Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_07340 LG1 104836082 104841446 PREDICTED: mitogen-activated protein kinase kinase 2
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   response to cold, protein phosphorylation, response to cold, pollen-pistil interaction, response to salt stress, defense response to oomycetes, response to cold, MAPK cascade, defense response to other organism, response to cold, protein phosphorylation, protein phosphorylation, defense response to other organism, response to cold, MAPK cascade, cold acclimation, protein phosphorylation, response to salt stress, response to cold, defense response to oomycetes, MAPK cascade, response to salt stress, response to salt stress, protein phosphorylation, response to salt stress, defense response to oomycetes, cold acclimation, cold acclimation, defense response to other organism, pollen-pistil interaction, response to salt stress, auxin transport, xylem and phloem pattern formation, protein phosphorylation, cold acclimation, pollen-pistil interaction
Cellular Component   is active in   cytoplasm
Cellular Component   located in   cytoplasm, plasma membrane
Molecular Function   enables   protein binding, protein binding, protein binding, MAP kinase kinase activity, MAP kinase kinase activity, protein serine/threonine kinase activity, protein binding, protein binding, protein binding, protein binding, protein binding, MAP kinase kinase activity, protein binding, MAP kinase kinase activity, MAP kinase kinase activity, MAP kinase kinase activity, protein binding, protein binding, MAP kinase kinase activity, protein binding, protein binding, protein serine/threonine kinase activity, protein binding, MAP kinase kinase activity, MAP kinase kinase activity, protein serine/threonine kinase activity, protein binding, protein binding, protein binding
Pathway   B 09132 Signal transduction   C 04016 MAPK signaling pathway - plant [PATH:ko04016]
SNP Position Effect Amino acid change
A/G 104836247 3_prime_UTR_variant
C/A 104836734 downstream_gene_variant
C/G 104836847 downstream_gene_variant
C/A 104836871 downstream_gene_variant
C/T 104837232 downstream_gene_variant
G/T 104837294 downstream_gene_variant
T/C 104837367 downstream_gene_variant
G/A 104837800 missense_variant p.Pro271Ser
T/A 104837801 synonymous_variant p.Thr270Thr
T/A 104838199 downstream_gene_variant
A/T 104838204 downstream_gene_variant
