Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_07185 LG1 103104982 103106739 PREDICTED: zinc finger protein CONSTANS-LIKE 5
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of flower development, regulation of flower development, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of flower development, regulation of flower development, regulation of flower development
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus
Molecular Function   enables   DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, zinc ion binding
SNP Position Effect Amino acid change
A/G 103105034 3_prime_UTR_variant
G/T 103105042 3_prime_UTR_variant
C/T 103105102 3_prime_UTR_variant
C/A 103105119 3_prime_UTR_variant
G/A 103105137 3_prime_UTR_variant
A/G 103105187 3_prime_UTR_variant
T/A 103105223 3_prime_UTR_variant
T/A 103105251 3_prime_UTR_variant
T/A 103105310 3_prime_UTR_variant
A/T 103105311 3_prime_UTR_variant
C/T 103105376 3_prime_UTR_variant
G/A 103105431 missense_variant p.Pro365Leu
G/C 103105432 missense_variant p.Pro365Ala
T/G 103105670 synonymous_variant p.Gly285Gly
T/C 103105694 synonymous_variant p.Glu277Glu
G/A 103105703 synonymous_variant p.Asn274Asn
C/T 103105706 synonymous_variant p.Arg273Arg
C/T 103105707 missense_variant p.Arg273Gln
G/A 103105708 missense_variant p.Arg273Trp
A/T 103105713 missense_variant p.Phe271Tyr
G/C 103105736 synonymous_variant p.Thr263Thr
C/T 103105747 missense_variant p.Asp260Asn
A/C 103105760 synonymous_variant p.Val255Val
C/T 103105769 synonymous_variant p.Ser252Ser
C/T 103105790 splice_region_variant&intron_variant
G/C 103105807 intron_variant
G/A 103105860 intron_variant
A/G 103105862 intron_variant
T/C 103105866 intron_variant
T/C 103105884 missense_variant p.Ser245Gly
A/G 103105885 synonymous_variant p.Leu244Leu
G/T 103105912 synonymous_variant p.Ser235Ser
T/C 103105920 missense_variant p.Lys233Glu
G/A 103105948 synonymous_variant p.Ser223Ser
C/T 103105974 missense_variant p.Val215Ile
A/G 103105988 missense_variant p.Leu210Pro
G/A 103106023 synonymous_variant p.Asn198Asn
A/T 103106055 missense_variant p.Ser188Thr
G/A 103106065 synonymous_variant p.Asp184Asp
T/A 103106086 synonymous_variant p.Ser177Ser
C/G 103106113 missense_variant p.Glu168Asp
T/C 103106127 missense_variant p.Met164Val
G/A 103106128 synonymous_variant p.Phe163Phe
G/A 103106140 synonymous_variant p.Phe159Phe
A/G 103106170 synonymous_variant p.Ala149Ala
G/A 103106171 missense_variant p.Ala149Val
T/G 103106174 missense_variant p.Asp148Ala
A/G 103106191 synonymous_variant p.Phe142Phe
C/A,G 103106200 synonymous_variant p.Ser139Ser
G/A 103106212 synonymous_variant p.Ala135Ala
G/A 103106225 missense_variant p.Pro131Leu
G/A 103106255 missense_variant p.Ser121Phe
