Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_07135	LG1	102479435	102482475	putative leucine-rich repeat receptor serine/threonine-protein kinase	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	protein phosphorylation, defense response to other organism, regulation of cellular ketone metabolic process, response to chitin, defense response to other organism, protein phosphorylation, regulation of cellular ketone metabolic process, defense response to other organism, protein phosphorylation, response to jasmonic acid, signal transduction, response to jasmonic acid
Cellular Component	located in	plasma membrane, plasma membrane
Molecular Function	enables	protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein binding, protein kinase activity, protein serine/threonine kinase activity, protein kinase activity, protein kinase activity

SNP	Position	Effect	Amino acid change
T/C	102479441	missense_variant	p.Asn638Ser
G/T	102479482	synonymous_variant	p.Thr624Thr
T/A	102479605	synonymous_variant	p.Thr583Thr
G/C	102479890	intron_variant
A/T	102479984	intron_variant
T/A	102479995	intron_variant
T/C	102480014	intron_variant
C/T	102480202	intron_variant
T/A	102480571	missense_variant	p.Arg529Trp
T/A	102480778	stop_gained	p.Lys460*
G/A	102480928	missense_variant	p.Pro410Ser
G/T	102481282	intron_variant
T/G	102481644	missense_variant	p.Asn278His
A/C	102481797	missense_variant	p.Leu227Val
C/T	102481805	stop_gained	p.Trp224*
T/G	102481942	synonymous_variant	p.Leu178Leu
C/G	102482071	missense_variant	p.Glu135Asp
C/T	102482107	synonymous_variant	p.Arg123Arg
A/T	102482451	missense_variant	p.Phe9Ile

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_07135.1

MGLFRLAVFLFFCLDTVHSTVLGKENAGIVNGKKSLISFMSGIVSDPQNALDSWKSPGVHVCDWSGVRCNNASDMIVEVDLSGRSLGGTISPALANISSLQILDLSGNFLVGRIPKEIGHLVRLRQLSLSGNFLEDHIPSEFGSLHNLDYLNLGSNHLEGEIPSSLFCNRTSLGYVDLSNNSLGGQIPLNKGCILKELKFLLLWSNKLVGKVPLALSNSTKLKWLDLGLNMLSGELPSEIVSNWPQLQFLYLSYNNFTSHDGNTNLEPFFASLVNLSNFQELELAGNNLGGKLPHSIGDLPTSLQQLHLEKNLIYGSIPPHISNLVNLNFLKLSKVAALSSLKLYLNLSNNNLHGSIPLKLSKMDMVLAIDLSMNNLSGSIPPQLESCIALEYLNLSGNSFEGPLPYSLGQLLYIRALDVSSNQLTGAIPQSVQLSPSLKELNFSFNRFSGKVSNKGAFSNLTIDSFLGNGGLCGPFKGMQQCHKKCSYHLVFLLIPVSLFGTPFLCILFRYPIVMKSRVKKRFATVSRGDFEDVEEGAKEVNHEGSSLSEWLKKLYTQPHHLQSFVQQTLQRCYPFGLPNPHNKVWKDVILELIELGLICTQHNPSTRPSMHDIAQEMERLKDYLTKSTFTRHSSQSQH*

CDS Sequence:
>Vu_07135.1

Promoter Sequence:
>Vu_07135::LG1:102482475-102484475(-)

