Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_06925	LG1	100283864	100285201	PREDICTED: probable receptor-like protein kinase At5g20050	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	defense response to other organism, cellular response to oxygen-containing compound, phosphorylation, defense response to bacterium, phosphorylation, signal transduction, regulation of defense response, protein phosphorylation, cellular response to hormone stimulus, cellular response to hormone stimulus, protein phosphorylation, response to abscisic acid, response to abscisic acid, defense response to bacterium, immune system process, cellular response to hormone stimulus, defense response to other organism, cellular response to oxygen-containing compound, defense response to other organism, defense response to bacterium, protein phosphorylation
Cellular Component	is active in	cellular_component
Molecular Function	enables	protein serine/threonine kinase activity, kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity

SNP	Position	Effect	Amino acid change
A/C	100283871	missense_variant	p.Asp3Ala
C/A	100283886	missense_variant	p.Thr8Lys
G/A	100283995	synonymous_variant	p.Val44Val
C/A	100284004	synonymous_variant	p.Ala47Ala
A/T	100284543	missense_variant	p.Lys227Met
T/G	100284550	synonymous_variant	p.Val229Val

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_06925.1

MEDRKANTISAIAVIALIIFIIVARVSLKLSHAFFLICGASIAVIIAVFSCAFIRHRYHRRRRLLESQLKTEGRELRIEYSFLRKVAGVPTKFRFKELEEATDGFQSLLGRGSSASVFKGILSDGTSVAVKRIDGEERGEKEFRSEVAAIASVHHVNLVRMFGYCNAPTSPRYLVYEYIPNGSLDCWIFPSREKRARRSGCLPWNSRYKVAIDVARGLSYLHHDCRKRVLHLDVKPENILLDEDYKALVSDFGLSTLVGNDVSQVMTTMRGTRGYLAPEWLLERGVSEKTDIYSYGMVLLEIIGGRRNVLRVEDPRDSSKKKWEFFPKIVNEKVREGKFMEIVDHRLIESGVVDESEVIRLVYIALWCIQEKPRLRPTMAQVVDMLEQRVRVDEPPGSRMILVDLLAVDEDPVDHRNLARLLTSVSSNVDCTSTYSLGTTILSGR*

CDS Sequence:
>Vu_06925.1

ATGGAGGACAGAAAAGCCAACACAATCTCTGCGATAGCGGTGATTGCACTTATCATATTTATCATCGTTGCACGCGTCTCCCTGAAGCTTTCACACGCCTTCTTCCTCATATGTGGCGCTTCTATTGCTGTGATCATCGCCGTCTTTTCGTGTGCATTCATAAGGCACCGTTACCACCGCAGGAGGAGGTTGTTGGAATCACAGTTGAAGACGGAAGGGCGAGAGCTTCGAATAGAGTACAGTTTCTTAAGAAAAGTTGCCGGGGTTCCCACGAAGTTTCGTTTCAAGGAGCTTGAGGAAGCAACGGATGGCTTTCAATCACTGTTGGGAAGAGGGTCCTCGGCTTCGGTCTTCAAAGGCATTCTCAGCGATGGAACTTCGGTTGCAGTGAAACGGATCGATGGAGAGGAGCGTGGGGAGAAGGAATTCAGATCAGAAGTTGCCGCCATTGCTAGCGTGCACCATGTCAACCTGGTGCGCATGTTTGGTTATTGTAACGCCCCCACATCGCCTAGGTACCTCGTTTATGAGTACATCCCAAACGGGTCTTTGGATTGTTGGATCTTTCCCTCAAGGGAAAAGCGTGCACGTAGAAGTGGGTGTTTGCCATGGAACTCGAGGTATAAGGTTGCGATTGATGTTGCCAGGGGGTTGTCTTATCTTCACCATGATTGTAGGAAGAGGGTTTTGCACCTTGATGTCAAACCCGAGAATATACTCTTGGATGAGGATTATAAGGCTCTTGTTTCAGATTTTGGTCTCTCAACGCTTGTAGGAAACGATGTGAGTCAGGTGATGACAACAATGAGGGGGACAAGAGGGTACTTGGCTCCTGAGTGGCTTTTGGAAAGAGGAGTGTCAGAGAAAACTGATATTTACAGTTATGGGATGGTTTTGTTGGAAATAATTGGAGGGAGAAGGAATGTTCTGAGGGTGGAGGATCCGAGAGACAGCAGTAAGAAAAAGTGGGAGTTTTTTCCAAAGATTGTTAACGAGAAAGTGAGGGAGGGGAAGTTCATGGAGATTGTGGATCATAGGTTGATTGAAAGTGGGGTTGTGGATGAGAGTGAGGTGATTAGATTGGTGTATATTGCATTGTGGTGTATACAAGAGAAGCCAAGATTGAGACCTACAATGGCACAAGTGGTTGATATGCTTGAGCAGCGTGTGAGGGTGGATGAACCCCCTGGTTCCAGAATGATTCTAGTTGATTTACTAGCTGTTGATGAAGATCCTGTAGATCATCGAAATCTTGCAAGGTTGTTGACCTCTGTTTCGAGCAATGTGGATTGTACATCTACTTACTCACTTGGAACAACTATTTTATCTGGCAGATAG

