Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_07144 LG1 102575157 102577516 PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
Map

Annotations  
category   relationship type   keyword
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
C/T 102575235 missense_variant p.Pro27Ser
A/C 102575241 missense_variant p.Thr29Pro
C/A 102575242 missense_variant p.Thr29Asn
C/T 102575245 missense_variant p.Pro30Leu
G/T,A 102575571 synonymous_variant p.Gly88Gly
A/G 102575582 missense_variant p.Tyr92Cys
C/G,* 102575625 upstream_gene_variant
A/T 102575626 upstream_gene_variant
T/A 102576010 upstream_gene_variant
T/G 102576108 upstream_gene_variant
G/A 102576111 upstream_gene_variant
G/C 102576139 upstream_gene_variant
T/C 102576174 upstream_gene_variant
G/T 102576436 upstream_gene_variant
C/G 102576695 upstream_gene_variant
A/G 102576702 upstream_gene_variant
A/G 102576751 intron_variant
C/T 102577081 missense_variant p.His235Tyr
G/A 102577306 missense_variant p.Val310Ile
G/C 102577348 missense_variant p.Asp324His
T/C 102577390 missense_variant p.Ser338Pro
G/T 102577435 stop_gained p.Gly353*
G/A 102577486 missense_variant p.Val370Ile
C/A 102577493 missense_variant p.Pro372Gln

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_07144.1
MRPTLPIILMQPTLSPPRSNEQGEVSPETPLLNAAPYTEESLGTDGLVATKLIYGTSIAGMKHRTKKDDKLADVFNVIYFHAVFSILWGFFTYVTTSVYLGAYDNEVAAAHAYDLAALKYWGQDTILNFPLSNYLNELKEMEGQSREEYIGSLRRKSSGFSRGISKYRGVARHHHNGRWEARIGKVFGNKYLYLGTYATQEEAATAYDLAAIEYRGLNAVTNFDLSRYIKWLKPNNNTNNNDQISINLNDMNNNCTSSNFTPNPDQEQEQELSFLHNQDSVNTVVEEATSVTHQPRASGATSALELLLQSSKFKEMMEMTSVANMSTQMESELPQCAFPDHIQTYFEYEDSNRYEEVDDLMFKFNEFSSIVPFYHCDEFQS*


CDS Sequence:
>Vu_07144.1
ATGCGACCAACATTGCCAATAATCTTAATGCAACCAACACTGTCCCCACCAAGGTCAAACGAACAAGGAGAAGTGTCCCCAGAGACTCCCCTCCTCAACGCAGCTCCATATACCGAGGAGTCACTAGGCACCGATGGACTGGTCGCTACGAAGCTCATTTATGGGACAAGCATTGCTGGAATGAAACACAGAACAAAAAAGGACGACAAGTTGGCTGATGTTTTTAATGTGATTTACTTCCATGCGGTGTTCTCAATCTTGTGGGGGTTCTTCACATACGTAACCACCTCAGTTTACCTTGGTGCTTATGACAATGAAGTGGCAGCAGCACATGCTTATGATCTAGCTGCACTAAAATACTGGGGTCAAGATACCATTCTTAATTTTCCGTTATCAAACTATCTGAACGAACTGAAAGAAATGGAGGGTCAATCACGGGAGGAGTATATTGGATCTCTGAGGAGGAAAAGCAGTGGTTTCTCTCGAGGGATTTCTAAATACAGAGGGGTTGCAAGACATCATCACAATGGACGGTGGGAGGCTCGGATTGGCAAAGTTTTTGGCAATAAATATCTTTATCTGGGAACTTACGCTACCCAAGAAGAAGCTGCTACGGCCTATGACCTGGCAGCTATAGAATACCGTGGACTCAATGCTGTCACCAATTTCGATCTCAGCCGTTACATCAAGTGGCTTAAGCCTAATAACAACACCAACAATAATGACCAGATTAGCATTAATCTCAATGACATGAATAACAATTGCACCAGCAGCAACTTCACCCCAAACCCTGATCAAGAACAAGAGCAAGAACTAAGCTTCCTCCACAACCAGGATTCAGTGAATACTGTTGTAGAAGAAGCCACATCGGTGACACATCAGCCCCGTGCATCAGGTGCCACGTCAGCATTGGAGCTTCTGCTTCAGTCATCAAAGTTCAAGGAAATGATGGAGATGACATCTGTGGCCAATATGTCGACACAGATGGAGTCTGAGTTGCCACAGTGTGCGTTTCCTGATCACATTCAAACGTACTTTGAGTATGAAGATTCCAACAGATATGAGGAAGTGGATGATCTCATGTTCAAGTTCAACGAGTTCAGCTCCATTGTGCCGTTTTACCACTGTGACGAGTTCCAGAGTTGA