TATTTCTTAGCTTTTGCACTGTATTACAAATATCTTGTAATATTTATAAGGAAAAATTTTCAAATACGTCTCTCGATTTCATATCCTTCTTAATATCTAATAAAAAATGTTTATTCTTTTACTTTTGTTATCGATTTATTTTAAATTATTTTATATTTTGAAGTAAAGTTATTATTTTGTCAGTGTTTAAAAGAAAACGGGATGTTTATGTATTACTACCCATTAATATATTGTTTAAATTTATTTTTGTAGTATTTGAAAATTTTTACATTTCATCCAATTCATATTTTTATAATATTTATCACTCCATCTAGTTAAGCTTAATTCTTACTTTTTCTTTTTGATTTTCTCGCCTATTAGCTTTGTTTTTTTAAGTTCATTACACCATTTTTAAACAATAGGAAGAAGTTTTACACTAAAATGTTACGAAACATGAATTTTTATAACTCTTTATTTGTATTTTTTTAACATAAAAAATTAATTAATTAGTGTAATATTTAATTAGTAATTTAGTTTTTATGTTTAAGCTTAATTTTTTTTTGTCATTATATTTAATTTTTACTAAATTGAATAATCCTAATATTAGTTAAATAATATTAATATGTTAATTTTTTGTTTAAAAAATAGTATATCAATTTAATGAAATATTAAATTAATAGTTTGATTACGATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGATTAATTTTTGTAATATTTTCTAAATAGAAAATTCATCTCTTATATTAACATTGTATTGTTAAGAAGGGACTACGGATAAGTTCAAACATTTTCTTGCTCTCCAATCTCTTTTTCTCTAGCAATACAATCTCATTGAGATCATCTTTTTCAAATCAAATATCTTCTTTCATATCCTAAACTACAAATTCAAGATTATTAAAGATGAACACATGAAATTATTTGTGACTTTTGAGTTTCTTCCTAAAACCATCAGATGATGATGTTGTTGAAAAAAGAACCTCGTTATTTTCATGTAAACAATATAGGAACTTATCTGAATGAGAAGAAAAATATATGACTAAATTATTAATTAAATATTCGATTAATAAACAATATAGGAGTTCATCTGAATGGGAAGAAAAATATATAATTAAATTATTAATTATATTTTATTAAGTTAATAAGTGATTGCCTTAATACAAAGAAAAGTTAACATTGACTCAATTTAAAATATTTAAAGTCTAAATTAAGTTAACAACAAAAATACAAATTAAAATAAATCACAAATATAAATCTAAATATAAGTAATAAATTACTAATTAACGGATTATTATAATTAAATGTTTTAAAGAAATATTATTAACATGAGGAGTGGAGAGAGGCAAGTCGCCGCGTCCCGCCGCCTTAATTGGCATTGCCATGGGAACTCTTGAACGGTTACAAGAAACAAAGAAATAATTCTGAAATCGAAAGACGTATGAATGTATAAGTGCAACCCAGAAACAGCAGAATCAACATTGTCAGCACAGTCCCCACATGGCGTGCTATTAACCTAGCTTATCCTTTTAAACAGCACATAATCCACTACTTCAACTCAATCTACCAACCAACGCTTAGCTGCATAACAAAATTTTTATATCATACCATATCTTCGTTAATAAAAAATCAATGTTAGGCTTCTTCTGCTGACATCTATAATCACTATTGCAAAACACCCCCTAACGTTGCTCGCGTGTCATTTCTTTATACGTAGTTTCAAAGTCAAACATCGTAGGCACCAAACGTTCGTTTGCTACTTCAACGGCAATTAGGCACATGGTGTCACAATTTTTCCATCACTAATCCTTGCTTTAAATTAAGTGCTCCCGTTTTATTCAGACACGTTGAGCCTAGTTTGTCACCCCAGTTCTTGCACATCTTTCTTTGCTTTTCAACGTTTTCTTCATTCTTTTTCCTTGTTAAGATAGAGACAAGACAAGACAAGACAAGACACTTTGATTCACG

Gene Sequence:

>Vu_07135(-)

