Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_07109	LG1	102261551	102264115	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	protein phosphorylation, phloem or xylem histogenesis, protein phosphorylation, protein phosphorylation
Cellular Component	located in	plasma membrane
Molecular Function	enables	protein binding, protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein binding

SNP	Position	Effect	Amino acid change
G/A,*	102261641	missense_variant	p.Val31Ile
G/C	102262023	missense_variant	p.Cys158Ser
G/A	102262065	missense_variant	p.Arg172Lys
G/T	102262232	missense_variant	p.Asp228Tyr
G/T	102262586	missense_variant	p.Gly346Cys
A/G	102262615	synonymous_variant	p.Leu355Leu
T/C	102262906	synonymous_variant	p.Asn452Asn
C/T	102262925	synonymous_variant	p.Leu459Leu
A/G	102262969	synonymous_variant	p.Gly473Gly
C/A	102262983	missense_variant	p.Ala478Glu
A/T	102262984	synonymous_variant	p.Ala478Ala
G/T	102262989	missense_variant	p.Gly480Val
G/A	102263032	synonymous_variant	p.Ser494Ser
T/A	102263116	synonymous_variant	p.Thr522Thr
T/A	102263209	synonymous_variant	p.Leu553Leu
C/A	102263214	missense_variant	p.Ala555Asp
T/G	102263248	missense_variant	p.Phe566Leu
C/A	102263249	missense_variant	p.Leu567Met
C/A	102263355	missense_variant	p.Pro602His
G/C	102263386	synonymous_variant	p.Val612Val
C/G	102263460	missense_variant	p.Pro637Arg
C/T	102263541	missense_variant	p.Ser664Phe

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_07109.1

MGLGVFGSVLVLVLLFKHLESQQPNTDEFFVSAFLKHTSLASSQAYNFSASVCSWQGVSCDANREHVVGLVFSGMNLSGTVPDNTIGKLGKLQTLDLSHNNITGLPSDFWSLSSLKNLNLSSNHISGSLTSNIGNFGLLESIDLSSNNFSEEIPETVCSLLSLRVLKLNHNRFAHNIPYGILKCQSLVSIDLSSNQLNGTLPDGFGASFPKLRILNLAGNNFNGRVSDISGLKSIANLNISGNSFQGSIVDMFQGRLEVLDISRNQFQGHIPQVLYNFSGYNWSHLVYLDLSENKLSGEFFQHLNESLNLKHINLAHNRFTMQKFPQIEMLLNLEYMNLSKTSLVGEIPGKISQLSNLSALDLSLNHLSGKIPSLRNEHLRVLDLSNNNLTGAVPQSVLEKLPGMETYNFSYNNLTLCASEIKPEILQTAFFGSLNSCPIAANPRLFKRRDNGHTGMKLALALTFSMIFVLAGLLFLAFGCRRKTKMWEFKQSSYKEEQNISGPFSFQTDSTTWVADVKQATSVPVVIFEKPLLNITFADLLAATSNFDRGTLLAEGKFGPVYRGFLPGGIHVAVKVLVVGSTLTDEEAARELEFLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVQSTDDWSTDTWEETDNNGIQNAGSEGLLTSWRFRHKIALGTARALAFLHHGCSPPIIHRAVKASSVYLDYDLEPRLSDFGLAKIFGSGLDDEIARGSPGYVPPEFSQPEYDTPTPKSDVYCFGVVLFELVTGKKPVGDDYPDDKDATLVSWVRGLVKKNQSSNAIDPKIRDTGPDEQMEEALKIAYLCTADRPFKRPSMQQIVGLLKDIEPTAD*