Promoter Sequence:
>Vu_07144::LG1:102573157-102575157(+)
TTTTATTTAATATAAGATATTTAACACACTTCCATCTCCTCCATCTCCTCAATGGTTTTGCTTTCTAAAGACAAAGTCAATTATAATTGTATTAAATTTCTGATTTTTTTTCTTAATTCTATTATGTATATTTTAGTAGGTTCATTAGGAAACTTCTTACTTATTTTAATAATATTACATCGAAATCTCTTATAAAAGTGCATACACTTTTATTAATTGTTAAAAGGTATGAAAGTTTGCACGTGATCATTGATAAGAAAACAAAATCTAAATAAAAATATCTTAGAATATTAGAGATTAATTTATTCAATTACTTTATCTCCACTGTCTGATTATATATAAATATGTAAGCAATTTCTTATCAATATTTATATTAATTTAATTTTCATTAAAAAAAACACAGAAAAGTATAAGAAACAGAAATGATAAAACAAAAACAGAATCTTTCGAAACAAATAAAATTGAAACTCCTTTAATTTTTTTCCTTCAAACTTAATATATCTGAAAATTATGAAATGAAGTTAGAATATTGAGAAAAGAAAAATGAAGATGGGTAAAAATTATAGGGTGCAACAGAGGAAAGAAGAAGAGAGTGAAAAAGGGGTTGTTTGGTATATTAGGTGTAATTTAGGTGAGTCTAAGTGAGTGGAAGTGAGAGTGAGTGTTTGAAAATGAGCTACGGTTTGCTTACCAAATTTCTACTAAACAGCGATGCATGACTAATCAATGCACATCTTTTTTTGGGTGGTAAAACGCAAATGTGGTTTTCTCATTTAACAATTCAGAGTGCAATATGCATGCCACTCCATCTACCTCTCTTTCTCTCCATCCACTATAAGAACCAAATACTACTTACTTCAACCATGATCTAATTCTTAGGCCCCTACCACAAACATTAAAGTTTGAAAAAAAGCACGAATTTTCAGAAAATGGTGGAAAAGAGGAACACCCCAAACCCAAAAACTGCATCACCCTTTTAATCCATCACATGGGGTAGTTACACCTACATTGTAACATGGGGCAACTGCTCTCTGTTAAATTCCATGTCTAAGGAGACAACATTAGGTAACTTAGTATTATATTATACATTTCATATTTCTCTTTCGAAAAAACTTGAAGTAAATGGTTCAACCACATGTGCTATTGTGTTGATAATTAGGTCTAACAACGCATGTTTGTATGCTCCAAAATCACCCTCTTTGGTTAAGCTGTGCATATTCAACCGGCTAATGACTTTAAACATATATAACACCATGTCATGATTCTTTTTGTTTGCACCACTTGTACCATTTGACAACTCAAATTTAGAAATATTTTAGTTATTAAAAAAATTAGCTTTTGTAAAAAGAAATTAAAGAATAAAATAGTAAATATAAAATGTGTGTAAAAATTTGTTGGATAAATTTTAATAGATATCATGCATGTTTATAAGTAAGAAATTAAACCCATATTTAGGATTCATATATCATCATTTTAAAAAAGTATTGTAAGCTAGATTTATATATACCTAAATAAAAGATGAGAAGAGAAGGAAGGTGATGATAGAGAATGAAGATAGGTAGAAAAGAAAGGAAAAAGTTAGTATAATATTAAGAAATAAAAGAGATATGAAAACGTATTGAAAAGTACATGACATGCAGAAAGTGAGAATGAAGACAAGAGGGAAAGAATTTAACATAGAGCCGATTTTACAGACGGCCAGAAACATCCATGTTTGAGCCGGCTCTCCCCATCTTTGCCAGCACAATCTATTCTAACCCATCCTTTACCCCATTCCTTTATAAACAAACCCTCTTCACTTCAAATCACTACTTATATATATTTCATATTCATACATTTCTATATATATATATACAAGAAAAAAAAACTTATTTTTTCTAATGAACCATTAATATCATCAACATCCATCCATCTATATCTTATTCTTCTTTTCTCTTGCATGGTGCAACCTTTTCCATGGCCAAAAGATCACACTCACAGCTTCGAACCCAGAAAAACAA