ATGGGTTTGTTTAGGTTAGCAGTGTTCCTGTTTTTCTGTCTGGACACTGTTCATTCTACAGTTCTTGGGAAAGAAAATGCTGGCATCGTGAATGGAAAAAAATCACTTATTTCATTCATGTCAGGCATTGTTTCAGACCCTCAAAACGCTCTGGATAGTTGGAAGTCACCCGGTGTTCATGTTTGTGATTGGTCGGGTGTGAGATGTAACAATGCAAGTGACATGATCGTAGAGGTTGATCTCAGTGGAAGGTCTCTAGGAGGCACTATTTCCCCTGCCCTTGCTAACATCTCTTCCTTGCAAATTCTTGATCTTTCTGGGAACTTTTTGGTGGGTCGGATTCCAAAAGAAATAGGCCATTTGGTTCGGCTTAGACAACTCAGTTTGTCTGGGAATTTTCTTGAGGATCACATTCCATCCGAGTTTGGTTCACTTCACAACTTGGACTACCTTAACTTAGGAAGCAATCATCTTGAGGGAGAGATCCCTTCTTCACTCTTCTGCAATAGGACTTCACTGGGTTATGTAGACCTATCTAACAATTCCTTAGGTGGCCAAATCCCCTTGAACAAAGGGTGCATCCTTAAAGAACTCAAGTTCCTATTACTTTGGTCTAACAAGCTTGTAGGAAAAGTTCCTTTAGCTCTTTCAAACTCTACCAAGCTAAAATGGCTTGATTTGGGGTTGAATATGTTGAGTGGAGAGCTTCCTTCTGAGATTGTAAGTAATTGGCCACAACTACAATTCCTCTACTTGTCGTACAATAATTTTACTAGCCATGATGGTAATACCAACCTTGAACCTTTCTTTGCCTCCTTGGTGAATTTATCGAACTTTCAAGAACTTGAATTGGCGGGAAATAATCTTGGTGGAAAGCTGCCTCACAGTATTGGTGATCTTCCTACCAGCCTGCAACAACTCCACCTAGAAAAGAATCTCATATATGGCTCTATACCTCCTCATATTTCCAACCTTGTCAACCTGAATTTCTTGAAGTTGTCTAGTAACCTAATAAATGGATCAATCCCTCCCAGCCTCGGCCATATGAATAGGCTAGAAAGAATTTACTTATCAAACAATTCACTATCTGGTGAGATTCCTTCAACCCTTGGTGGCATTCAGCATCTGGGACTTCTAGACTTGTCAAGAAACAAGCTTTCTGGCCCAATACCAGACAGTTTTGCAAATCTACCCCAGTTAAGAAGGCTTTTACTTTATGACAACCAACTTTCTGGAACAATCCCACCAAGTCTGGCAAAATGTGTAAATTTGGAGATTTTAGACTTATCTCACAACAATATAACTGGGTTGATTCCTGCAGAAGTTGCAGCCTTGAGTAGCTTGAAACTATACCTGAATTTATCAAACAATAACTTGCATGGGTCTATTCCATTAAAGCTCAGCAAAATGGACATGGTTCTAGCTATTGATTTATCCATGAATAACCTCTCTGGCAGCATACCACCACAGCTGGAAAGTTGCATAGCACTGGAGTACCTCAACCTCTCTGGTAACTCCTTTGAAGGCCCTCTCCCTTATTCATTAGGCCAATTGCTTTATATTAGAGCACTTGATGTGTCTTCAAATCAGTTGACTGGGGCAATACCACAGTCCGTGCAGTTGTCTCCCTCTCTGAAGGAACTTAATTTCTCTTTCAACAGATTCTCAGGGAAAGTGTCAAACAAGGGAGCATTTTCAAATCTTACCATAGACTCTTTCCTGGGAAACGGTGGTCTCTGCGGCCCGTTCAAAGGCATGCAACAATGTCACAAGAAATGTAGTTATCATTTGGTGTTCTTGTTAATTCCTGTGTCACTATTTGGCACCCCTTTCCTATGCATACTTTTTAGGTACCCAATAGTAATGAAGTCAAGAGTGAAAAAACGATTTGCAACTGTTAGCAGAGGTGATTTTGAGGATGTAGAAGAAGGAGCAAAAGAGGTCAAGTATCCAAGAATCACATATGAACAACTTAAAGAAGCCACCGGAGGCTTCGGTGCTACAAGCTTAATTGGTTCAGGCCGGTTTGGGCAGGTCTACGAAGGAATGCTCCAAGATAATACAAGAGTAGCTGTGAAGGTGTTGGACACAACACAAGGTGAGATTTCAAGGAGTTTTAGAAGGGAATGTCAAATACTGAAAAAGATAAGGCACAGAAATTTAATAAGGATCATAACAATCTGTTGTAGGCCAGAATTTAATGCTCTTGTTTTTCCCTTGATGCCAAATGGTAGTCTCGAGAGTCACCTATATCCAAGCCAAGGACTGAATGTGGTTCAACTAGTAAGAATCTGCAGTGATGTAGCCGAGGGAATGGCCTATCTGCACCATTACTCTCCAGTGAAAGTAGTGCATTGTGATCTTAAGCCTAGCAATATACTCCTTGATGAAGATATGACAGCTTTGGTCACTGATTTTGGAATTTCAAGGCTTGTACAAAGTGATGAGAACACATCCACCAACACCTCATCTTTCAGTTCAACACATGCTTTGCTATGTGGGACGGTCGGTTACATAGCTCCCGGTATGTACTTTGTCACTTTAGATTCAACATTTTTCTGTACTATGCTCTTAAAATGGAAGTACGATAGTATCTTTTATATCTATTTAATAACATAAAATGTTTTGTATTCCATTACACAGAGTACGGAATGGGAAAAGATGCTTCAAGTGAGGGTGATGTTTACAGTTTTGGGGTGCTTGTGTTGGAGATGGTCTCAGGTAGACGCCCCACAGAAGTGCTCAGCCATGAAGGCTCAAGCTTGAGTGAATGGCTTAAGAAACTATACACACAACCACACCACCTTCAAAGCTTTGTTCAACAAACACTTCAAAGGTGCTATCCTTTTGGTCTGCCAAATCCTCACAACAAAGTGTGGAAAGATGTTATTCTGGAACTCATTGAGCTGGGGCTGATTTGCACTCAGCACAACCCTTCAACAAGACCAAGCATGCACGACATAGCACAAGAGATGGAGAGGTTAAAGGACTACCTCACCAAGTCGACCTTCACACGTCATTCAAGTCAATCCCAACATTAA