Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_07268 LG1 104027126 104032202 PREDICTED: pathogenesis-related homeodomain protein-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   chromatin organization, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, response to auxin, response to auxin, regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, sequence-specific DNA binding, DNA binding, chromatin binding, protein binding
SNP Position Effect Amino acid change
C/A 104027185 5_prime_UTR_variant
G/A 104027243 5_prime_UTR_variant
C/T 104027251 5_prime_UTR_variant
A/C 104027428 5_prime_UTR_variant
T/C 104027431 5_prime_UTR_variant
C/T 104027439 5_prime_UTR_variant
T/G 104027844 intron_variant
G/A 104028044 intron_variant
A/C 104028100 missense_variant p.Asn9Thr
G/A 104028102 missense_variant p.Asp10Asn
A/G 104028106 missense_variant p.Lys11Arg
C/T 104028533 synonymous_variant p.Ile153Ile
G/T 104028659 intron_variant
A/C 104028762 intron_variant
A/C 104028764 intron_variant
G/A 104028765 intron_variant
G/C 104028772 intron_variant
A/T 104028950 intron_variant
T/A 104029554 synonymous_variant p.Pro255Pro
T/C 104030379 intron_variant
T/A 104030401 intron_variant
T/A 104030402 intron_variant
T/A 104030403 intron_variant
A/T 104030486 missense_variant p.Asp429Val
G/C 104031399 intron_variant
G/A 104031759 intron_variant
T/G 104031956 missense_variant p.Asn636Lys
C/G 104031967 missense_variant p.Ala640Gly

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_07268.1
MRDSVKKSNDKGSKKSGHLKARTKGKKDKVKVESKSHTKNVGTDVSKKRVISSLKIKGPRKDSSDKKLTTGQKLPLKNRKSSQKPSSKLPGKKASLSSRKEGKDADGEVKLQKMKRKRTKKRQRNNLDLDDPSRLQRRARYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRARKQILKCRLGIRDAIRQLDSLGSLSCIEDSAIAPGGSGCQEHIFCAKCKMREEPPHNDVIRCYGTCKRAFHQKCVDPSLDTENVPPGGQDWFCNFCECKMEILEAMNAHLGTHFSLHSAWQDVFKEEAAIPDGETTLLNPVEEWPSDDSEDDDYDPERKEDSHNINMEGTNDSASDDLSSSTSLCYSDDEHSPVHGVSHEYLFANTSIDSDESEDKACGRRQRKAVDYKKLYDEMFGKEAPAYEQLSEDEDWGPGKRKRREKECDAVDSLMTLHESENMHPNNEHNNMTKIISSGTNIRRHCFRIPRDSVEKLRQVFAVNELPPRSIREDLSKELGLDTEKVSKWFKNARYLALKSRKHQAEGAANQHKGITSTKNSILQNQEKTDLLKPKTLKITTSHSQKDVKNVSGRKKIKFSSKKRQPEIPPPPGENGNKDSMEMSDDVSLKKLLKKKKKRLVNFTFAGDSQTAELEFERLCKLKQKLISMKQKLTRIQRLDAKGSDEAHCNEASIVYVPTAVLREKTE*


CDS Sequence:
>Vu_07268.1
