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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_06868 LG1 99603460 99606944 "Piriformospora indica-insensitive protein 2, partial "
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   response to symbiotic fungus, signal transduction, response to symbiotic fungus, biological process involved in symbiotic interaction
Cellular Component   located in   plasma membrane
Molecular Function   enables   molecular_function
SNP Position Effect Amino acid change
G/A 99603478 missense_variant p.Pro608Ser
T/A 99603492 missense_variant p.Tyr603Phe
A/C 99603494 missense_variant p.Cys602Trp
G/A 99603539 synonymous_variant p.Cys587Cys
G/A 99603554 synonymous_variant p.Phe582Phe
C/T 99603570 missense_variant p.Cys577Tyr
C/T 99603576 stop_gained p.Trp575*
G/T 99603595 missense_variant p.Leu569Ile
A/G 99603626 synonymous_variant p.Asp558Asp
C/T 99603634 missense_variant p.Glu556Lys
G/A 99603649 synonymous_variant p.Leu551Leu
G/A 99603657 missense_variant p.Ser548Leu
A/T 99603658 missense_variant p.Ser548Thr
T/G 99603669 missense_variant p.His544Pro
C/T 99603705 missense_variant p.Cys532Tyr
G/A 99603707 synonymous_variant p.Asp531Asp
C/G 99603709 missense_variant p.Asp531His
A/T 99603731 synonymous_variant p.Pro523Pro
G/C 99603738 stop_gained p.Ser521*
G/A 99603970 downstream_gene_variant
T/C 99603984 downstream_gene_variant
A/C 99604073 stop_lost p.Ter477Glyext*?
A/G 99604103 missense_variant p.Ser467Pro
T/A 99604119 stop_lost p.Ter461Cysext*?
T/C 99604129 missense_variant p.Gln458Arg
G/T,* 99604215 downstream_gene_variant
T/A 99604216 downstream_gene_variant
C/T 99604239 downstream_gene_variant
C/T 99604243 downstream_gene_variant
G/T 99604257 downstream_gene_variant
C/G 99604283 downstream_gene_variant
G/A 99604286 downstream_gene_variant
A/G 99604299 downstream_gene_variant
A/T 99604315 downstream_gene_variant
A/C 99604316 downstream_gene_variant
A/G 99604321 downstream_gene_variant
C/T 99604325 downstream_gene_variant
G/T 99604376 downstream_gene_variant
A/T 99604394 downstream_gene_variant
C/T 99604401 downstream_gene_variant
C/T 99604420 downstream_gene_variant
C/G,T 99604422 downstream_gene_variant
G/A 99604427 downstream_gene_variant
C/G 99604443 downstream_gene_variant
G/A 99604464 downstream_gene_variant
C/T 99604476 downstream_gene_variant
G/C 99604478 downstream_gene_variant
