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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_06857 LG1 99507639 99508292 PREDICTED: ethylene-responsive transcription factor CRF1-like
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Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/G 99507722 synonymous_variant p.Ser28Ser
A/G 99508011 missense_variant p.Ser125Gly
C/T 99508217 synonymous_variant p.Phe193Phe

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_06857.1
MYAKNTLMENIDSSELSHQSQNQNKNLSLMAIEIDKPYEKRVMKIPKVGKKIEKKFLGVRQRPSGRWIAEIKDSSQKLRLWLGTFDKAEEAALAYDCAARLLRGRNAKTNFPNPGIMNTHEEDYSILGKNPRSYQLLKHAVMKNHALSASLYSTFMPSWKNQIMLRDEHDTLVEETIVCSIPEQGSACCGISFGSSKVYSSVVVAPSFSVSSHDETP*


CDS Sequence:
>Vu_06857.1
ATGTATGCTAAAAATACTCTCATGGAAAACATAGACAGCTCAGAACTTTCACACCAATCTCAAAACCAAAACAAGAATCTTTCCTTGATGGCTATTGAAATAGACAAGCCCTATGAGAAGAGAGTGATGAAGATTCCAAAAGTAGGAAAAAAGATTGAGAAAAAGTTTCTTGGGGTGAGACAAAGACCTTCAGGAAGGTGGATTGCTGAGATCAAGGATTCCTCACAGAAACTAAGGCTTTGGTTAGGAACTTTTGACAAAGCAGAAGAAGCTGCCTTGGCTTATGACTGTGCTGCAAGGCTTCTTAGAGGGAGAAATGCCAAAACAAACTTTCCAAACCCTGGAATCATGAACACTCATGAAGAAGACTACAGCATTTTGGGCAAGAATCCAAGGTCTTACCAACTTCTTAAGCATGCAGTTATGAAGAACCATGCACTTTCAGCATCTCTTTATTCCACATTCATGCCCAGCTGGAAAAACCAGATCATGCTGAGAGATGAACACGACACCCTTGTTGAGGAAACTATAGTTTGTTCCATTCCGGAACAAGGCTCTGCCTGCTGTGGAATTTCTTTCGGAAGTTCTAAGGTTTATTCTTCTGTTGTTGTAGCTCCTTCTTTCAGTGTTTCTTCTCATGATGAAACCCCCTAA


