Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_07293 LG1 104396311 104398146 "PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic "
 Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/C 104396348 synonymous_variant p.Ser417Ser
C/T 104396378 synonymous_variant p.Gln407Gln
T/G 104396411 missense_variant p.Arg396Ser
A/C 104396422 missense_variant p.Tyr393Asp
T/C 104396458 missense_variant p.Thr381Ala
T/C 104396466 missense_variant p.Gln378Arg
C/T 104396477 synonymous_variant p.Pro374Pro
A/T 104396498 synonymous_variant p.Ser367Ser
G/A 104396516 synonymous_variant p.Leu361Leu
T/A 104396577 missense_variant p.Lys341Ile
T/C 104396641 missense_variant p.Thr320Ala
C/T 104396752 intron_variant
T/C 104396851 missense_variant p.Gln280Arg
C/A 104397164 stop_gained p.Gly217*
A/G 104397197 splice_region_variant&intron_variant
T/C 104397234 intron_variant
C/T 104397261 intron_variant
A/C 104397355 missense_variant p.Ile187Ser
G/C 104397451 downstream_gene_variant
A/T 104397460 downstream_gene_variant
A/T 104397520 missense_variant p.Met154Lys
T/A 104397532 missense_variant p.Lys150Met
G/A 104397645 synonymous_variant p.Ile112Ile
A/C 104397930 downstream_gene_variant
C/A 104397977 downstream_gene_variant
T/G 104397989 downstream_gene_variant
A/T 104398039 downstream_gene_variant
A/C 104398054 downstream_gene_variant
C/G 104398059 downstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_07293.1
MGNCCSFSSGSNGDDHPNAKNHLGRNQFSAGLSNRRLIQNDNSSSRGCSSHFGGTGSLFGPSSSNNHISGNNTSTSFWGSENSHTSGVRDGGEFPHGEILNAPNLRVFTFAESRAATKNFGAGSVIGEGGFGRVYKGLIRGEGLTIAIKKRNPECLQGVAEWQSEVNFLGRLSHPNLVKLLGFRREDIELFLVYEFMHRGSLDNHLFGRGANVRPLSWDTRLKVMIDAARGLNFLHSMEMKIVHRDFKPSNILLDEAFTARLSDFGLAKSFSSLDQTHVTTQVMGTGGYAAPEYIATGRLKVKSDVYAFGIVLMEVLTGKRIQDIRRLLKQKSLTDWLKSNILNRGKIRMNMDAKLEGKYPTNSALEVALLALKCIRTEAKVRPSMKEVLERLEHIEADNEKPSDNSYNRRRVNRSQVVQQRDQPDGGQLN*


CDS Sequence:
>Vu_07293.1
ATGGGGAACTGTTGCAGTTTTTCATCAGGTTCTAATGGCGATGATCATCCCAACGCAAAGAACCATTTAGGGAGGAATCAGTTCTCTGCTGGTCTCAGCAACAGAAGACTAATACAGAATGACAATTCTTCTTCTCGTGGGTGTAGCAGTCACTTTGGAGGAACCGGCAGTCTGTTTGGGCCAAGTAGTAGTAATAATCACATATCAGGAAATAACACTAGCACGTCGTTTTGGGGCTCTGAGAATAGCCACACCTCTGGAGTCAGAGATGGAGGGGAGTTTCCTCATGGTGAGATCTTGAACGCTCCAAACCTGAGAGTATTTACTTTTGCAGAATCGAGGGCTGCCACCAAAAATTTCGGAGCTGGCAGTGTGATAGGAGAGGGGGGGTTTGGTAGAGTATACAAGGGTTTGATTAGAGGTGAGGGATTGACTATTGCCATCAAGAAAAGGAATCCCGAATGCTTGCAAGGAGTTGCGGAATGGCAGTCAGAGGTGAATTTCTTAGGGAGGCTTTCTCATCCCAACCTTGTTAAGCTGTTGGGATTTCGGCGAGAGGATATTGAGCTGTTCCTGGTGTATGAATTCATGCATCGTGGTTCCTTGGATAACCATCTATTTGGAAGAGGTGCAAATGTTCGGCCACTTTCATGGGATACAAGGCTGAAGGTTATGATTGACGCAGCTAGGGGACTGAATTTCCTTCATTCCATGGAAATGAAAATTGTACATAGAGATTTTAAACCCTCAAATATACTACTTGACGAGGCATTTACGGCAAGGTTATCAGACTTTGGGTTAGCCAAATCTTTTTCTTCGCTTGATCAGACTCACGTAACAACACAAGTTATGGGAACAGGAGGCTATGCTGCTCCTGAGTATATAGCAACAGGTCGTTTGAAAGTGAAAAGTGACGTGTATGCATTTGGAATTGTTTTGATGGAGGTGCTGACAGGGAAAAGAATACAAGATATACGGCGATTGCTGAAGCAAAAGTCCTTGACGGATTGGCTCAAATCAAATATACTAAATAGAGGGAAAATAAGAATGAATATGGATGCAAAGTTGGAAGGAAAGTATCCAACCAACTCAGCTTTAGAGGTAGCTCTACTAGCTCTCAAATGCATCCGAACAGAAGCCAAAGTGAGACCATCAATGAAAGAAGTTCTTGAAAGATTGGAACATATTGAAGCAGATAATGAGAAACCATCTGACAACAGTTATAACAGAAGACGTGTTAATCGTTCCCAGGTAGTTCAACAACGCGATCAGCCAGATGGTGGTCAATTGAATTGA


Promoter Sequence:
>Vu_07293::LG1:104398146-104400146(-)
TTATAGCGTGGGCAGTTAGTTATGATTAATTTAGAATCCAGAGTAGCCTTGATTGCAGCAAAACAGGTGCTTGAAAAGAGAGTTTAATATGCTTCTAATATAATACAAATATATATATTTACAAGATATTGTACGTATCATATATAAAGTAAGGATAGTTGTTTCTTATATTGAAACGTGAGTGTTAATCAATAATTATATTACTTGTAGGTATGTATAAATTGATGTATTTATGAGCTGTTATGGGTTAGTTGGAGCTGTATGGTTCTTAGTATTGATTAACTTAGATTCAATTGTGGAGATGTTATTTTTATAATTTGTGAGTGGTGAGTAATGTATATTGTTGAGATTGTGTATATGTTGATTGTGGCAAAAAGTATATGATTATAAAGTGATGAAAATATGATCCAAGTTGTAAATCAAGTTCCAGTAGGATCTCTTAGTGAGATCCTTAGTGTTTTAGAATGAAAGTAGGAGCTCAGTCTTGGGGGTCATTCTGAAACTCCAATGGCTAATCATACTCAAGTAGAGAGATTAATCCATGTGGTGAGGAGTAGCAGGAGGTCTTAGTCTTGGGGGCTTCCAGTATGCCTCAAGGCCCGGAACAGACTAACCTCGTGAGTGTGGCAGGGTGGGGAACCCAAGTTTCATAAGTCACTACGAGTGCAGGACCCGTCATAGCTCGACTATCATTCTAAAGTCCGGACGAGTCAAGTCTAGAAGATAACATGCTAGGATGTATGCCTTAAACTGCTTTGATTTAAGTTAACTCTTGTATGTTATGTGCTTGATATGATGCATGCTTTTATATAATTAGCTCACCCTTGCTTGTTTGTGTGCTTGTTGTATGTGTTTTCTTTTGCAATGATCATCCACTTGGATGTGAGCAGAGGAAGATGAGGTTTCTTTGGAGGCAACATTGGAGAGAAATGAAGATGATGCTGCAGCTTACACTCACTAGGAATTCTTAGTTCTCTTATGTCATTTTAAAGAACCTTGTTATGTTTTAAGTTTCAAATTCTGGACATATTTTGGAATAGTCTAGTGCTTGAAGTTTTAATTTCTAAGTAAATTCTGGAAGACTGTAATCCTATAATACTTTAAGTACATCTCTTAACTGCTTTCTAATATTATAAATTGGTGATGTCTTTACATATATATCTGCTATATATTTAGGATGTCACACTATATATTTGGGATGTCACATAAATAAATATATAAATTTGAAACTAAACAATAAAAATATCCAGACATACATGGGAAAAATAATTCCGCTATTGTATATAAAAGCCTTTTCATTTTATCTTTTATTACTCAAATAGCAAGAGAAATGGATGTCAAATGTAAAATTATTATTATACATCTGTGTGAGGATTATAGAGGCAAAAACTTAGCTTTTAATTTATTGACTGGTTTCTGCTTAAACTGTTCTCTTCTATTTCCCGTTTTGATCGTATCTCAAAGTTTGAAGTCTTACAAAATTTCAAATCCTGCTAAAAATTCAACATGGACTACGTCTCAAAGTGTCTCACGGTTTCATTTTTTCAACTAACCTCAGGACCCTGTCCTTCATTCTTTCTGGCACCTAATTTAGAAGTTTTCATGATAACATAAATGCACCTATGGTAAATTTTTGTCCATTCAGTTTAGATTTGTTTGGAAATAGAAGTATCTGGGGTAGGGTCAAATGGAAAGTGGAATTATGCTATTTTTCATTTTCGGTGTTTTATTCAGAACTAGCACTTGAAGTCCAATCTAACATGATTAGCAATAACATTGCATTTACTTGGAGTATTCTTGGAGGCTTCCTTTGTCCCGTCACATGCAAGTTGCTTTTTGTCTCTTTCTCTAACATTAATTCCTCTTCAAAAGGACACATGCAACTGTTTTTTCGATACTTTTCTAACCAATTCGCATTATATTGTGACTCAGATACTATTATCAACATTGCTCTAGTTATTTCTCTGATTTTACGCCAAGGAAAGAGCATAAACAAGTCA


Gene Sequence:
>Vu_07293(-)
ATGGGGAACTGTTGCAGTTTTTCATCAGGTTCTAATGGCGATGATCATCCCAACGCAAAGAACCATTTAGGTAAACCAAATACGATAGCTTTTGGCATTATGGTTATTTTTGTTTCTTTAATTGCTAAGATCATCACCAGGAAATTCCCAATTATCGAAAACATGCAAGGCAATCCTTGACATGGTTTTTCTACTTTAGATGACAAAGTTTGTATTTCTGTGACGATGTCTCAGGGAGGAATCAGTTCTCTGCTGGTCTCAGCAACAGAAGACTAATACAGAATGACAATTCTTCTTCTCGTGGGTGTAGCAGTCACTTTGGAGGAACCGGCAGTCTGTTTGGGCCAAGTAGTAGTAATAATCACATATCAGGAAATAACACTAGCACGTCGTTTTGGGGCTCTGAGAATAGCCACACCTCTGGAGTCAGAGATGGAGGGGAGTTTCCTCATGGTGAGATCTTGAACGCTCCAAACCTGAGAGTATTTACTTTTGCAGAATCGAGGGCTGCCACCAAAAATTTCGGAGCTGGCAGTGTGATAGGAGAGGGGGGGTTTGGTAGAGTATACAAGGGTTTGATTAGAGGTGAGGGATTGACTATTGCCATCAAGAAAAGGAATCCCGAATGCTTGCAAGGAGTTGCGGAATGGCAGGTAAGCATTAATGTCATTCTAAAATTAGGATTCTAAACTTTTCTTTGATTATCTTCTTTATGCAGTCAGAGGTGAATTTCTTAGGGAGGCTTTCTCATCCCAACCTTGTTAAGCTGTTGGGATTTCGGCGAGAGGATATTGAGCTGTTCCTGGTGTATGAATTCATGCATCGTGGTTCCTTGGATAACCATCTATTTGGAAGTAAGAAATGCTGCTGGTGCTAGCAGCATGCGTACCAATTATGCTGAATTGATTTGTCATTTTCTCTGATTTATGCACATGATTTCTCTTCTGCATGCAGGAGGTGCAAATGTTCGGCCACTTTCATGGGATACAAGGCTGAAGGTTATGATTGACGCAGCTAGGGGACTGAATTTCCTTCATTCCATGGAAATGAAAATTGTACATAGAGATTTTAAACCCTCAAATATACTACTTGACGAGGTAAGTTTTATTTTGGACTTGTTTGTATAATTTTTCTTCGTTTCTCAACGTAGTGCTTGCATGCTATTGAAGAATTCAAGTTAGTGAAAGAAAAAATCATTAGCTTTTTGCTTTTCTGACAGGCATTTACGGCAAGGTTATCAGACTTTGGGTTAGCCAAATCTTTTTCTTCGCTTGATCAGACTCACGTAACAACACAAGTTATGGGAACAGGAGGCTATGCTGCTCCTGAGTATATAGCAACAGGTGATATCCAAAAAATTTCTCTTAAACACTTCATAAACCTTTTGTAGAAACGTGACAAGATACTAAATCTTCACATGTCTGTTGTGTAGGTCGTTTGAAAGTGAAAAGTGACGTGTATGCATTTGGAATTGTTTTGATGGAGGTGCTGACAGGGAAAAGAATACAAGATATACGGCGATTGCTGAAGCAAAAGTCCTTGACGGATTGGCTCAAATCAAATATACTAAATAGAGGGAAAATAAGAATGAATATGGATGCAAAGTTGGAAGGAAAGTATCCAACCAACTCAGCTTTAGAGGTAGCTCTACTAGCTCTCAAATGCATCCGAACAGAAGCCAAAGTGAGACCATCAATGAAAGAAGTTCTTGAAAGATTGGAACATATTGAAGCAGATAATGAGAAACCATCTGACAACAGTTATAACAGAAGACGTGTTAATCGTTCCCAGGTAGTTCAACAACGCGATCAGCCAGATGGTGGTCAATTGAATTGA