T/A 104838309 synonymous_variant p.Thr162Thr
G/A 104838329 synonymous_variant p.Leu156Leu
A/T 104838408 synonymous_variant p.Val129Val
A/T 104838614 downstream_gene_variant
A/T 104838781 downstream_gene_variant
G/T 104839033 downstream_gene_variant
T/G 104839038 downstream_gene_variant
T/A 104839170 downstream_gene_variant
A/G 104839178 downstream_gene_variant
C/A 104839417 downstream_gene_variant
T/C 104839601 downstream_gene_variant
T/C 104840255 downstream_gene_variant
A/G 104840308 downstream_gene_variant
A/G 104840503 downstream_gene_variant
G/T 104840543 downstream_gene_variant
G/A 104840573 downstream_gene_variant
A/C 104840593 downstream_gene_variant
G/T 104841439 5_prime_UTR_variant
G/T 104841441 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_07340.1
MKKGNLGLGLKLSVPVSDQSNFAKFLTESGTFKDGDLLVNRDGVRIVSQSDVEAPPPIKPTDDQLTLADVDVIKVVGKGNGGVVQLVQHKWTSQFFALKVIQMNIEESMRKQIAQELKINQQAQCPYVVVCYQSFYENGVISIILEYMDGGSLADLLRKVKTIPEPFLAAICKQVLKGLVYLHHEKHIIHRDLKPSNLLINHIGEVKITDFGVSAIMESTSGQANTFIGTYNYMSPERINGSQRGYNYKSDIWSLGLILLECALGRFPYTPEDQSEIWESIFELIETIVDKPPPIPPSGQFSTEFCSFISACLQKDPKNRLSAQELMGHPFVSLYDDLEVNLSSYFSNAGSPLATL*


CDS Sequence:
>Vu_07340.1
ATGAAGAAAGGAAACTTGGGGCTTGGTCTCAAACTCTCTGTTCCTGTTTCTGATCAATCCAATTTTGCCAAGTTCCTGACTGAAAGTGGGACTTTTAAGGATGGGGATCTGCTTGTCAACAGGGATGGAGTTCGAATTGTCTCTCAGAGTGATGTCGAAGCTCCACCTCCAATCAAGCCTACAGACGACCAGTTAACTTTGGCAGATGTAGATGTTATCAAAGTTGTTGGAAAGGGAAATGGAGGGGTAGTCCAATTGGTACAACATAAATGGACTAGTCAGTTTTTTGCATTGAAGGTAATTCAAATGAATATTGAGGAGTCTATGAGAAAGCAGATTGCACAAGAGTTGAAAATTAATCAACAGGCACAGTGTCCTTATGTTGTTGTCTGCTATCAATCATTTTATGAAAACGGTGTCATATCAATCATCCTAGAGTACATGGATGGGGGTTCCTTAGCTGATCTACTGAGGAAAGTTAAAACAATTCCAGAGCCTTTTCTTGCTGCCATCTGTAAGCAGGTGCTGAAGGGTTTAGTTTATCTTCACCATGAAAAGCATATTATCCACAGAGACTTGAAACCTTCTAATTTGTTAATAAATCATATAGGAGAAGTAAAGATTACTGACTTTGGTGTGAGTGCAATTATGGAAAGTACATCTGGTCAAGCAAATACCTTCATTGGAACTTACAACTATATGTCTCCGGAGAGAATCAATGGAAGCCAGCGAGGCTACAACTATAAAAGTGATATATGGAGTTTGGGACTAATATTGCTAGAGTGTGCTTTGGGGCGGTTTCCATATACACCAGAAGATCAAAGTGAAATTTGGGAAAGCATTTTCGAGCTTATTGAAACCATTGTTGATAAACCTCCTCCTATTCCTCCGTCTGGACAATTTTCTACAGAATTCTGCTCATTTATCTCAGCATGTCTACAGAAAGACCCAAAGAATCGACTGTCAGCTCAGGAATTAATGGGACATCCTTTTGTCAGCTTGTATGATGACTTGGAGGTGAATCTTTCATCTTACTTCTCCAATGCAGGATCTCCTCTTGCTACCTTATAA


Promoter Sequence:
>Vu_07340::LG1:104841446-104843446(-)