Promoter Sequence:
>Vu_06857::LG1:99505639-99507639(+)
ATCATGATTGAATATTTTGGATATTTATTTTTAAGACCCACATTCAGTTAAAGATACCCTAAAGCATCATAACTTTTATACACAACAAAGAATCGTATCCTTTTGTAATTATTAAAAGTTAAAACTTGTGTTACATTTTAGATAGTTTATTGAAACTTACATGGGCTACACATTTTAATAATTGCATTAGTAGCCTAAGAGATTGAATTTGATTCCAACAATCGATCTTTCGTTACGAGGTTTCTATCAAGAGATGTTAAAACGACTTTAAATTTGTAAATCAACTTCACTCATCACGCATTTCAATTAAATTGAACTATAAAATAATTAATTATTTTAAATATGGAATAGATAGAATCGATTCAATTTGTGATTAAAAGGATTTGTGAATTAATCAATAATTTATTAATAATATTTTTTTATAAGTATTTTATTATAATTATTCATTATTTTAGATTATGTAGATTGACAATTTGATTTTTTAAAATAAATTCAATTTTAAATATTTAATTTATTTATTTATTATATAAATTGAAATTTTAATTTTCAATTAACATTTTTTTTAATAAAATAGATGAATTGTTTGATTATATTATTATAAAAATATATGGATCAAGTTAATCTATTATCTTTAAATGATTTGATTTATCTAATTCATTAATCCATAATAATTTTTTACTCTCTAAAATATAACTCGATGAGAAAAGGAAAATTTGTTTAGTGTATAATTTTAGTTTATCTATAGTCAATACGAGATGTTGAATTGGTACGAGAAACGGAAAGAAAGAAGAAAGAAGACAAAGCAACTTTACTTACAAGGGCAGAAAGCATATGATTTATGTCCCAATTGCATCCTTTATTGCGTCTGTATATTGTATCAGATTTGGTCACTAGCCTTGTTTTATGCAGTATTCGACAAGACATAGTGATACACTTCATTCTCATACGCAGGCTCAACATACTAATCGTTTCGAATGAATTGATTGAGCGTCGGTCGTTTTTTTTTGTTTGATTATTTTTCGACCGTTCAATCTTTTTCGAGAATGTAATTATTTTGATGGGTTGTTGATTTGTAGAAGACATCACTCAATAATATATTTATAGCGGTTGTGACAGCCAAACATATTGATTAACCATTCAGTATATTTTTAACAATCAAACCCAATAATCAATTATTTTAATTTCGTATATTTATAAAGCATAAGGCAATCTAAACCCATTAATACCTACTACAAATGACTATTAACTCCGATAGGGATATTTTATATACTTCGCTAAGGATAATGATATGTCAGTAATTGCAATAGTTTGACAAAAATTAAATATTAGTTTTTAACTATACAAGAGGATTAGCAATAGGCAGATGGTTTTAAAAGAAAATAGAGAAACAAACTTGAGATAATCCAACAGATAAACTACCCACTGATTCATCTGCAGTGCAGCAGAATTGAGAATAAAAGCATACTCGGAAGAACCAACAATGACAACAAAGACATCCATTATGTGACAAATGTTCCATATTAGTTCTTAATTGGAGTCAGAAAGTGAAACCAACACGTGGGTTCTGTTTTTTTTCGGACTTTTGAGGTGTTAACTTTGTTTTTAGGCTGTTGGAGCCTTCCCTCAAGGGTACTTGTTAAGCAAAAACGTCATTTTTCACTTATATTAAAATCACAACAAAACCAACTTATATATATTATTGAACCACGCTTCAGAACCATGCCACATTTAGACGTGTTCATCACAATTTAAAGGAGTAGTTAGAGCAGTGTTTATCAACATCCATGTTTCCAATATGACAGGGATGTCTTTTAAAAAGTATTTCTTTCTGATAAGATTCCATAATTCTTCTCCTTTATTGTTGCTTAATTATTTCTGTATAATAACCTTCGAAGAAGGAAACAAACCCAAATCCGACAAATAGCATGCTATAACCTCATCATCGACATCATTGTTACATCACGGCTTTATTAGTGATCAGTGTTCACCCTCTTCTCATA


Gene Sequence:
>Vu_06857(+)
ATGTATGCTAAAAATACTCTCATGGAAAACATAGACAGCTCAGAACTTTCACACCAATCTCAAAACCAAAACAAGAATCTTTCCTTGATGGCTATTGAAATAGACAAGCCCTATGAGAAGAGAGTGATGAAGATTCCAAAAGTAGGAAAAAAGATTGAGAAAAAGTTTCTTGGGGTGAGACAAAGACCTTCAGGAAGGTGGATTGCTGAGATCAAGGATTCCTCACAGAAACTAAGGCTTTGGTTAGGAACTTTTGACAAAGCAGAAGAAGCTGCCTTGGCTTATGACTGTGCTGCAAGGCTTCTTAGAGGGAGAAATGCCAAAACAAACTTTCCAAACCCTGGAATCATGAACACTCATGAAGAAGACTACAGCATTTTGGGCAAGAATCCAAGGTCTTACCAACTTCTTAAGCATGCAGTTATGAAGAACCATGCACTTTCAGCATCTCTTTATTCCACATTCATGCCCAGCTGGAAAAACCAGATCATGCTGAGAGATGAACACGACACCCTTGTTGAGGAAACTATAGTTTGTTCCATTCCGGAACAAGGCTCTGCCTGCTGTGGAATTTCTTTCGGAAGTTCTAAGGTTTATTCTTCTGTTGTTGTAGCTCCTTCTTTCAGTGTTTCTTCTCATGATGAAACCCCCTAA

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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