ATGCGGGACAGTGTGAAGAAGTCAAACGACAAAGGATCTAAAAAATCTGGTCATTTGAAGGCACGTACAAAAGGGAAGAAGGATAAAGTGAAAGTGGAATCAAAATCTCACACAAAAAATGTTGGCACTGACGTATCAAAGAAGAGAGTTATCTCTTCCCTCAAGATCAAAGGACCTCGTAAGGATTCTTCAGATAAGAAATTGACTACTGGACAGAAATTGCCTTTGAAGAACAGAAAATCTTCACAGAAGCCATCCTCAAAGTTACCAGGCAAAAAAGCTTCTCTTAGCTCTAGAAAAGAGGGGAAAGATGCTGATGGGGAGGTAAAGCTTCAAAAAATGAAGAGAAAGAGAACAAAGAAAAGACAAAGGAATAACTTGGATCTTGATGATCCTTCACGCCTGCAGAGGAGAGCACGGTATCTTTTAATCAAAATGAAGCTAGAGCAGAACCTTATCGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAGAGTCGAGAAAAGATTAGGCCAGAAAAGGAGCTACAACGAGCAAGGAAGCAAATTTTAAAATGTAGACTTGGTATTCGTGATGCCATTCGCCAATTGGATTCCCTTGGTTCATTGAGTTGCATTGAAGATTCGGCAATTGCTCCAGGTGGATCTGGTTGTCAGGAACATATATTCTGTGCTAAGTGCAAAATGCGTGAAGAACCTCCACATAATGATGTTATACGATGCTATGGTACATGCAAGCGTGCGTTTCACCAAAAATGTGTGGACCCTTCTTTAGACACTGAAAATGTTCCTCCTGGAGGGCAGGACTGGTTTTGTAATTTTTGTGAATGCAAGATGGAAATACTGGAAGCTATGAATGCTCATCTTGGAACTCACTTCTCCTTGCACAGTGCTTGGCAGGATGTATTCAAAGAAGAGGCTGCTATCCCTGATGGTGAGACTACATTACTGAATCCTGTAGAAGAATGGCCGTCAGATGATTCTGAAGATGATGATTATGACCCAGAGAGGAAAGAAGACAGCCACAATATCAACATGGAAGGAACTAATGATAGTGCGTCTGATGATTTAAGCAGTTCTACCAGTCTGTGTTATTCTGATGATGAACATTCTCCAGTACATGGTGTCAGTCATGAATATCTTTTTGCCAATACCAGCATAGATTCTGATGAGTCTGAGGACAAAGCCTGTGGGCGTAGGCAGCGAAAAGCTGTTGACTACAAGAAGCTTTATGATGAAATGTTTGGGAAGGAAGCTCCTGCATATGAACAATTGAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAAGCGAAGAGAAAAGGAGTGTGATGCTGTTGATTCTCTTATGACGTTGCATGAAAGTGAGAATATGCACCCCAATAATGAGCACAACAACATGACAAAAATAATTTCTTCAGGCACAAATATCAGAAGGCATTGTTTTAGGATTCCACGTGATTCAGTTGAGAAGCTTCGCCAAGTTTTTGCTGTGAATGAACTTCCTCCAAGATCTATTAGAGAGGATCTTTCAAAAGAGCTAGGACTTGACACTGAGAAGGTCAGCAAATGGTTCAAAAATGCACGTTACTTGGCGCTTAAAAGTAGAAAGCATCAAGCAGAAGGAGCAGCAAATCAACATAAGGGAATCACTTCCACAAAGAACTCCATATTACAAAATCAGGAGAAAACTGATCTTTTGAAACCAAAGACCTTGAAAATTACTACAAGTCATTCCCAGAAGGATGTTAAAAATGTCAGTGGAAGAAAGAAAATTAAGTTTTCTAGCAAGAAAAGACAACCAGAAATTCCTCCACCTCCTGGAGAAAATGGCAACAAGGACTCAATGGAGATGAGTGATGATGTGAGCTTGAAGAAACTATTGAAGAAAAAAAAGAAGAGGTTGGTAAATTTTACATTTGCAGGAGATTCTCAGACGGCAGAGTTGGAATTCGAAAGATTGTGCAAATTGAAGCAAAAACTAATTAGTATGAAGCAAAAATTAACAAGAATTCAAAGGTTGGATGCAAAGGGTTCAGATGAAGCCCATTGTAATGAAGCATCCATTGTATATGTACCCACAGCTGTGTTAAGGGAAAAAACTGAATGA


Promoter Sequence:
>Vu_07268::LG1:104025126-104027126(+)