Promoter Sequence:
>Vu_06925::LG1:100281864-100283864(+)

TTATTTAGAATTAATTCCGTTTCTATATAAGTAATTTTTTTTTATAGAAATCATATTCAGAAAACTTGTTTTGAGGATTTGGAAGTCACTTTTACAAAAGGTGAAAATGGTTGTTTCGAAAATTATTGAGGTACCATTAGAATTTATCGAGGTGCTGGAAGAAAGGGCTTGTTTTGGTTATTCTCTCTTATATCTCTCGTTGTTAGTTTTGGGCTTGTACTTAGGCTCGGCGTCCGTAATTTTTCTTCTATTTGTTTCTTCTTTTAATCTTGTCCATTTATTTACAAGGGTTTTCTTCAATATCTCCAAGTTTTCTTTTTATACCTCCAAATTTCACTGTCAAAAAATTTAACCTTTCAATATATATATATATATATATATATATATATATATATATATATATATATATATAATAAATTATATAAGCATTAATTATTAATTACCAAACATATTTACTTCCATATTCGATAATTGATTTGTCTCATTGGATAAATTACTCCAATATTTAATTTCTCTAAAATGATTGCAAAATAACACAATAACTTCCTATCTCATGATGCATTAACAATATAAAAAAAAGACATGATAATCAAAACTTAAAAAAAAACTACATTTAAGACTGTCCAATTCGATATGTAAATTTCAGAATATAAATTAATATTTTGAATTATACAATCTAAAATTCAAAATTATATTTTTTATTTCAGAATGTAAATTAATATTTTGTATGTATAAAATTACTATTTTTTTATATTTCGAATTGTGCAATTAAAAAACATTTAAAAATTACTTGATTCAAAATATTTACGAATTGAACAATCAAGAATAATAATTCAAAGACGAAAATAAACTTACCCACAGGAAATCACAACGAACTGAATGCAAATTCCTCCCACCACAAATCCCAACCAGCTACCAACCACCACCTACACTCACTACCAACAAGCAAACCATTCAACATATTCTCCATTTTTATTAATTTCAGCAAGGGGATATTTGGAATTTTAAAAAATATGGGGGGTGCAGGAAGAACACATGGGGTGGAGGAAGAAATGCCCATTCATATATATCTATAAAAGCCAAGAGTCTCATTATTACTTAATCTATTTTGTAAAATAATTTATCAATCTCACCTCCTTATACCCCTTTTCAAAATATTCCAAGAAATGACTCATATATTGCCAAACGTGTCTGTTGAAAATAATTTCCAGAAATAGTAATCCTAGGAATATAATTTCTGAACACGTAACAAATCGGTGAAAAAGATGTCGATAATTAGCTAAAAAAATTGACATCATAAGTAAAAAATAAATAAAAAATTAAAGAAAATCATATCCTACTGAAGACAGATGAATTGGGGCATCCCAAAATGATAGTAGTGAGAAAGAGAGCTTTGTCATTGAATTCTCACATGGTTGGAGGGCCATCTTAAAAACAACCACACATGAGAGCTTTGTCATTGAATTCTCACATTGTGCTAAATTTTGTGGAAGAGAGGGAAACAACACAACAAAAAGTTTTTCATTTACTTCCCAACACAGAGAGGAACCCAATTGTTGACCAAATTAAACCTCAACTTGTCCTCATTCTTCATTCCCCTTTGTCACTACATATGTTGCCATTGGATTTCGAGAACTTCAACACTGACCAAATCAAAGCCCGCGTTTCGCACAACAATTCTCAAAACTACAACCCCATGCATTTTTCTACGGTCCAGACGTGTTGCTTTTAATTAAATTTCTTGGTTACTTCCAACGTACATAATTAAATTAATGTTAATACCAACCATTATCTAAGTTTTTTAGCCGTTTTCGACGATAAGAATGGTCCCCCTCACTAAAACTAATGAAATAGTTGTATTTATATAAAAACAAGTTACACTTTTTTTTTCTTGCGGTCACTCATCACAACCTAATCTAACCTCCCTAGTCTTGTCAGGATACTAAAGAGACCCTTTTGCCGTTGGTTTACTCCTTCACCAGAAAACAATGAAGTTCTAA

Gene Sequence:

>Vu_06925(+)