CDS Sequence:
>Vu_07109.1

ATGGGGTTGGGAGTGTTTGGTTCTGTTCTGGTTTTGGTACTTTTGTTCAAGCATTTGGAATCTCAGCAACCAAATACTGATGAGTTTTTTGTATCTGCGTTCTTGAAGCATACGAGTTTAGCATCCTCACAAGCCTACAATTTCTCTGCTTCTGTCTGTTCATGGCAAGGGGTTTCTTGTGATGCCAATAGAGAACATGTTGTTGGCTTAGTCTTTTCTGGTATGAACCTCTCTGGCACTGTACCTGATAACACCATAGGCAAGCTAGGCAAACTTCAAACTCTAGATCTTAGCCACAACAATATCACTGGCTTGCCTTCAGATTTTTGGAGCTTAAGCTCCCTCAAGAACCTTAATCTCTCCTCGAATCATATTTCTGGTTCACTGACTAGCAACATTGGCAACTTTGGTTTGCTAGAAAGCATTGACTTGTCCAGCAACAATTTCTCTGAGGAAATTCCTGAAACTGTTTGCTCACTGCTGAGTCTAAGGGTCCTCAAACTCAACCACAACAGGTTTGCACACAACATACCTTATGGGATTCTCAAGTGCCAGTCTCTAGTTTCAATTGATCTTTCATCAAATCAGCTCAATGGAACACTTCCAGATGGTTTTGGTGCTTCTTTTCCCAAGCTTAGGATATTGAACCTTGCTGGGAATAATTTTAATGGTCGTGTTTCAGATATTTCTGGGTTAAAGTCCATTGCTAATCTCAACATATCAGGGAATTCGTTTCAGGGTTCCATTGTGGACATGTTTCAGGGAAGGTTGGAGGTTCTGGACATTAGCAGAAACCAATTTCAAGGCCACATTCCACAGGTACTATACAACTTTAGTGGTTACAACTGGTCTCATTTAGTTTACCTAGATTTGTCAGAGAATAAGCTTAGTGGGGAGTTTTTTCAACATTTGAACGAGTCCTTGAATTTAAAACACATTAATCTTGCACACAATAGATTTACCATGCAGAAATTTCCCCAAATTGAAATGCTCCTGAATTTGGAATATATGAACTTGTCCAAAACCAGCCTTGTCGGTGAAATTCCTGGTAAAATCTCACAATTAAGCAATTTGAGTGCACTTGATCTTTCTTTGAATCATCTGAGTGGGAAAATTCCCTCACTGAGGAATGAACACCTCCGAGTCTTAGACCTCTCAAACAACAATTTAACAGGAGCAGTCCCTCAATCTGTCTTGGAGAAGCTCCCTGGGATGGAGACATACAACTTCTCTTATAATAACCTAACACTTTGTGCTTCTGAAATCAAACCTGAGATCCTGCAAACAGCATTCTTCGGATCATTGAACAGTTGTCCAATTGCTGCAAATCCACGACTCTTCAAAAGAAGAGACAATGGACACACGGGAATGAAGCTGGCCCTGGCACTGACCTTCTCAATGATCTTTGTGCTGGCTGGACTTTTGTTTCTAGCATTTGGTTGCAGAAGGAAAACAAAAATGTGGGAATTCAAACAATCTTCGTACAAAGAAGAACAAAACATTTCAGGTCCATTTTCATTCCAGACTGATTCAACAACTTGGGTGGCTGATGTTAAGCAAGCAACTTCAGTCCCAGTAGTAATCTTTGAGAAGCCATTGTTGAACATCACATTTGCAGACCTCTTGGCTGCAACTTCCAACTTTGACAGAGGCACCCTTTTGGCTGAGGGAAAATTTGGACCAGTCTATAGAGGATTTCTGCCTGGTGGTATTCACGTGGCAGTTAAAGTTTTGGTTGTTGGTTCTACATTAACAGATGAGGAGGCTGCAAGAGAGCTAGAGTTTCTTGGTAGAATCAAGCACCCCAATCTTGTTCCTTTAACCGGATATTGTGTGGCTGGGGACCAAAGAATTGCCATATACGATTACATGGAGAATGGTAACTTGCAAAACCTGCTTTACGACCTGCCACTTGGGGTACAAAGCACAGATGACTGGAGCACAGACACATGGGAAGAAACAGACAACAATGGAATTCAAAATGCTGGCTCTGAAGGGTTACTGACATCTTGGAGATTTCGCCACAAGATAGCCCTTGGCACGGCTCGAGCGTTGGCATTTCTGCATCACGGTTGCTCTCCTCCAATAATTCACAGAGCAGTTAAGGCTAGCAGTGTTTATTTGGATTATGACTTGGAGCCGAGGTTGTCTGATTTTGGACTGGCCAAGATTTTCGGAAGTGGCTTGGATGATGAAATTGCGCGTGGCTCACCTGGTTATGTTCCACCGGAGTTTTCTCAACCAGAATATGACACCCCAACTCCAAAATCTGATGTGTACTGTTTTGGGGTGGTGCTGTTTGAGCTAGTAACTGGAAAAAAGCCAGTTGGAGATGACTACCCTGATGATAAAGATGCAACTTTGGTGAGTTGGGTGAGAGGACTTGTGAAAAAGAACCAATCTTCAAATGCTATTGATCCAAAAATTCGTGACACAGGACCGGATGAACAAATGGAAGAGGCCCTTAAGATTGCTTATCTTTGCACTGCTGACCGTCCCTTCAAACGACCAAGCATGCAACAGATAGTTGGACTTCTGAAGGATATTGAACCTACTGCTGATTAG