TTAGCGGTGGTTCTCAACTAATTTTGTTGAATTATTGTAAAATATAAATAGTTGGTAGGATTATATACAAGTCAAATAGATACACAATTCTAATAGTCTTTTCAATACAATGGCAATTAAAATGTTTTATGTGAAAGTTAACATTAATATATACTAACTAATGTCTTGGATAGAATAGTTAAACTAAATCCACAAGTTTTAATAAATTAAATATATTTATTTTAATGAAGTAAATAGTTTAAATTATGAATTTTAAAAAAATAAAGAGATGAAAAATATAATTTAGATTATGATGTAAAATCGTGGTCCTTATTCTTGCACAACAGAATGACTTTTTAAGCAAATTTTGCCAAGTGTCACGCTGATGTTGATTAAAACAAATGTTTTTTTTTCTTTTACCACCATACTAGGAATGTTGGATTATTTGGATAGTGAACAAAATATTCGAATTTCATCCTATAATTCGTCTGCAAGTGCATTGGTGTAGTTGGTATTAGTTTTTCAATTAAAAGTCAAAAACTAATATGCTAAAACTATAAAGAATTTGACCTCTCCTAATTTATATTCTTTTTTATCATACGAGAAACAATATAATCAATCTTGTTATCACATGTTGTAGTAGGATACATCTAATACCGATATTTAAATTCGGGTAGTTATATTTTAACTATAGGTTTTGTTAATAGATAGAAGTTGGGATATAACCATGTTAGTTTTTTTCTACATTAGCATTGTTTTTAATCATTGGATTAATTGTAGGTTTATTAAACAGTATTAACTATAGAAATCAACATTGCATTGATTTAATTATAATGGTAGATATTCATTTTGAACTTTATAATAATTTATGATATACATGAGCTTATTATGAATTAATGAGTCGGCTGAAATTGAAATGGAGACTTTGCGAGGGACTAATTGTTAATGGAAAAAAATTGGAGAATAATATATCTATACTTGTATGTTTTTATAGATCAAAAGTATTACAATATAATAAACTATATTTAATGTAAATGTTATTATTTATTTATAGTATAAATGTAAATATTAAAACTGTTTAATCAACTTTTACTTAATATTTTATGGATTTTAGTATTTTATGTCACTCCTTAGTCACGAGAAAAATCTCTGAATAGATTTCATATTAATAAATGATGAATAAATTTATAGTATGATTATGATACTATTTTTATCTCAAAATTTTAAGAAAATTAGGTTGTAGGACTTTTTTCTTATTCAACTTTGCCATTTTTTCACAAATATCAGTTTTGAATAAGATTTTTGTTCTTAATGTTTAATACCATTATATTCATAACAAATATTAAAACTATTGGCTAAGTGAAAATAATATTAGATAAATATTCGGGAAGGAATTAAGCCTTTTATTCATAATATATTAAAATAAAATTATAAAGAATGGTTTATACTAAATCAAGATTTGTAAGATACAGATAGTAATGTTTTAAGAATGAAACGTTTGTTGTATTTAGTATATTTCAGAAAAGAAAAAAATCAAACACTTTTGGTTATGTTAAAGTAGCTTTTAAGAGATATTTTAGTAAACATCCAATGATTAATTGGCCTATACAAAAATAATATTAAATAAAAAAAAGTTTGTCACAAATAACGTTAAATATACCTAATTAACTAAAATTTGTTTGACAAAAATGATTTCACAACAAACATCTAGAATGGTATTCTCTTTATCATGAATGACATCGACTTCAAATTAATTGACAGCAACAACATGTTGTAAAAAACGAGAGAGATAAATGAAATAAAAACATTATTCAAAAAACATAAATAAAATCGAAATTGCTGTTGCCTACTTCCATTTTAATTTCGGTAACATTATTATGTACCAATTTGATTGATGCAAACATAGTCTGACAGTAAATTAAATCAGTAATTTCTTTCTGCTAAACTAAATCTATCAGGAGATCACAAAAAGATTCATGCTCTCATTGCATATAACCAAGCACTTTTGCTTCCTTTGTTCA


Gene Sequence:
>Vu_07268(+)
ATTGACGAGTTGAGACACATTGGCTACACACAAAAGGCAACAATGCCTATGATTCACCACAGAATCTGATTTTTTTTTTCTGAAGACTATATCAATATTATTTTGTTCCTCGTTTCAGATTCTGCCACAATTACTTGTGAAATAAAACCACACGCAAAGAGAGAAAAGAGAAAGAAAGAGAGACAGAGAGATTCATATAATGAATGGGAATGGCAACATAACAAGAAGCTAACCGTTGTGGCGCTTGGGGTAGCTATTGACGGCGACTGGTTTCATCAATCAACATTGGGAATCTGAGACCCAATTTCAAATTCAAACCAATCTCTCAATTAAACTCCACCCATTCAATCCCTGCAACTCCTGCACTGTCACCATGTTCACACCCTTTCAGGGCCTTACAAAGTTCTGATCTTTCACTATATTCCTCTTCCTTCACAGGTTGGTTTTGTTTCTTTTGCTTCAAACTCTTGTGGGGTTAGACATTTGGATTCAAAGTCAAGGTCTTGAGGCTCGTGGTGTATTGGCCGTTTTGAGTACTTGGGGTATTTCGTGTGTTCTTCTGCTTATCACAAGTGCTTTTTTTCTCTCGATTTGAATAACTAACGATGACTTATTTGTGATTCTAACAATCATGTCTCAAACATCGTATATTGACTTTCTTTATTTTGCTGAACTAGTCAAGTAATTCATGATTCAATGTTCTCTCGACGAGTAATACTCATACTCATCTAATGCTCCACTGTTTTTGCCCGTTTCATATAATGTTTGGCCTTGTTCCATCCTGCTTTGATTCAAGAATTTGATCAATTGTAATGCTCATTTTTTAACTTGATCAATGGATAGCGAGCAACTTAGTATGCATTAACAAGACCAATTTCTGTGAAATCGTTGTCTTTGTTTTCGCAAGATTCATGTTTTGTGCTGAAATTTCAGGATTTAACATATCAATATGCGGGACAGTGTGAAGAAGTCAAACGACAAAGGATCTAAAAAATCTGGTCATTTGAAGGCACGTACAAAAGGGAAGAAGGATAAAGTGAAAGTGGAATCAAAATCTCACACAAAAAATGTTGGCACTGACGTATCAAAGAAGAGAGTTATCTCTTCCCTCAAGATCAAAGGACCTCGTAAGGATTCTTCAGATAAGAAATTGACTACTGGACAGAAATTGCCTTTGAAGAACAGAAAATCTTCACAGAAGCCATCCTCAAAGTTACCAGGCAAAAAAGCTTCTCTTAGCTCTAGAAAAGAGGGGAAAGATGCTGATGGGGAGGTAAAGCTTCAAAAAATGAAGAGAAAGAGAACAAAGAAAAGACAAAGGAATAACTTGGATCTTGATGATCCTTCACGCCTGCAGAGGAGAGCACGGTATCTTTTAATCAAAATGAAGCTAGAGCAGAACCTTATCGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAGAGGTATGGTATAAGTTTTCCTATAGCTTTCTTTTTGTTGCAAAAGGTTGGGTGAATAACAAGCATATTTTACCTTTTAATTGATTTAGTTAGGAGGTGTTCCTTTTAATTGATTTTTGTTACTGTTATTCTTAGAGGTGCATGCTCTATGTCACTTGAAATATTTAGGAGATTAAATTATTCAAGGGAAATGTAAATAGATAAATGACTGGTTTATTGAGTTACACTTCCATTGAATTTGGTGATAGCTGGAGTTTTCACGTACCCACTTAAGCTGAATTTATGTTTTGCATGAAAAATTTAGTATGATTATGCTGTACCGTTGATTATAAACCAGAATGGATTGGTGTCTCCAAACATTCGTCTTGGTCAACAGCTTATGGCAATGCAGTGCGATCTTAATCTGAAAACAATTATTAGCTATTTTCATCAACGCTAGCCCTTGACAAATAGCAGTGTGGCTTATCATTATTCCATTTCTTGAACTGATGGAAACTCCTTTAACAGTCGAGAAAAGATTAGGCCAGAAAAGGAGCTACAACGAGCAAGGAAGCAAATTTTAAAATGTAGACTTGGTATTCGTGATGCCATTCGCCAATTGGATTCCCTTGGTTCATTGAGTTGCATTGAAGATTCGGCAATTGCTCCAGGTGGATCTGGTTGTCAGGAACATGTGAGCAAGTATCAACACTTCATTGCATTAAATGATTCTCTATTCTTTCCATTTAATACTTGTGAACCAGCTTCATACCTTCTCTTATTTTGCTAACGTTGAGCCATCTCTCATGCCTTTTCTGAAGTCAAGTTGTATCGTGTATCATGTATGGAATGACAAGGCACATTTTAAAAACTTTATATTCAGTCTTCTATTTTTCTCAATCTAGATATTCTGTGCTAAGTGCAAAATGCGTGAAGAACCTCCACATAATGATGTTATACGATGCTATGGTACATGCAAGCGTGCGTTTCACCAAAAATGTGTGGACCCTTCTTTAGACACTGAAAATGGTAAGTTCCATTATATGATAACAAGTTGTTCTTTTGGTTGCAACTTCCTCTGTTTTGATTTCATGAAATAAATCATTTGTTTAATTATATATTACAGTTCCTCCTGGAGGGCAGGACTGGTTTTGTAATTTTTGTGAATGCAAGATGGAAATACTGGAAGCTATGAATGCTCATCTTGGAACTCACTTCTCCTTGCACAGTGCTTGGCAGGTTTTTAATCTTATAATCTCTTAACACCATTTATTTTTCTGTTTTCATCTCTCTCTACATATATAATCAATTTAGAATTTTATGTACATACCAGACGAAAATGTACTCCCTTAAATTTTTTCTTTCATTGCTGTTTGTTAGACTTTCCTCTTAAAAAGTACTCGTCACTTTAAGGAATCCAAATCCATATATTCCTACTGGTTCACCTAATAATTCCTTTCTGGCATAATTAAAGGATGTATTCAAAGAAGAGGCTGCTATCCCTGATGGTGAGACTACATTACTGAATCCTGTAGAAGAATGGCCGTCAGATGATTCTGAAGATGATGATTATGACCCAGAGAGGAAAGAAGACAGCCACAATATCAACATGGAAGGAACTAATGATAGTGCGTCTGATGATTTAAGCAGTTCTACCAGTCTGTGTTATTCTGATGATGAACATTCTCCAGTACATGGTGTCAGTCATGAATATCTTTTTGCCAATACCAGCATAGATTCTGATGAGTCTGAGGACAAAGCCTGTGGGCGTAGGCAGCGAAAAGCTGTTGACTACAAGAAGCTTTATGATGTAAGTATATGAAGTTGTCCCTGATTTGTTTGCTGTCCTATAATGGTTTAGAAGTTTCATCTGAGTTCTTTTTTCTCAGGAAATGTTTGGGAAGGAAGCTCCTGCATATGAACAATTGAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAAGCGAAGAGAAAAGGAGTGTGATGCTGTTGATTCTCTTATGACGTTGCATGAAAGTGAGAATATGCACCCCAATAATGAGCACAACAACATGACAAAAATAATTTCTTCAGGCACAAATATCAGAAGGCATTGTTTTAGGATTCCACGTGATTCAGTTGAGGTACTAGCAGAAACACTTGGTCAATTTATTTATAAAAGGGTTATATGTGCTTTAATTTTTTCCCCTTTCATCTTATTATGAAATGAGCCAGAAGCTTCGCCAAGTTTTTGCTGTGAATGAACTTCCTCCAAGATCTATTAGAGAGGATCTTTCAAAAGAGCTAGGACTTGACACTGAGAAGGTGCCGACTTACTTTATATCTATCTTCCATTCGAATTTGCTTTTGAAGTTTTTTCTCTTGATGCACAATTTCTTGATCCCCTGTGGTTATTCCAATTAGTTCCACTCTGTTTGCATGCCTATAAACACTTTATTTGTTCAAACTTTCTGCTACTAACTTGTGCTAGAAAATGCAGGTCAGCAAATGGTTCAAAAATGCACGTTACTTGGCGCTTAAAAGTAGAAAGGTAAGACACACTTTAATATCTCATTGTTCAATCAATGCAAGTCTATTTTGTCTTCCTTTTGTTATAAACAATTCTTGCACTAGTAGCTCTTTTTATAACTCTCACAATCTTTACGGTAGTGTTTACATTTCATTTCTTTTGCTTATGAAATTGATTTTGAACAAATGTCAAGCTTTGTAATTTTAGATTAGTATAATTAAAATCATATAATAGGATTACTCAATGACTGAAAACAGAGAGAATTCTAGGAAATCATATGATGAAAATTCTTGTCTTAATGAGAAGACCAAGAGAGTAGTCTTAGCATTTTTTTTTGTAGATTTAGGACTTCCTTTTGTGTCAGACAGTCAAATTTTGTAGTCCTTTGGAATTTGCAATGAACTCTAATGTGATTGGATTTTGTTCAGCATCAAGCAGAAGGAGCAGCAAATCAACATAAGGGAATCACTTCCACAAAGAACTCCATATTACAAAATCAGGAGAAAACTGATCTTTTGAAACCAAAGACCTTGAAAATTACTACAAGTCATTCCCAGAAGGATGTTAAAAATGTCAGTGGAAGAAAGAAAATTAAGTTTTCTAGCAAGAAAAGACAACCAGAAATTCCTCCACCTCCTGGAGAAAATGGCAACAAGGTGCTTTTCTAATAGTTTCATGTTTTAAAGCATTGTATGTTTGAGAAGTGGTAACACATCCATAAACCAGGCAAATCAGAGTTTCAAATAGAGCATTTTTTTTTTCTTACGATTACTTGAAGAAAGGATGCACTGGTAATTCTATAACAAGTTTTCACTGCTTTTTCCCCTTCAGGACTCAATGGAGATGAGTGATGATGTGAGCTTGAAGAAACTATTGAAGAAAAAAAAGAAGAGGTTGGTAAATTTTACATTTGCAGGAGATTCTCAGACGGCAGAGTTGGAATTCGAAAGATTGTGCAAATTGAAGCAAAAACTAATTAGTATGAAGCAAAAATTAACAAGAATTCAAAGGTTGGATGCAAAGGGTTCAGATGAAGCCCATTGTAATGAAGCATCCATTGTATATGTACCCACAGCTGTGTTAAGGGAAAAAACTGAATGATAACTTTTATTGGAAAATTTATGAAAGCAGTTAATTCCTTTCTCCTTG