Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_06884 LG1 99773317 99774725 PREDICTED: transcription factor DICHOTOMA
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of secondary shoot formation, regulation of transcription, DNA-templated, secondary shoot formation, regulation of secondary shoot formation, secondary shoot formation, regulation of transcription, DNA-templated, secondary shoot formation, secondary shoot formation, regulation of transcription, DNA-templated, regulation of secondary shoot formation, regulation of secondary shoot formation
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   protein binding, sequence-specific DNA binding, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, protein binding, transcription cis-regulatory region binding, protein binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
C/T 99773375 missense_variant p.Pro20Leu
T/C 99773384 missense_variant p.Phe23Ser
T/A 99773440 missense_variant p.Ser42Thr
G/A 99773658 synonymous_variant p.Arg114Arg
G/T 99773810 missense_variant p.Trp165Leu
A/G 99773814 synonymous_variant p.Leu166Leu
T/A 99774339 synonymous_variant p.Ser341Ser
C/G 99774351 synonymous_variant p.Ser345Ser
G/A 99774470 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_06884.1
MYSSNTSLNGNDLLSYPSQPFCFRPFSFESNPTNSSKDQSNSNYALPPPLPPPLSFLQSFDENIFLEHHHDFLLLHPSLADPGFSKNLHVAPEIPAIPSSFGQGGAAPMDHTTRKRSCKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVEWLLNQAKVEIKQLAREKNSVGGAKSASSTSECEGVSSLDEVVVSGVNEEQERETPNMKRRTSKVCRKSAFNTIDKESREKARERARERTIEKMRTRRVLAADASNLNRLSSWNPFETVEDSAGTQSQSVNHPSLDAHLPEAEEPTSHAKEHLEDMARHEDNSLVIMNKWSPTMIFNSLNNSAVLHEHQFAEFQSLGKPWETYNDNI*


CDS Sequence:
>Vu_06884.1
ATGTATTCCTCAAATACCTCCCTCAACGGCAATGACCTACTCTCGTACCCTAGCCAACCATTTTGCTTTAGGCCTTTTTCCTTTGAAAGCAACCCAACCAATTCTTCAAAAGATCAATCCAATTCCAATTACGCCCTTCCTCCTCCTCTTCCTCCTCCTTTGTCCTTTCTTCAATCCTTTGACGAAAATATCTTTCTCGAACATCACCATGATTTTCTCTTACTTCACCCCTCTCTAGCCGACCCCGGATTCTCAAAAAACCTTCACGTTGCTCCCGAAATCCCCGCAATTCCCTCCTCCTTCGGACAAGGTGGCGCCGCCCCTATGGACCACACTACAAGGAAGAGGTCCTGCAAGAGAGATCGCCACAGCAAAATCAACACCGCACGAGGCCTCAGAGACCGAAGAATGAGGCTGTCCCTCGAAGTTGCAAAGAGGTTCTTCGGGTTGCAAGACATGCTAGGCTTTGACAAGGCCAGCAAAACCGTCGAGTGGCTACTAAACCAAGCAAAAGTCGAAATCAAACAACTTGCTAGGGAAAAAAACAGTGTTGGTGGTGCCAAGAGTGCATCATCAACTTCTGAATGCGAAGGGGTGTCTAGCTTGGACGAGGTTGTCGTGAGTGGAGTTAACGAGGAGCAAGAGAGGGAGACACCCAACATGAAGAGAAGAACAAGTAAGGTTTGTAGAAAGAGTGCATTCAATACCATCGATAAGGAATCGAGGGAAAAGGCAAGAGAAAGGGCGAGAGAAAGAACAATAGAGAAGATGAGGACTCGAAGAGTACTTGCTGCAGATGCTTCAAACCTTAACCGTTTGAGTTCTTGGAACCCCTTTGAAACGGTTGAAGACTCTGCGGGTACTCAGAGCCAAAGCGTGAACCACCCCTCCTTGGATGCGCACCTTCCCGAGGCCGAAGAACCAACTTCTCACGCTAAGGAACATTTGGAGGACATGGCGCGCCATGAAGACAATTCTTTGGTGATCATGAACAAGTGGAGCCCAACCATGATATTCAATTCTCTCAACAACTCCGCAGTCCTTCACGAACATCAATTTGCAGAATTTCAGTCCTTGGGAAAACCTTGGGAAACCTACAACGACAACATCTAG


Promoter Sequence:
>Vu_06884::LG1:99771317-99773317(+)
TTGTGGTCTGGCAATGAAGCACTCCTAGATGTTTGTACTAGTACACAAATTGAGCAGTGCTTGGTTGTCATAGTTATCTCCTGGTTGAAAAGAACCCCAGACCAACCCTTTGCTTTGCCATATATCTATCGTGTGGTCCTTGCAATTATGCGATCTAAAGTGGTGTTGATCGAGACTGCTATATAGCTATAGATAGATAGATAGAGATAGTGAGAGAGTGGTGGAGAGAACGGCATGTATAAATGGAAAGACAGAAAGAGAAAGGGAGAAAAAACAGCAAATTTTTGGTGTACTATAGAGTGCTTTCAAGTGTGGATGGACTATTACCATTTTGACAACAAGTTGGGAGAGATCATGGGGTGTTTTTAGTTCTATGGCAAGTTCCAATTGGTTATTAGGGCTTGGATGGTCTCATTCTCTACGCATACATACATGACAGTGGCAAGTACCATTCCTTTCTTTCTTCACTCAGAGCCAGACATAGATAGAGAGAGAGAGAGAAACAATCTACTTCACTATATACATATATCAAAGTAAGCACAACACAGAAAGATAAGCACGCAGCACGCATGGGAAGAGAAACCAGCCAACATCAACAACATTCTCTAACACACTCTGATATCGATAGATAGATAGATAGATAGAGATAGATACTCACAAACATTGACATCCACCACAAACACAGCACAAAGAAGAGAGAGAGTGATGAGTGATGAGTGATGATAGAGTTGGATAGTGAGATTCAGAATGATGGCGCATCTCTTTTTGGAGAAAGTGACCTACTGAGCAACCCCAGTCAAAGGGAGCATTGGCTACCATTGCAAGCCGTTCCATGGAAATAATTGTACTTTGTTTCCCCCATTATCTACTTTTAGGGTTAGACACACACGGACACCTGGAGGTTTCCAACAGTGAATCGAAATTTTAGTTAAAAAAGACAAAGGGAATAATAAGAAGAAATGAAATTATTTGAGTTATGTGAATCTTCCCATAAAAAGTCACGGCATGTGACATCCCACTCCTACGCACCATGCTCTGTGGGACAACGTTGAACGCAAATAGTATAGTATAGTACCTTTAATTTCAACAATCGAATTACTTCTTCAACATTTATCCAATACCAGTTTAATTTAATTATCAGATATGATGAATTTCGTAACAAAACATGTCTCTTTCGGAGAAAACATTTTTCTCTGATAATAAATTTGTGAAAGAAAAACAGTGTAAGAAGAGAAACTGGTATAGACTAGGGAATTAAAGGTGTGGTGAGGTTGAGTTTTCTGTCAAGTCGCGTGTGTTCTGTGCGCACCACGTGAAGTGGCACAAACTATAACTTTTTTCCTATCCACTCACTTCTTCTTGCAATGTTATCGTTCTAAAGAGATCACAACTTTTTGCTCAAAAGAAACGATTAAGAAAAAGGATGGCCCTTGTCTACAATAAATTGCTGATGTTGGGTCCTTTGTCTCACACATTATCTTTAGTACTCACACCACTCTCCTTCTCCCAACCTCTCACCCTCTCTCATAATTCAACCCTCTCATATGCTTATAACAAGGTATTATTGTCTATGTGCTGTCATTCTCACACTGTACCACACTTTTCTTCGGCCTCCCAATTCCACTGTGCCTCCACTCTCACACAAACTAACACACACACACGAACACACACACACTTATAAGCTGCTGCATCATATCCGTAGCCTTGTCCCTCTCACTCATCAGACTCACCCCTAGGTGAAAATAAATAACTTTAGTACTAGCTGCTAGTAAGTATCTTGATTAGTAACACTCACATGCTTATGTTATGTCTTCCTTTACTTGCAGGGTAACAGCCAAAACCAAAAAGAAAATGAGAGGTTCTTTCTTTTTCATTAGGGATATAGATGCAGCAAAGATGTCGTTCTCAGGCATTCAAACTCCCAACCAATAACCAGTTCCATCCTGAAGGGTAGGGTTATTATTTTGGTGCAGTCTCCAGCTAAATATTAATTCCAGATA


Gene Sequence:
>Vu_06884(+)
ATGTATTCCTCAAATACCTCCCTCAACGGCAATGACCTACTCTCGTACCCTAGCCAACCATTTTGCTTTAGGCCTTTTTCCTTTGAAAGCAACCCAACCAATTCTTCAAAAGATCAATCCAATTCCAATTACGCCCTTCCTCCTCCTCTTCCTCCTCCTTTGTCCTTTCTTCAATCCTTTGACGAAAATATCTTTCTCGAACATCACCATGATTTTCTCTTACTTCACCCCTCTCTAGCCGACCCCGGATTCTCAAAAAACCTTCACGTTGCTCCCGAAATCCCCGCAATTCCCTCCTCCTTCGGACAAGGTGGCGCCGCCCCTATGGACCACACTACAAGGAAGAGGTCCTGCAAGAGAGATCGCCACAGCAAAATCAACACCGCACGAGGCCTCAGAGACCGAAGAATGAGGCTGTCCCTCGAAGTTGCAAAGAGGTTCTTCGGGTTGCAAGACATGCTAGGCTTTGACAAGGCCAGCAAAACCGTCGAGTGGCTACTAAACCAAGCAAAAGTCGAAATCAAACAACTTGCTAGGGAAAAAAACAGTGTTGGTGGTGCCAAGAGTGCATCATCAACTTCTGAATGCGAAGGGGTGTCTAGCTTGGACGAGGTTGTCGTGAGTGGAGTTAACGAGGAGCAAGAGAGGGAGACACCCAACATGAAGAGAAGAACAAGTAAGGTTTGTAGAAAGAGTGCATTCAATACCATCGATAAGGAATCGAGGGAAAAGGCAAGAGAAAGGGCGAGAGAAAGAACAATAGAGAAGATGAGGACTCGAAGAGTACTTGCTGCAGATGCTTCAAACCTTAACCGTTTGAGTTCTTGGAACCCCTTTGAAACGGTTGAAGACTCTGCGGGTACTCAGAGCCAAAGCGTGAACCACCCCTCCTTGGATGCGCACCTTCCCGAGGCCGAAGAACCAACTTCTCACGCTAAGGAACATTTGGAGGACATGGCGCGCCATGAAGACAATTCTTTGGTGATCATGAACAAGTGGAGCCCAACCATGATATTCAATTCTCTCAACAACTCCGCAGTCCTTCACGAAGTAAGTTCAATCTCATCCATCATACAAAAAATGGCATGATTTAGCTATAATTAACAAAGCCCTTGTGGAATACCAGTTAAGAAATTAAACGAATTGAAAGAGTGTTACTGGTACACCAATTCCACCACGATTTGAAATAAGAGTTATCTGCATATTAAACATTGGTTATAAACTTATATTTCATATATGTCTGTGCATGCTTGGTTTGATCATTAGCATGTTGTTGTTTCAATGAAAACCATGCATTTTCTATTCATATAATGTTGCTGAGGTTCCATTGATGAAATTATTTGCAGCATCAATTTGCAGAATTTCAGTCCTTGGGAAAACCTTGGGAAACCTACAACGACAACATCTAG