Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_06845	LG1	99373836	99374471	PREDICTED: basic leucine zipper 43-like	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	located in	nucleus
Molecular Function	enables	DNA-binding transcription factor activity, DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
A/G	99374041	missense_variant	p.Asn69Ser
C/A	99374092	stop_gained	p.Ser86*
T/C	99374099	synonymous_variant	p.Ser88Ser
A/T	99374126	synonymous_variant	p.Ala97Ala
C/A	99374387	synonymous_variant	p.Ala184Ala
C/T	99374405	synonymous_variant	p.His190His

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_06845.1

MECNEDDELHVAPYASLTQCFHYPSPTQKPIPTSTMETGEGHNLTHLDQPHSLHHFPFFCSQLHLPSNNHDPIKIPLHKPSPNTSSNSNNNNNSDEAKALLDDRKKKRMFSNRESARRSRMRKKQQIEVLQYHVDHLQTLNHQLSQKIIYLLECNQQIHQQNSQLKEKVSSLQVVLSDLLVPAAGAEQPHHIPNGFLAEPSSTRPISSSRT*

CDS Sequence:
>Vu_06845.1

ATGGAATGCAATGAAGATGATGAACTCCATGTAGCCCCTTATGCTTCCTTAACACAGTGCTTTCACTATCCTTCTCCAACCCAGAAACCTATCCCGACCTCAACAATGGAAACTGGTGAAGGCCATAATTTGACCCATCTGGACCAACCTCATAGTTTACACCACTTTCCATTTTTCTGCTCCCAATTGCACCTTCCAAGCAACAACCACGACCCAATTAAAATCCCACTCCATAAACCCTCTCCCAACACATCATCAAACAGTAACAACAATAACAATTCTGATGAAGCAAAGGCTCTCCTTGATGACAGAAAGAAGAAAAGGATGTTCTCCAACAGAGAATCTGCTCGCAGGTCTCGCATGCGAAAGAAACAACAGATTGAAGTCCTGCAGTATCACGTGGATCATCTGCAGACACTAAACCATCAACTCTCCCAAAAGATCATTTACTTGCTTGAATGTAACCAACAAATCCACCAACAGAATTCTCAGCTAAAAGAAAAAGTTTCCTCTCTTCAGGTAGTACTCTCTGACTTGTTGGTTCCTGCAGCCGGTGCAGAACAACCTCACCACATCCCTAATGGCTTCCTAGCCGAGCCTTCTTCAACTAGACCAATTTCAAGTTCCCGAACATAG

Promoter Sequence:
>Vu_06845::LG1:99371836-99373836(+)

AACTTAAATGCCAGAGGATTGAAAATCTTCCCTTGACTGTGAAATCGTTTTTCATCATAGAAGGGAGTCGAAGAGCCTTTGTTTTGAGAGAAAAATGGCTGTTGGATGGGTATTATTTGTTCATGGTTTACCAATTAGTTTTATATATTAATAGTCATTGGATTTTGACAGTTGGCTTCCTGTTCTGGTTTGTTATCCATTCTTCATGTAGCTGAAGTCTTGCTGGCTTTCTTTGTTCTTGAGGAAGAAATTCTTACCTAGATCTCTTTTTCTGATTGGAGTGTGATTTCTAGGATTCGTATGAGTGCTGAGGTTATAATACTAGAGTTCAGCTTTATGCTATCCTTTTATAGTTAAGGACAAGACGGGGTGAGATTTCTACACTATTCCTCAGCCACTATATGATATATTTAGTATTTTCTGTGACTTTCTTGAATGAAGTTACAGTTTAGGACGCACTCAAATTTGGTGCAGTTGCCTGAAAATGGAATAATGAGGAATGCGAAGTTGCATTTTCTTGTGAGAGTAACTTGAAATATGATATTTGTTATTGAAAATATTATTTTGGTTGTAGAAACGTAGGTATTCATTCCTTTCTTTTAGGGGTGTTTTTGTTGAAGATTCATTTGTTAGGAGGAGTGGTCATTCTCACTTCGGTGTAGGTGATTATTGCCACGCACGGCACGCCTATGTAAATTAAATTATAAGATAATTTGTCACGTGAACTCAATATTAGTAATAATAATGACAATGAAGAGCGAAAATTCACTTCAATATCTCCTGCTATTTTTTTCATAATGCTGCATCTGCAAGATATTAGTAATAGGTTTTATCTCAATAAATTGAGCAATAACAAACCTATTCTTTTCTGTTAGCTGTTGGTTAGCATAAATATGTTCAACTTCAGATTAAAGAATTAATTTATATAGTTTATTAAGATGTCTATCTAAATAAATTTCAGTTGGATAAAAACTTGTAAAATGGATGTTAATAGGTTATAAATCCACATATGCTTGGAAGTCAGTGATTTGAAACTCCATGTAACAATGGGATCAAAAGCTGGTGATTTACTATGCACGAGAATACCTATTATAGGCAATATATTAGGCTTTTAATTAGCATCTGCGCTATATAAGCAATGAATAGAGAATACCTATGCCATTGCAAGTATCATACTTGTTATATACGTGTTAACCTTGACATATAAATGTCATCCGTTTAAGCAATATCTCATTGTGATTGCCCACTAAGTAAAAGTGATAGTTTATGATGGAAGATTCCATGGAGACGCCAGATAACCCAATTATTTGATTTGCTTTTCATATAACATTTGACATTTTATTTAATCCAAAGCTTAAAATGCTACTGTAAACAGTGTCTTCAATTTATCAAATCTCCTTAAGTATAAAAAATTATAATGTTTATTGGGTAGAGTGAATTTGTCTACTTTTATTTAATTTGTTGTAACCTAATTTTAGGTTGAAATACATGAAGTAAAATTTTAACGCGCATTGCCATTTTTTCTTGGGTAGAGTATATAATCAAGACCAAAAATAGGAAAAAAGAACTGCAGATAGAGTCCTTAGCCAGCATTTTACTGAATGGGGTATAAAGTTCTGAGCTTATATGGCATAATTTAATTTTCTGGCTCTTTTCTAGGTTAGAGAATCACTAAATTTGCTGCTTTGTATAAATTTTTAGGCATACTTATAATCAAAAAGTCAATGGCATTGCCTTCACAGCCATTAAACCACTTTACTTCTCAGATCTCTGTCTCTAGGTCAATTATATCCCACCATTTTACTGAACAAAACTTATCTGACCATTAGTTGTTATTAATCTTGATCAAATATGTATTCTTAACTTTCCTAGCATCGGCCAAATGTCAAGAAATTCCCATACCTACTCGTGTTCTATCTGCATTAACTATCCAATTCCAATCTATAAAACTTGTAGGTCAGTTAGTTCCGTCTCTCATACTCGAATGAAAAATTGAGACA

Gene Sequence:

>Vu_06845(+)