Gene Sequence:
>Vu_07144(+)
ATGCGACCAACATTGCCAATAATCTTAATGCAACCAACACTGTCCCCACCAAGGTCAAACGAACAAGGAGAAGTGTCCCCAGAGACTCCCCTCCTCAACGCAGCTCCATATACCGAGGAGTCACTAGGTTAATACATGTTCTTCTATCTCAACTTGTTCAATTCCAATCATTTTACGTATCATTAGCTAATTTCATTTAATGGGTGTTCATCTCCAGGCACCGATGGACTGGTCGCTACGAAGCTCATTTATGGGACAAGCATTGCTGGAATGAAACACAGAACAAAAAAGGACGACAAGGTTTCATGCTCTTTAAATACTTACATATGTATATGTGCAGTTTTAATGTTTGATGAAGTTGGCTGATGTTTTTAATGTGATTTACTTCCATGCGGTGTTCTCAATCTTGTGGGGGTTCTTCACATACGTAACCACCTCAGTTTACCTTGGTACGTGTATTAGATTATACATTGATTAAAGAATCAGCATGTTCGGTTACATGGATATTAAGAAATTGGTTCTGTAATTCAGGTGCTTATGACAATGAAGTGGCAGCAGCACATGCTTATGATCTAGCTGCACTAAAATACTGGGGTCAAGATACCATTCTTAATTTTCCGGTACTTAATTATATTCTAATTAATCTATGTTCTGTGGTTTTTCACATTACATATATGTATGCATGGTTCGTGTGGATTAATTTAGAACAAAACAAACTAAATTTGTGTTTCATTTGCAGTTATCAAACTATCTGAACGAACTGAAAGAAATGGAGGGTCAATCACGGGAGGAGTATATTGGATCTCTGAGGAGGTAAAAACATGATTTTGCAGAAAAAACTATTCCTTACATATGCAGAAGAACTTATTCAATATTAAACCGCAGGAAAAGCAGTGGTTTCTCTCGAGGGATTTCTAAATACAGAGGGGTTGCAAGGTATACTTATTATATTAAGCATTAATGTTTCATATTTACTCTTGGAGATCAACCATGCGTCTGTGGTAGTGATCATCTTAATTATAGTTAATAATATTTTCGTGACTTTTCTTATGATCAGACATCATCACAATGGACGGTGGGAGGCTCGGATTGGCAAAGTTTTTGGCAATAAATATCTTTATCTGGGAACTTACGGTAAGAAAATACTACAATATCATTAGTACGTAATTAATACACGAAAATGCTTTGGATCTTTACGTAACTACCTTGTTGTTGTTCTCTAGTATTTGCTATTATATGTGCAGTGGGAACACTTAATTAGTGAACATTGGATAACTTTGGATTTTATATATATCTTATTAAAAATCATTAAAGTTTAATCTTAGTAATTATCATTATAAATATTTAACGTCTGACATCTCAAAGATGAAGCTTTTATTTTCATTTTTGTCAACAAGTGCCACAGCTATAACTCTACAAGTGATCAATCCTTGCATAAAATTATCACCATTTGAAACTTAAATCAGTTTTGTAAATCAAAACCATCCAGAAGTAAAGTACTGCTTGAATAAATCTGTTTGGTCCATCACATTCAATTCCGTTATTATTTAATTAATTAGCTTATTCTCACGCCATGGGTTTGCATGGGTCATGTATGGCGAATTTATCAGCAGTATTCAATGGGGGCAGGCAGAAAAGCCACCAACTCTTAACTGATTTGTTAACTTAACCTTTTCCTGCTACGCACTATACAATAACATGTCATTATCGTTATAATAAACAAAGTTTAAATTGATTATATGATATCAATCATTATAAAAATCTTAAATCTGTCATCTGTTTAATTTATGTATATAATTATCACAGCTACCCAAGAAGAAGCTGCTACGGCCTATGACCTGGCAGCTATAGAATACCGTGGACTCAATGCTGTCACCAATTTCGATCTCAGCCGTTACATCAAGTGGCTTAAGCCTAATAACAACACCAACAATAATGACCAGATTAGCATTAATCTCAATGACATGAATAACAATTGCACCAGCAGCAACTTCACCCCAAACCCTGATCAAGAACAAGAGCAAGAACTAAGCTTCCTCCACAACCAGGATTCAGTGAATACTGTTGTAGAAGAAGCCACATCGGTGACACATCAGCCCCGTGCATCAGGTGCCACGTCAGCATTGGAGCTTCTGCTTCAGTCATCAAAGTTCAAGGAAATGATGGAGATGACATCTGTGGCCAATATGTCGACACAGATGGAGTCTGAGTTGCCACAGTGTGCGTTTCCTGATCACATTCAAACGTACTTTGAGTATGAAGATTCCAACAGATATGAGGAAGTGGATGATCTCATGTTCAAGTTCAACGAGTTCAGCTCCATTGTGCCGTTTTACCACTGTGACGAGTTCCAGAGTTGA