTCTTTTAGTAGAAATATATGTGCTTTATTATTAACTACTGTTTATGGGTGGGTTCAGATGGTCGAAAATTGCTCAATATTTGCCTGGTAGAACGGACAATGAGATAAAAAACTATTGGAGAACTCGTGTCCAAAAGCATGCGAAACAGCTCAAATGTGACGTGAACAGCAAACAGTTCAAGGACGCCATGCGTTACCTTTGGATGCCGAGGTTGGTGGAACGCATTCAAGCAGCTGCAACTGCAACTGCCTCGGTCGCCACCAACAATGCATACACCTCTGAGAACAACATTAAAAACAACCAAATAGAGGTTCATAATCTCAAGGACAAAATGGGATTAATCGAACCTTCTCTCATGAACAACGACTTCGTGGGTTCCTACGTCATGCAAAGTCACACCCCAGAGAACAGTAGCACGGCTTTGTCGTCATCGGACTCGTTCGGGACTCAAGTCTCAACAAAATCCGATCTCACCGATTATTACAGCGTTCCGGTTAGCAGTAACAATAACAACGCTACTCCTGCAGATTATTATCAACCCTCTCAAATGAGTTACTCCAACTGCATCGGCAGCCCACCCGGGTTTTTCCCTCAAGGATTGGATTTTCAATCCCTAGATCCGTGGAACCTCCAGAATGGGGACTCGTCTGACAATTTTTGGAACGTCGAAAACATGTTGTTCTTGGAGCAACATCTCATGAACGACAACATGTGAAACATTCGAACTC