G/A 99604530 downstream_gene_variant
A/T 99604567 downstream_gene_variant
G/A 99604596 downstream_gene_variant
A/G 99604642 downstream_gene_variant
C/A 99604665 downstream_gene_variant
T/C 99604799 downstream_gene_variant
A/G 99604877 downstream_gene_variant
C/T 99605099 missense_variant p.Arg377Lys
C/G 99605101 missense_variant p.Glu376Asp
G/A 99605166 synonymous_variant p.Leu355Leu
T/G 99605171 missense_variant p.Glu353Ala
C/T 99605192 missense_variant p.Gly346Glu
C/G 99605210 missense_variant p.Ser340Thr
G/T 99605215 missense_variant p.Asp338Glu
T/A 99605224 missense_variant p.Arg335Ser
T/A 99605266 missense_variant p.Glu321Asp
G/A 99605300 missense_variant p.Thr310Ile
A/T 99605634 missense_variant p.Leu199Met
A/G 99605702 missense_variant p.Ile176Thr
A/G 99605727 synonymous_variant p.Leu168Leu
T/C 99605923 synonymous_variant p.Gln102Gln
G/T 99606128 downstream_gene_variant
G/A 99606132 downstream_gene_variant
T/C 99606206 downstream_gene_variant
G/A 99606373 splice_region_variant&intron_variant
A/G 99606426 downstream_gene_variant
A/G 99606432 downstream_gene_variant
T/C 99606448 downstream_gene_variant
G/T 99606641 downstream_gene_variant
T/C 99606666 downstream_gene_variant
T/G 99606745 downstream_gene_variant
C/A 99606877 splice_donor_variant&intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_06868.1
MNLLIANLFGGPSSRKFHAQKLDSSLTTMKKKEKEVIYSVIQLFVGKWWNGSYLYPDPCGWTPIQGVSCEQYDDGFWYVTTVNFGPVFDNSHMCSRDAKFPQQLFNLKHLKVLSLSSCFLSPTKNPVKLPLSNWDKFSHSLESLTLRSNPGLVGTIPSAIGSLRKLQSLVLLENGLIGKLPPSISNLVRLRQLVLAGNYLVGEVPDNYGGLSELLIFDASRNNLSGVLPSTLGSLDSLLKLDLSNNMLEGKLPKQLGRLKNLTLLDISHNKLRGGLAETLKELAFIKHLVLSNNPLGGDLSGVKWENFLNTETLDLSNIGLEGSVPESMEKMKRLRFLDLSNNNLSGNVSRSLENLTCLGALHVNGNNLTGRLDFSERFYMKMGMRFAAWNNANLCYIVKSKHQVPYGVKPCVQNITISEGFSTVKITEGNHEDSSVVASLGGSASYPLFLCLILFCGVNCTEFEVGGHGGWVVPKTNDDAQMFNQWASQNRFKIDDNLLFKYEKDSVMEVTEEEYEKCLSPHPLFFSNNGETVFKFDRAGLFYFISGVRGHCDRGQKMIIKVLDIEASPSPQYANGTAPKPHSKSGVAELTPMRIMTESTVFVMSTFFLQLYV*


CDS Sequence:
>Vu_06868.1
ATGAACCTCTTAATTGCCAACTTGTTTGGTGGACCTTCCTCTAGGAAATTTCATGCCCAGAAGCTAGACTCTTCATTGACAACAATGAAGAAAAAAGAGAAGGAGGTCATATACTCTGTTATTCAACTGTTTGTGGGAAAGTGGTGGAACGGTTCATATCTTTATCCAGATCCTTGTGGATGGACTCCTATACAGGGAGTTTCCTGTGAGCAATATGATGATGGCTTCTGGTATGTGACTACTGTAAACTTTGGACCAGTTTTTGACAACTCTCACATGTGCAGCCGTGATGCCAAATTCCCTCAACAACTGTTCAATCTGAAGCACCTAAAAGTCCTCTCTCTGTCAAGTTGCTTCCTTTCCCCTACCAAAAATCCTGTTAAGCTCCCTCTTTCAAACTGGGACAAGTTCTCACACAGTTTGGAATCTTTAACACTTAGATCAAACCCTGGTCTTGTTGGAACCATTCCATCAGCAATTGGCAGCCTCAGGAAGCTTCAATCTTTGGTACTGCTGGAAAATGGACTAATAGGTAAACTACCACCAAGTATTAGTAATTTGGTCAGGTTGAGGCAACTAGTCCTTGCAGGAAACTATTTGGTGGGTGAGGTTCCAGACAACTATGGAGGGCTTTCTGAGCTTTTAATATTTGATGCAAGCAGGAACAATCTATCAGGAGTTTTGCCATCAACACTTGGATCTTTGGATTCACTTCTAAAGCTTGATTTGAGTAACAACATGCTTGAGGGAAAGTTGCCAAAGCAGCTGGGAAGGCTAAAGAATCTTACTTTACTTGATATCAGCCATAACAAACTCAGAGGTGGATTGGCTGAGACTCTCAAAGAACTTGCTTTCATAAAGCATTTAGTTTTGTCCAACAACCCTTTAGGGGGTGATCTCTCAGGAGTCAAGTGGGAAAATTTCCTAAACACAGAAACCTTGGATCTTTCTAACATAGGTTTGGAAGGGAGTGTCCCAGAGTCCATGGAAAAAATGAAAAGGCTTAGATTTCTGGACCTCAGCAACAATAATCTCTCTGGAAATGTTTCAAGAAGTTTGGAAAATCTGACATGTCTTGGAGCTCTTCATGTAAATGGAAACAACTTGACTGGGAGACTTGACTTCTCAGAGAGGTTTTACATGAAAATGGGAATGCGCTTTGCTGCTTGGAATAATGCAAATCTCTGTTACATTGTCAAATCAAAGCACCAAGTGCCTTATGGAGTAAAACCTTGTGTGCAGAACATTACTATATCTGAAGGGTTTTCAACTGTCAAAATAACTGAAGGGAATCACGAAGATTCCTCTGTAGTGGCCTCTTTGGGAGGCTCAGCCTCATACCCACTTTTCCTTTGCTTGATTCTTTTCTGTGGCGTCAATTGCACTGAGTTTGAAGTTGGTGGTCATGGAGGTTGGGTTGTCCCGAAGACAAATGATGATGCTCAAATGTTCAATCAATGGGCATCCCAAAACAGATTCAAGATTGACGACAATCTTCTTTTCAAGTACGAGAAAGACTCAGTTATGGAGGTGACTGAAGAAGAATATGAAAAATGTCTATCACCTCATCCCCTCTTTTTCTCCAACAATGGTGAGACTGTGTTCAAGTTTGACAGAGCAGGCTTGTTCTACTTCATCAGTGGTGTTCGTGGTCACTGTGACAGAGGGCAGAAGATGATCATCAAGGTCTTGGATATTGAAGCAAGTCCCTCACCCCAATATGCAAATGGCACTGCACCAAAGCCACATTCAAAAAGTGGAGTTGCTGAACTTACTCCCATGAGGATCATGACAGAGTCCACAGTTTTTGTTATGTCAACCTTCTTCCTTCAGCTTTATGTTTGA


Promoter Sequence:
>Vu_06868::LG1:99606944-99608944(-)
ATTTAATAATATAAATAATTTATAAGTTTTTAATTGATTAATTAATATTTTTAATTAGATAAATTAACATAGTCATTGTTTACCTGCTAAATTATTCTATTATAATTAGTAATTGAATCTTATTTATAAATTTTAATGATTTAAGTTACAATACTATTACATATTTACATCTTAAAATAATATAATATTGAAAATTTAATATTTTAAATTATTTTTACTTTACATTTTAATTAGAAAGAGAGGTTAGTTTGTATCGTCTCACATTTGGTACGTAAATTTAATAAATATATGAGTCATGTTAAAACGGATTGATGAATTGAAAATTTCATTTTGACATGTTTCGATTTGGACAAACTAGTAAATCAACACACTAGCCATGATATGCTTTATCATTCCTAATATCATAATACATCTCGTTAAGTTAAGACAAAATAATCAAAATCAAATTTAGGTCGAATAATATTGAGTTGGGTTTAACTCAAATTACATTGAATTGAGTGAGTTCAATAAGTTCGTTTGGCCTTAATCTTACATTTAAGTTACAAACAATAAAAACAATTTATAAAGATTAATTTTTAATTTAAAATATTTTAATAACTCGTTTAGTTCTAAAAAGTATTTAAAAATTAATAAATATTTTCTTAAGTTAAAGGCGCTTTAATCTAACCATAATCCATATAACTTTAGCAGTTTAACCTTTTTTTTTTAACTGACTCAATTAGGAGATCAACAAAAGAAACATATTTTAAGAGTGGCATGATGATATACAAGACATAAGTGAAATTGCCATTTAGCATTTGTTTTTTGTTCCCTTAATTCCCAACGACCACACTTTTTCAACAATATAATTTCTCATTAAACCAGGCCCTACCCTTTTGCATGTACTTTCAAAACCAAGCTTCTGAAATGAAAATTGATGTCTGGGTAGAGTAGAGAGACCTTAGTCTTGGATGAAGGAATATTGAAAAGGACTTTGGACGGTGACTGAGCTGGCTATAGCTTACAGCTGCATGCAGTTCTGAGTGAGGTGTAGCCAATTTCTGTTTTAGCCCTGTCCTATGCCCTAGGGTGGTCCAAACTTTTCTTTGCAATTGCAACCTTACTTCCATAATTATTGTTATTTGATAATACCAATGAGTAACCAAAATAGAACTTGCTTAGGTTACTTTTCATTTCCTAGTAAGCAATGACAACTTGTCCCAATTTTATCATTTCTGAACAGGAATGAGTTGCTAGAAAAGGAAAAAGAAAATCTTCACTCAAAAAAGAAAAAAGTCAAATGTGGGGTGATTGTAACACTTACTTTTAACCTTTTGAAACTACCTTACAGAATCAAAACCATTAAACATGCTTCCATGTGAGAAACATAACACAATACTTCATAATAATTACTACTTGATAATAGTAGATTGTTGTAATTTGGTGTAAATAGTGTCCATGTATATTGCATATGTGCATGTGACTGATACTCGTGTTTCAGAAGAAGAGTTAAAAACAAGGTACACAACCCAGTTCAACCTTACCCCACTCTAATATTCTGTTTTCAGACATCTCTAGCACCATCCTTGTACAAATTCTTAGAATATGAGTTTATATTTAAATCTCCAAAACACTTCTTTAAGAATTCAACAATAATATGTATCTAGATATTTGTAGATGGTAACAAAGTTTATTAAATGAGTTTTAATACAAATGTTAAAACTTATGCAGAAAATTTAAATATTGAAGTTCTGATTGAGTCACTTGGGCAATGAATGAGAAGGTACCATTATCAGTCTGGCCGTAGTGAGAGAGAGTTGAAAAACTGATATTGATTGAAGTTTATAAATGAGGTGCTTGGAAGTTTGTCCTTCTTTTCTTTCAACCTTTGATATATAAGAACTCAGTTCCGTAGCAAAAGGAGTAGAAGGAAATTATTATAATGTATGATTAGTTGGCTTTTCATATCAGAAAAGCACATGCATTTTGCACTGTAGGCTGAAGAGTTGAACTTCTTAGCT


Gene Sequence:
>Vu_06868(-)
ATGAACCTCTTAATTGCCAACTTGTTTGGTGGACCTTCCTCTAGGAAATTTCATGCCCAGAAGCTAGGTAGTAACTGTAATTGGGTGAAATTACTTTTTCATTAGAACATGTGCTAATAGTTTGGGATAGCTCTTGGTTCAATCACTTTTTCTGCAAAGTAAAAAAACCCCTCTTAATTGCATACACACTTATGCATATATTTTCATTTTATAGTCTCATTTTCAGTCCATTATTGTGATTGCTTTTACTTTCTTTTCTTCCTTGGGAAGTTTTACTAACAAATATATGCTTCGTTTTAGACCCTTCGTTCTCTGTTGCACTGGCACTGAACGTTTTAGTCAGCACTCTGTTGCTGTTTCTGTTTTCTTGCATGTTATTGCTAGTACCATCTTGTGATCCACCCCATATTATACTTAGATTGGCCATGAGTTTTTCCTGTTCCGTTCCTTGAAACTACATATTTTCTTGAGTGGCATTTTCTGCCTTGATACTGAGAATGGCTATGAGATTTTTATCATGGAAGTGCAACTTTGTTCTTTGTTTTCTGTTCATCATTTTGTGTTGTAAGGGCAAAGACTCTTCATTGACAACAATGAAGAAAAAAGAGAAGGAGGTCATATACTCTGTTATTCAACTGTTTGTGGGAAAGTGGTGGAACGGTTCATATCTTTATCCAGATCCTTGTGGATGGACTCCTATACAGGTTTGAAATCTTGAACTTTCAAAGCAAAAAGATCAATTGGATAATGTTTATACCATTGTTTGCTTCCTTTTTCTGTCTGAATCACTTCCAATGTTCAATGGAACAGTACTGTCTTAATTCCAAACTGTTACCACTAAAACAAAGGCTGTGTTTCTATTCAGTGCTCTGACAACTTTAAACTTGAATATTTTGGATTATGTGCAGGGAGTTTCCTGTGAGCAATATGATGATGGCTTCTGGTATGTGACTACTGTAAACTTTGGACCAGTTTTTGACAACTCTCACATGTGCAGCCGTGATGCCAAATTCCCTCAACAACTGTTCAATCTGAAGCACCTAAAAGTCCTCTCTCTGTCAAGTTGCTTCCTTTCCCCTACCAAAAATCCTGTTAAGCTCCCTCTTTCAAACTGGGACAAGTTCTCACACAGTTTGGAATCTTTAACACTTAGATCAAACCCTGGTCTTGTTGGAACCATTCCATCAGCAATTGGCAGCCTCAGGAAGCTTCAATCTTTGGTACTGCTGGAAAATGGACTAATAGGTAAACTACCACCAAGTATTAGTAATTTGGTCAGGTTGAGGCAACTAGTCCTTGCAGGAAACTATTTGGTGGGTGAGGTTCCAGACAACTATGGAGGGCTTTCTGAGCTTTTAATATTTGATGCAAGCAGGAACAATCTATCAGGAGTTTTGCCATCAACACTTGGATCTTTGGATTCACTTCTAAAGCTTGATTTGAGTAACAACATGCTTGAGGGAAAGTTGCCAAAGCAGCTGGGAAGGCTAAAGAATCTTACTTTACTTGATATCAGCCATAACAAACTCAGAGGTGGATTGGCTGAGACTCTCAAAGAACTTGCTTTCATAAAGCATTTAGTTTTGTCCAACAACCCTTTAGGGGGTGATCTCTCAGGAGTCAAGTGGGAAAATTTCCTAAACACAGAAACCTTGGATCTTTCTAACATAGGTTTGGAAGGGAGTGTCCCAGAGTCCATGGAAAAAATGAAAAGGCTTAGATTTCTGGACCTCAGCAACAATAATCTCTCTGGAAATGTTTCAAGAAGTTTGGAAAATCTGACATGTCTTGGAGCTCTTCATGTAAATGGAAACAACTTGACTGGGAGACTTGACTTCTCAGAGAGGTTTTACATGAAAATGGGAATGCGCTTTGCTGCTTGGAATAATGCAAATCTCTGTTACATTGTCAAATCAAAGCACCAAGTGCCTTATGGAGTAAAACCTTGTGTGCAGAACATTACTATATCTGAAGGGTTTTCAACTGTCAAAATAACTGAAGGGAATCACGAAGATTCCTCTGTAGTGGCCTCTTTGGGAGGCTCAGGTTTTTATGGACTTTGGTGGGTTTTCACTGTAAATGGAGTTCTTAATGTTTTCCTGTGGAACATGTTATCTTAGTTCATCAGAGAAAGAAGTAGCTACAATTAACACTGATGTCATCTCTTGCCAAACAAATTTATGACCTCTAATTTCTAATACCTGCATTATGAATTTATGATGGCCCAGAAAATGTACATTCATATTTCCCTAATCAGCATATCTTCACACTCTTAAGTCGAAACTCTCACGCATATTTGATTTAACAACGAACATGCATTCTCCCGAGTTTTTCTTTCTTTTCTGATACGAAAGTAGCTATTTTCATGTTTTGCTGATGTTTTTTTCGTTAACTATATTTTTAATGTTATATAACTTAATTCATAGAGAAAACAAAAAGAAAAAACCTTAATTATAATTTATATCTCTGTATTTAATCAGCTAATTACTCTCAACAACCTTGATCTCCACAAAAAAACAGTTGAGACCAAGTCAAAGAACATTGTTACCCTTTGCTAACAAAGCTCACCCACGACCCCTAGAACGTGCTCCTCAATCCTCTCCCTCTCCCTTGTTAACTGACTTCATTTTTCAACTTTAGGTCTCTTTTTAAGTCCAACGTGACCAACCCTACTATTATAAGAAGAACACTTTCACTCTTTGGCAGCAAGAAAGCACACACTACACTAACGAGAGCATCTTGAAATCCGAATATGGCTGTTCCCTTCAAAGCCTCATACCCACTTTTCCTTTGCTTGATTCTTTTCTGTGGCGTCAATTGCACTGAGTTTGAAGTTGGTGGTCATGGAGGTTGGGTTGTCCCGAAGACAAATGATGATGCTCAAATGTTCAATCAATGGGCATCCCAAAACAGATTCAAGATTGACGACAATCTTCGTAAGTAACACTCCTTAACAACATAAATATGTAACATGCAACAACCATTTAATTTTCTGCATAGTCAGATACATTTCTATGGTTATATTTTGTGTTTAGCAGCAAATGGGTGTGCGTGAATTATTTTCCATTCAAATGTGTTGAAAGAAGCACATGATAACATGGAGTGTTTTTTGTTGTTGAACTTTTGGAATTGTCATAGTTTTCAAGTACGAGAAAGACTCAGTTATGGAGGTGACTGAAGAAGAATATGAAAAATGTCTATCACCTCATCCCCTCTTTTTCTCCAACAATGGTGAGACTGTGTTCAAGTTTGACAGAGCAGGCTTGTTCTACTTCATCAGTGGTGTTCGTGGTCACTGTGACAGAGGGCAGAAGATGATCATCAAGGTCTTGGATATTGAAGCAAGTCCCTCACCCCAATATGCAAATGGCACTGCACCAAAGCCACATTCAAAAAGTGGAGTTGCTGAACTTACTCCCATGAGGATCATGACAGAGTCCACAGTTTTTGTTATGTCAACCTTCTTCCTTCAGCTTTATGTTTGA

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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