Promoter Sequence:
>Vu_07109::LG1:102259551-102261551(+)

TAAAAGTTAGGACTAATTCAAAACACTTTTATAACGAGAGACTAAATTGAGATTTTTCAACCAAAGTGAAGACTAAATTGGCTATTAAACCTAGAATTATTATCTGTGCAGTACATATAGTAAGGGTGAGATATGTTTAGTTTTCAATAAAATATTATTTTTAATTTATTTTAAACTAATTATTCTGTTTATTTTTCTTAATAAATTTTAACAAATTTGCTTTTGTAATATATTTATTGTTGTTCTTAATTTATATAAAATATTTAATTGCGATGATAATAAAATAATTTAATAAAAGTAAATAAGTAAATGTAATAAAAATATAAATATTCATAAAAAATAAAATAATATTAAATATTTAAAAAAATAAACTTTAAATTTAACTTAAGCCATCGTAAAATTAAATTTATACTCACTTGTATCCTTCAAATTAACCTTCAATCAAACTTCCAACAAATACAAAATCAACTTAATATTATCTCAGAAACATAAACTGAACCTTGCTGTGAGAAAAATCAACACCTTGACATAGGTTCACGTGATGCGACAAAGTAGCCGAAGGACTCAAAACCCCAGATTGAAATATATTATTGTTTTGAAGTGAAGAATGGAACCCAAACAAAGGGTCCACATGGTAGATTCTTGGATAGTGCCACTATGTAATTGGCAACCTAGTAAGCACAAATTAAGGTGGGAAAAGGGCAAAACAATAGACTCACTTGGGAAAATGGGGTTAGAAATTAGCCATTTTCTATGTTTCAAAGTCAAACAAATACACTATATTTCTACCAAAAACCCTAGCTAACCCATTGAAATGATCTTCATTATAACACAATTATTTAAGTTCTTGAGGGGACTGGAGCTGGCTTGTGAAACCACCGTTATAAAGTAAAGATGCTGGTAACAACCAACAAGCCAATGCTGTTTCCTGCTTTTTCTAGTACCAACAACATTAATTTCACTCTGTCAAAATAAAAACATTAATTTTCACCCCAAAGATCATAACTTTCGTCAAAAGGGTCATACAAAATCGAGGTCATGTTGTTGGTCCCCTTTTTTTCTTAAGAATTTTATATGATAGGTAAGTTATATAATATATTTCTAAAAATCCCTTTCTTTAAACTTTTAATCATGAACTATTTTAAAAATAAACACAGGTTAATGAAACCACTAAGTATAACATCGCAGAGGTTTCTGTAAAAAGAGAACAAGAAATGATATGTTCTCACTTTTTTTTCGTCATATAATTATGATATCAGCTTCTAAAGAGACTTTTATTTTCTTTCTTTTTCTTTTCTTTTCTTTTCTCCAAATGGTGATAAACACCCTCCCTCACTCAACAAAGAATCATTGAATTCACACCAACAAATCTGATATATTCACACCATAACCAACCGTCTCGTCAATGGGTTCAGTTTCTTCCCATTTATGAAGCTGAAGCACTGCACAGTTCATTCACATATCTTTCCCTGTAAACACTTCACTGCATGTTGCGCTGTCTCTGCCTCTTTTGAAGGGGGAAAAAGCCCTCTTGAAAACTAAGTCTCTACACAAAAAGTTCTGCCACAGAACCAAAGCATCACAGCTTTTCCGCAACTTTGAGTCCAGACAAAGCCAATAGTTTGCTTCTTGCATCGGTTGTTTCTTTATCTATCCTTCTTTTTGTTTGCTTTCGGGGATCCTCACATCCAGACAAACTGGTTCACATTCTCTTGTTTACAGTCCACAATCTTCATTTTATCATAGTGGCTTTGATTTTTCTGAAAAAAAGTAGTATTAGTTTTATAAGTCCGTGCTTTGTACTTTTACTCTTTCAACTACCGCGTCCTTTAGCATGTGTTTTGTCCTTCTATGCTATATTGTGCGGTAAAAAAGTTGTTTCCCTGGCTGAGATTTTTCTTACTGTAAAATCCATGCTTGATGATATGTTTTGAAGTTCTGAGGGAGCATTTTCCTCTGTTGGCTTGCATCCCTTGCAAGTAGCCGACATCACTCCTTGA

Gene Sequence:

>Vu_07109(+)