A/T 103106286 missense_variant p.Phe111Ile

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_07185.1
MGIEKGGLKGFRSGWTVPPKPCDSCKLASAALFCRPDSAFLCIACDSKIHCANKLASRHERVWMCEVCEQAPAAVTCKADAAALCITCDSDIHSANPLARRHDRVPVEPFFDSAESIVKASAAASFGFIVPSDDATAASDAFAPDDPDAAAWLIPNPNFGSKFMDAPEIKSKEIFYSEMDPFLDFDYSNSFHNNNSGNDSVVPVQTKPSLAPSLVNNHQQSESCFDIDFCRTKLSSFNYPSQSLSQSVSSSSLDVGVVPDGNTVSEMSYSFGRNSSESSGIGLSGVSGGQGATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRAEIDSDVERLYSPGAASLMLDSPYGVVPSF*


CDS Sequence:
>Vu_07185.1
ATGGGAATTGAAAAAGGAGGCTTGAAGGGGTTCAGGAGCGGCTGGACCGTGCCGCCAAAGCCATGTGACTCCTGCAAGTTGGCTTCGGCGGCGCTTTTCTGCCGTCCCGATTCCGCTTTTCTCTGCATCGCCTGCGACTCCAAGATTCACTGCGCCAACAAGCTGGCGTCGCGCCACGAGCGCGTCTGGATGTGCGAGGTCTGCGAGCAGGCACCCGCGGCTGTCACGTGCAAGGCTGACGCCGCCGCCCTCTGCATCACGTGTGACTCCGACATCCACTCTGCCAACCCCCTCGCGCGCCGCCACGACCGCGTCCCCGTTGAGCCTTTCTTCGACTCTGCCGAATCCATCGTCAAGGCCTCCGCCGCCGCCTCCTTCGGCTTCATCGTCCCCTCCGACGACGCCACCGCTGCTTCGGATGCCTTTGCACCCGACGACCCCGACGCTGCCGCCTGGCTCATCCCTAACCCCAATTTCGGGTCGAAATTCATGGACGCCCCTGAGATCAAGTCCAAGGAGATCTTCTACTCAGAAATGGACCCCTTCCTCGACTTCGATTACTCAAACTCCTTCCACAACAACAACTCCGGAAACGACAGTGTCGTTCCAGTTCAAACCAAACCTTCCCTCGCTCCTTCCCTCGTCAATAACCACCAACAATCAGAAAGCTGTTTCGACATCGATTTTTGCCGCACCAAACTCTCCTCCTTTAATTACCCATCCCAGTCTCTTAGCCAAAGCGTTTCGTCGTCATCGCTTGATGTTGGAGTGGTGCCGGACGGGAACACCGTGTCGGAGATGTCGTACTCGTTTGGTCGGAACAGTTCGGAATCGAGTGGGATTGGTTTGTCAGGAGTAAGTGGAGGGCAAGGGGCGACGCAGTTGTGTGGGATGGATCGTGAAGCGAGGGTGCTGCGATACAGAGAGAAGAGGAAGAACCGAAAGTTCGAGAAAACCATTCGATACGCATCGCGGAAGGCTTATGCGGAAACCCGACCCAGGATAAAAGGGCGGTTCGCGAAGCGAGCAGAAATTGACTCTGATGTGGAGCGTCTCTACAGTCCAGGCGCTGCGTCGCTGATGCTGGACAGTCCATACGGCGTGGTACCGTCGTTTTAG


Promoter Sequence:
>Vu_07185::LG1:103106739-103108739(-)
TAATAACATTAATTTACAGTATATATATTTTGATAGTCATTGATTTTATAGATCATTCAAACTTTTCTTCCAAATTTTAATTGTAAATGTTAACTTTTTTTCTCTCCTAAGCGAAATACTCAAGTTTGTTAGGTCAACTTTATCTTCACTCATAAAAGCAATAAATTGTACATATAGCACAAGATGTGGATTATGATTGGCTAAAGGGATTGTGGTGGAAAAAAAATTATTGTAGGACATGAAATATATGTCCTCACTTTAGGTTAGAAGAAGTTGAACTGGAATAATTAAATGCGTGTTAACTTTTTATTGATGATTATTTCAATATGATATTTGAATATCGAAGGTGATGATGCTTTTAATTGATGGTTGGCGTTTTCAATTATATGTGGAGAAAATAATAACATTGGAGTTTTGAGAATTGATCAATTAGACATGTATTGGGGAGCAAGGAAATTATGTAATCGTTGCACGATATTGGCATGATAAAAAAAACATGCTTGTGTTGGTATGATGTTGTCTTTATATGAACATCTTGATCGACTTGTAGGGTACATAACCCTCCAGATTTAAACTCTAAGGACACATAGACTTCAATAATGTCATACAATTCACTATTACTTAATAATATCCACATTTGAGCAGGTGATTAGTCTTTTTTTGTTTTATATTTTATTTTTTCTAAATTAATATTTTAAAGGCATCGGTTAACAACTTCACCAATACACATAATTTATATCCGATTTTTGCGAACCACTTCGCTTAAAATAAGTGTTTAATTATGGAGAACATTCCATTCCTATTTCTATATAGAAGTAAAGGCCGCATCTTAGGTTAATGTTTGACTACTACATTGTTTCTCGATTCTTTACGGTTTCGAAAGCAAGTTTTCATAATTCACATGAGATGAATACATATATAATGGGCGATTGTCTGTTTCCAAATCTCAAAACATTTTATTTCTATAATAGAGTCTAAAAGTGTCACTTCAAAATTCTGTCAATAATCGTATGAAAGTGTAAGCCACAAATTAAAATACTTCAAGTAATTAGCATATCAAATATCTGTAGGAGATGGTTCGAAGTTTACAACTCGACGAAATATTTTTCATTTGGTACAATATGAGCCACCAATTAATATCTATTAGTAGTAAATTAGCATCAATTTAGAAGAAATTTGATATATAACATACCAAACAAAATACCAATTAAGTCAATACCTTAAAATTGTTCCATTTTCTCTCTCATATATCTTGTTTTACCCACGTGGGTTTGCTGTTGGCTATTTGTGCCAACTTTAACATGTCTCCCCTTCCCAATTGTGTCTTCTGATATTTCGATGGTTGGATATGAGGCTCTCATTAACGATGGAAGGGCAAACATATTATATGTGTTTACAGATTTTACTTTCCATACATTTATCATGAAATAAATATGAATATTTTATATCATTAAAATGATTATGGAAAAATAGCAATATCATACACATTAAATTATGATAAAATAAAAAATAAATTAAACTTTTATATTGTAAAATAATTCCACAGAGTTATTTAATCATTAATTACCATACATGACAAATTTGTATTATCTTAAAAAATTATATTGTTAACATATTCTATTAATCGATGATGTAAAAGTAGTCAAAATTATGTTTTAAATTATAAATAGAATAATATTTATCATAAGAGGAGGGTTGCTTGAAAAAGAAAATTATCCTCTTGACTCCGTTGCGTTGTTTTAGTAAGAAATAAAAATGTTAAAAAAGCATAGTGATTGCATCTAATGTCCGTGACGGGCCCACGTCGGCACAGACACAACACGATGACAACTACTACTCCGCAATACATATCTATTCTAATATTGTTGGTCTGAGCGAACCATTTATGTGGCCAAGAGTGAACCACGTGTCCCTCATTGATTCGTCATCACCTAGATTTCCTCTCTGCGACCAGTGAGTAATATAGATAATAGAAAAACCGCACCCAAAGAAATCAACTT


Gene Sequence:
>Vu_07185(-)
ACACACTCGTCTCCACGTTTAGGTCGCTCTAACTCTATTCCATTCCACTCCTCGTTGGGAATTGAAAGAGTAGTACCGTTAGATTAGCCGCGTTTTTCAAAACTGTTTCTTTCTGTTCAGACCATGGGAATTGAAAAAGGAGGCTTGAAGGGGTTCAGGAGCGGCTGGACCGTGCCGCCAAAGCCATGTGACTCCTGCAAGTTGGCTTCGGCGGCGCTTTTCTGCCGTCCCGATTCCGCTTTTCTCTGCATCGCCTGCGACTCCAAGATTCACTGCGCCAACAAGCTGGCGTCGCGCCACGAGCGCGTCTGGATGTGCGAGGTCTGCGAGCAGGCACCCGCGGCTGTCACGTGCAAGGCTGACGCCGCCGCCCTCTGCATCACGTGTGACTCCGACATCCACTCTGCCAACCCCCTCGCGCGCCGCCACGACCGCGTCCCCGTTGAGCCTTTCTTCGACTCTGCCGAATCCATCGTCAAGGCCTCCGCCGCCGCCTCCTTCGGCTTCATCGTCCCCTCCGACGACGCCACCGCTGCTTCGGATGCCTTTGCACCCGACGACCCCGACGCTGCCGCCTGGCTCATCCCTAACCCCAATTTCGGGTCGAAATTCATGGACGCCCCTGAGATCAAGTCCAAGGAGATCTTCTACTCAGAAATGGACCCCTTCCTCGACTTCGATTACTCAAACTCCTTCCACAACAACAACTCCGGAAACGACAGTGTCGTTCCAGTTCAAACCAAACCTTCCCTCGCTCCTTCCCTCGTCAATAACCACCAACAATCAGAAAGCTGTTTCGACATCGATTTTTGCCGCACCAAACTCTCCTCCTTTAATTACCCATCCCAGTCTCTTAGCCAAAGCGTGAGTACTACCATCCAGTAACAAATTTGAAATATTATGTATAAATTTTTGGTCTTCCAGTGAATTGACTGGAGAATTGAATTATGTAACAGGTTTCGTCGTCATCGCTTGATGTTGGAGTGGTGCCGGACGGGAACACCGTGTCGGAGATGTCGTACTCGTTTGGTCGGAACAGTTCGGAATCGAGTGGGATTGGTTTGTCAGGAGTAAGTGGAGGGCAAGGGGCGACGCAGTTGTGTGGGATGGATCGTGAAGCGAGGGTGCTGCGATACAGAGAGAAGAGGAAGAACCGAAAGTTCGAGAAAACCATTCGATACGCATCGCGGAAGGCTTATGCGGAAACCCGACCCAGGATAAAAGGGCGGTTCGCGAAGCGAGCAGAAATTGACTCTGATGTGGAGCGTCTCTACAGTCCAGGCGCTGCGTCGCTGATGCTGGACAGTCCATACGGCGTGGTACCGTCGTTTTAGTTAGTGGTATAAAAGAGGAAACGATGACGGGATGGTGCATGAATCTAGTGTTGGGAAATCTTAGAATAATGATTAGTGATTCTGTGGGATTGATTATTAGGGAAAAAGGTGAAGAATCGATACGAACGTGATTCTTACCTGGAACGCCACGGGGAAGGTTGTTTCATTAGGATGGAGGAGAAAAGCCCGTTTACTTTTTTTTTTTTTGCTAAAGAACTTTAAAGGGGCTGCATCTTCATCTTCACCTCGTGTAGAATTAGAATCTGTACTGTAAACTCTTTTCACTGCCTTACCTTCCCTGCTGTCTTTTTTTTAGTATAAAAAAGTCTCTTTTCTCTATCACCCTGATCACGGATCTCTTTCCCCCTTCCTATTGGCTGCCATTTCCAACTATATATATAAATCACTTCTTTATTTCACTGTC