AGGATGAGACAGGGATTAATGACGCTCGTTTTTCTAGGGTCTTACAGAAAGTTTTAAGAGAATCTAAATTCGAGAAACTTTGTAAATCAATTTAGGAATATTGAATTACATAAAAATATAAAATTTTCTTAGCAATTTAAATAATGAATTAGATAATCCTAATATTGGCAATTACTGACCATAAAAAATACACGTTCAAAACAAAATTGCATATCATCATTAACAAAACTATCATTATATGTAATGAAATTGTTAATTTTTGTAGCAGTCATTTAAAAAGTTATATTAGACATATTGTTTAATTGATTAACATCGTAAATAGTTAATATTAACAATGCATCTTCATTAAGTTTATCTATCTAGATTATACATAAACATAAATATTTTTTTTACTTGCCAACCAACTAAACACTAGTCTGTTATATTAAAATAATATAAAAATATATATAGTTGAGGTAAAAGTAAAAAGACAATATAAATTATGTATATATAACTTTTTAAATATTTTATAAGGATAAAATTGTAGCTAAACTCTAAAATTCAAAATGAATAATATATTAATTTTAATAACATTATCTTAATATACAATAGAAAACAAAGTTGAGGTCAGAAAAAATTATCCACATTTTTTATAAGCATATTTCGCTTTTATATACAACTCAACAAATATCAACGTATTAATAGTTTGTATTCTTTTAAATGGACCTATATGTGACAAAGAATATTGAAAAGATTTACTAAACATATAATTATTATATTTTGGTATTCATATTTATTAAAAGTTCTCATTTAGGATACATATACAAGTTTTTCTCCAAAAATATTAGAAATCTGTTTATTTTTTAAATGAGTCGATTAAGCATGCACATGAAAGGTATAAATATAGTTGTTCAACTAAAAATGATTTTCAGTACTTTTAAAGTATAATTAATAATCATCAATTCTGCTATATTAGGTAGAAATACGAAACAGTTAACTTTACTAATTAAAATCAATTATCCTTAAGTTCACTACATTAATAATTTAGAATAATTAACTCAACTGATTAAAATAATATAAATTCATATAACAGATTTCTTTAAAATAAAAATACTTCTTTTATACTTATAAAAGTTTTTAATAGTTTTATTTTTATTTTTAGATGTTTAATATTTTGTTACTTGATAGTTGTTTATTATTATTTTTTTTGTTTTCTCTGTTAATTTAAGTTTTTTTATATTTAATTATATTTTAATTTTTAACAAAATTTAAATAAAAATAATTAAAAAAAACTATATTTAATTATTTTTAAAATCCTTTTATATAAAATAAATTATCACTTTATCATTAGAAAAAGGTCAATTATTTTAATAGTTATTAATGTCATAATTTATTTAATGTCATAGTCAATTTTAAACTTTTATAAAATTTAATAAATTTATTAATTATTCTTCGTTGATCATCAGAATTTTTTTTATAAACAACAAGACATACACCCAACTTTTCCAATATTTTTTAAATCGATATGTAATTCTGTATCTGTAAGTAGATATGTTTGGATTAAAAACTACAATTCACCATTAATATTTTTGTATTATTAATAAAGAAGCTCTAAAAAAATCCCTGAAACTTTTATTAAAATAAGTTTAGTCTTTAACTTTCGCCTAAAAAATGGTTAGAATTTATAAAAAACTAAACAAAAAATTAATAATTTATGTAATATATATTATAATTGTCTTAAAAAATGTTTTGAATTTGGGTAAGAAAAGGCATAGAAGAAATATTGGTAATTGTTTTGAAGAAAAAGAAAAGTGTGAGAGAATATTAAATAAGGCAGAAAGTGTGAAAAGTCAACAGCAGCTCATCTTCAAAATTGCTTCTTTCTTCAATTCTCAGTTCGTCAATGGTGACTGCTCTCTTTGTCAGCCAATCACAAAATTTATAATTTTCAGTGTATTTTTAACTTTTAAAATACTGTCACCAATAGTATATATATATACTGTGTACTATGTCTTGATTTT


Gene Sequence:
>Vu_07340(-)
ATATACCCAAATCATAGAGACGGAGAGAGAGAGAGAGTCTAACTAGAAATTTTTTCTTTTCTTTGAAAACCTAGTGAGACTGTGTCAGACTTTGTGAAGTGAACCCCATCAGAGTCCCCGAATCATGAAGAAAGGAAACTTGGGGCTTGGTCTCAAACTCTCTGTTCCTGTTTCTGATCAATCCAATTTTGCCAAGTTCCTGTGAGTCTCTCTCTATCTCTCCCTCTGCTCTGTGCGTGATTGTGAATGTGATTGGTTAATTATGCTTGGGTTTTGACCAAATGGAATTGATGGCATGTGGGGGGTCTTGCAGGACTGAAAGTGGGACTTTTAAGGATGGGGATCTGCTTGTCAACAGGGATGGAGTTCGAATTGTCTCTCAGAGTGATGTCGAAGCTGTAACATATTTCTCTCACCTTTTTCTTCTACTAAAGGAAACATCTTTCTGTGCATTCTTGCCTTTGCAGTTTGTTTCAGCAAATGTCCATCTTGTCTTAAATAATATATATTTTTGTTCATTTTTGCGTTTGCAGATTGTTTATTTGTTTGTTTCGGTAAATGTCCATCCGATTTCTCAGTTGTTTCTTAAAGAATATATGTTTTTGCGCATTATTGCCTTTCCAGAATGTTTATTTGTTTGTTTCAGTATGTATGCACTCTTCTTGCTCAACTGTTTCTTTTCATGAATTTGATCTTTTGGATCTGATGAAATGCCTTGTAATAAGGGGTTCTTGATTTTTCTGTGGATTCATTGTTCTCAGGTTTCGAACCCAGTGGAGTATTGTATTTTTTGAAATGAGTAAAAAAATTGCGAAGTGGATTATTTGCTGTTTTCCCTGGCCTTTATTTTCTTTTATATGTCGGTGGCGGCGGCGGTATTAGCGGTGATGGGGCTATTCTTTGCTACTGTTTTCAAAGTGAACAAAATTTTTGTTATACATTTTTTATCTTATTTGTGTAGTATCTTTAATCAAATGGAGAACAAGTTGCACGCTTATCAAGTGAAACTGTGCTCAGCACAAGTCTTCCAATTCACGAGCCACTAAACGAATCGATTCTTTAAATTCATTTCTCTGTAAAACGAAGTTTGTTGCACAAAATTGTTTGCATTCTGAGTTAATGTTGGGTCCTCTTCTTCTTTCCTACATCAATTCTTTCAGCAATTCCTGATGTATTACATTGTCAATCATGATAGAAAAACATAAATCTGAATAATTATATTGAAATGTAAACAATTTATAAAAAACAAAATGAGTTAATAGTAGATACATTATACATGGTAACATTAAACGTGGGCCCGTGCTTTTATAAGTGACCATGTTTAAATTTGTTCCTATTAAACTTCTAATATCTATATCTGTGCATTCCAACCAGTGGTTTAAGGTATAAAAAGAGCAGCACATGGAGGCTTGAATGTTGAACTTCCTGCTTTTTTTATCCTGTCAAAATACACAATACACGTGCTGGTTGAATTTCTGACAATTTATTGTATACGGTTATAAAATTCGTGATATGTTTTCAGCCACCTCCAATCAAGCCTACAGACGACCAGTTAACTTTGGCAGATGTAGATGTTATCAAAGTTGTTGGAAAGGGAAATGGAGGGGTAGTCCAATTGGTACAACATAAATGGACTAGTCAGTTTTTTGCATTGAAGGTACACTTGCTGCATGTTGCATACGATGCTTTGAATTTGAGTAGTCTGTTCTCTTATTTCTAGTTCATTTATCCTTGTATTGGCACTGCCTACGCATTTAAATACTTTTTGATAATGCCCTTCCCCTCTCCTTTACATCCGTTTCTTTGAGCAAGGATTTTGAAAACTTGTTTTCTGTATGCAATTTCAGTGTCACTGAAAGGCACATTATCTGTAAGTTTCAGAATGTTCTTTCTTTCAATTAGTGCTTAATCATTTAATTTCATTAGTAGTAGTTTGTTTTCATTCAAATAGAAATTTTAGTTTACTTCAATTTGTTGCTGGTGCTTTCTTTGTTATGTGATAACACGATACAAACCAAGAATAGAAATGGGAAAGGAAAGAAATTTTTTCTTTAATAGGTTCCCTCCAAAGGTTTTCCCATTCACAAAGAGCTATTGCTCTATTTACAAATGACAACTTATTCCCGAATCCTGCTATTGTACCTCCTTCCCTATTTGTATTTAGTTACTCCCTCTGATTAACTAACTGATTAATATTCCAAATCCCCTTCTCTAATGCCCTTTCAAAGAACATCATCTTTTTGTTAACCCAACTTTGCACCTCAGAATTGTTTTCAACGTCTAAACTTTCCTTCTCCCCTTCTCTGATTTAAGGAGGTTCTCATCCCTAGGAACTTGTATATATTAATCGATCATAGAACAAAAAACAACTAATCTTGTGTTTAACATCTGGTCTAAGGTCTACATTCATTTCCTTTTATTTTTCTTTTTAGTTTTTGAAAATAGAGCAGCAATGATGGGGTAACATGTCCCATAATGGTCCCCTCCTTCCAGCAATTTTTAATTTCCATCTTGCTTATTTTTCAAACTAGTTTTTGTAGTTGAACTATGACAGGCTTATTAATATGCCTAACTTGCAAGTATATAAAAGAAGAGAAAAGGGGAGCAAGGATGGTCATGCGAAAATTAATATTGGGCTGGAAGGTTACATGGGCCTTGGAGTAAATGAGTGGAAAAGAGGGCATAACTTATTGGAGGTGGCATGCAGGAACTAGGGGAACGAGATGCTGAATCAGTTTGTAACGAAATGGGTGACTCTGGGAGGGAGCTGGTCCTCTGTACAGTGGGCTTTTCTTTAATGTCTCAGTCTTTTCTTTTGTAATCGGATAGTTATACAACATTTTTACTCCCTGTGTTTCTATTTGATTCCAACAAACAAATAACTTTCTTTTTGTTTATATAAACAAGCTTAATATTTATCACTTAATGTATGCATCGTTCACAATTCAGGTAATTCAAATGAATATTGAGGAGTCTATGAGAAAGCAGATTGCACAAGAGTTGAAAATTAATCAACAGGCACAGTGTCCTTATGTTGTTGTCTGCTATCAATCATTTTATGAAAACGGTGTCATATCAATCATCCTAGAGTACATGGATGGGGGTTCCTTAGCTGATCTACTGAGGAAAGTTAAAACAATTCCAGAGCCTTTTCTTGCTGCCATCTGTAAGCAGGTAAGAAGTAAGGAATTTACCTTCAGTCTTGTACCCATAATTCTATTGAATGAATCCCAAACAAGATCTGATCACTTTCTCTTTTAATGATGTAGGTGCTGAAGGGTTTAGTTTATCTTCACCATGAAAAGCATATTATCCACAGAGACTTGAAACCTTCTAATTTGTTAATAAATCATATAGGAGAAGTAAAGATTACTGACTTTGGTGTGAGTGCAATTATGGAAAGTACATCTGGTCAAGCAAATACCTTCATTGGAACTTACAACTATATGTCTGTGAGTAATAGGTGCAACTATATTTATTAATTTACTACCAGAATATGCTAGTGTTTCCTAGAATGTAACATACACTGCCAATTTTACAGCCGGAGAGAATCAATGGAAGCCAGCGAGGCTACAACTATAAAAGTGATATATGGAGTTTGGGACTAATATTGCTAGAGTGTGCTTTGGGGCGGTTTCCATATACACCAGAAGATCAAAGTGAAATTTGGGAAAGCATTTTCGAGCTTATTGAAACCATTGTTGATAAACCTCCTCCTATTCCTCCGTCTGGACAATTTTCTACAGAATTCTGCTCATTTATCTCAGCATGGTAAGTTTAACGTATGATACTACTTGTGTAAAGACAAGAATCTTAATCCTTCATAAGAAAATGAAACACAACCACACACTGAGAAAGCTAACGTAACTGTAGCAGTTTCTTAAAGGTCATCCAGACGTAAGTGTAGATGCTTGAGGGGTTTTCATTTTTGCAGAAATGTAATGCACTTGCCATACCCATCAACCATTCTTTTGATTAAATGTTTTTAGGGTATATTTCTTAATTTCATTGAACAGAAGTTTTTATACATATAAAAGTTAGCATTTCCATCGTTATTTGCTTTTTTTGCCAGAAATTCTATTATACTATGTGCCTTTTATGTGGATGCTTGGGGAGCTTTCATTCTGCTGAAATGTAATGCACTTGTCATACCTTTCAGCCATTGTTTTAATTAAATTTTTTCTAGGGTATCTTCTTAATTTCATTGAACAAACGTGTTTAAACATGTAAAATTTAGCATTTCCATCATTATTCTCTAGGCTTTTTTCCAAAAATTCTATTTTACTATGTGACTTTATTTGTCTGCTGATCTTCCTTTTCAATCTTCACGATGTTTAGTCTACAGAAAGACCCAAAGAATCGACTGTCAGCTCAGGAATTAATGGTATGTGTAAATCTTGCTTATGTACACATACCATGTAGAATATTGTCTTTCTAATGTTATGTATCTGATTGAAACTTCAGGGACATCCTTTTGTCAGCTTGTATGATGACTTGGAGGTGAATCTTTCATCTTACTTCTCCAATGCAGGATCTCCTCTTGCTACCTTATAAAGGTTTGTATGCTCCAATCTTGGACTGTATTATCATTTATAAATTGAAGTAAAGGTTATTCTTTTGTTCTTTATTTACGAATATATCAGGTGTTCTTAAATGATAATGTATTAATTTGTCGTAGGCAGAAGTAGTTTTTGTTCTGTATCGAGGAATTTGTTTTCTTTGACAATGCTTTGAAGGTAATTTTTTAAAATTTGACAAGATCATTTGTTATGAAAGTTTGTCCTGGGTTGCTTATGGTTCTTTAAATTCAGATGTTGTTTCCTAAATTACGATGGTAGGATGTGCTTTCATGCAATTTCAAGTTTCAGACACTAATATTTCCGGATGTTTAGTATTTCTAAACGGTGGAAGTAGTTTGTAACCGAAGATTTTCTTTCTGTTATAGAGCACTGCTTGCAAATATGAGGAGCGATTGCAGATGAGTTGAAGAACCAGCTCCTAGAGTTACGTCAAAGATTATTCTGTACTTAGTTATTGAGTGATTGAGTTCAAGAATTTGTTGAGAAACTCAGATGCAAGGGTCAAGAAGTTGCAGCAAAATGTTTAAAATTTTATGATTGCAACAGAATGTATCACTGGGATTTGTCCGAGTTGCTGATAATATGATCTGATGTACAAACTTGTATGAGATGAAAGCTTTGTCAGGCAGTCCCAAATGAACCATAAATCTGAGTCACGCTAGCTGAACAGTTTCTCAAGCTATATTTGAGACTTTGTATTTGGTTTAGTCTTGTCAAATTGTCTGATTGATGTTCGAGTGTTTATTGCGTGCAAATTACTAACAATGAAATTTACGAGTTGCTCC