Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_06838 LG1 99305892 99307390 PREDICTED: dof zinc finger protein DOF5.4 isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
A/C 99305988 3_prime_UTR_variant
T/C 99306004 3_prime_UTR_variant
A/T 99306077 3_prime_UTR_variant
G/A 99306566 missense_variant p.Ala185Val
G/A 99306856 synonymous_variant p.Val88Val

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_06838.1
MQQIHSMAPGTAGGGGGGGARFFSGTASADRRLRPHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSNKPAKTSDAAPPPPPPDPDHSSSESSSLTAAAAEPVSAPINSDSTNMQESKLSVPVDPVLGTNPLEQGAGDCGGIFSEIGPFTSLIATSTNEPLGFGFGNCLPDASSFQWQHSKVSSNQELKLAESSFLDHTVDLSTLHGKTNHGTFGSLDWQGGADQGLFDLPNTVDHAYWSHTHWSDHDNSSLFHLPP*


CDS Sequence:
>Vu_06838.1
ATGCAGCAAATACACTCCATGGCACCAGGAACAGCGGGAGGAGGAGGAGGAGGAGGAGCCAGGTTTTTCTCCGGCACCGCCTCCGCGGACAGGAGGCTCCGACCCCACCACCAGAACCACCAGGCCCTCAAGTGCCCCCGCTGTGACTCCCTCAACACCAAGTTCTGTTACTACAACAACTACAACCTCTCCCAGCCTCGCCACTTCTGCAAAAACTGCCGCCGCTACTGGACCAAGGGCGGCGTCCTCCGCAACGTCCCCGTCGGCGGCGGGTGCCGTAAATCCAAACGCTCCAACAAACCCGCCAAAACCTCCGACGCCGCCCCCCCGCCCCCGCCGCCCGACCCGGACCATTCGAGCAGCGAGAGCTCGAGCCTGACCGCCGCTGCCGCGGAGCCCGTATCGGCGCCGATAAACTCCGATTCCACCAACATGCAAGAGTCGAAGTTGTCGGTCCCCGTGGATCCTGTTTTGGGAACGAATCCTCTGGAGCAGGGAGCAGGGGACTGCGGTGGTATCTTCTCAGAGATTGGACCTTTCACCAGCCTGATCGCTACTTCCACTAACGAGCCCTTGGGTTTCGGTTTCGGCAACTGTCTGCCCGATGCGTCGTCGTTTCAGTGGCAGCACTCGAAGGTGAGCAGCAACCAGGAATTGAAGTTGGCCGAAAGCTCCTTCCTCGATCACACCGTTGATTTGTCGACTCTGCATGGTAAAACCAACCACGGAACATTCGGATCGTTGGATTGGCAGGGCGGTGCGGATCAAGGTTTGTTCGATCTCCCTAACACCGTCGATCACGCTTACTGGAGTCACACTCACTGGTCTGACCACGACAATTCTTCTCTCTTCCATCTCCCCCCCTGA


Promoter Sequence:
>Vu_06838::LG1:99307390-99309390(-)
CAAGGTGTTTAAATAAGACATTTTCTACTTCATTGATATAATTACGAATCTTAATATCATATTAATAATGTCTCAATTAGTATAATGGTATAACAATATAATCTATAATGTAAAGTGAGAATTATAAAATAAATGTGATATGCACACATATAATTGGTTCATTTTTATTTGTATTATTGTAATTACAATAATACATGCTCTGAAAACAAATGATATTACAGACAATAATAACATAAAAAAATGTTAATAGATAATTTAAGCATACTATATATTATTATTTTTAAATAGTTGATGTCATATAATTATCTAATATAGAAATATAGAATTCTCATGTAATTTATTACTAGTCATGTTTAATAAAAATACATATAAAACATACAATTAAGCGTTGTAGGACAAAATTAACATCTTCTGTTAACACATTCTAAAAATATTATTGTATGGGATCGAGTCACCTAAATCTGCACACTTTTTGTTATCTCTGTCCGGTCTTCGTGAGATTCTTTCCTCTGTTTCCCAAAGTTCGTCCGTTCTGTCCGTTTGGGAGGGTACCTGTCAAAGGTGCTATGATGCTTAAGTCAATAATGGTCTGATAGCTAGTTTAAACGCTGCAATGAATGCGTAATTAATGAATATGCCTACCTCTTACCTTTAACATGTATTTATAGTTTTGGTCATGGGTCTTGGATTAGCAAAGCCTTAATTACGGGCCAATCCAGAGCCCAATCCTTTAACCAATGTTTTACCTTAATCATGTCTGAAGACTTATCTATCATAATCGTCCAGTCCTGGGTGTTTGAGAAATACCGTCCGTCCTAGATGTTTGTTGGGTGTCGTCCAGGATCATCTAGTACAAATATTAATATAAAACTACAAACAACAAAAAAACATAACATACTTATTAATTTAAAACTAAAATGTATCACTCAATTTTATTGAAAAATCATTGAATTTGATATCAAGACATATCGATATTAAATATTATTTTTAGTACAATAGAATATTGAAATAATTTAACAGTAACAATGTCATAATCAATATGCTGTTCTTAATATAAATTCAATTATTAATTTCAACATCACTTACCTGTTACGAAAAAAATAATAATAATTTAAATTCCACAATAAAATTTATGCCAATAAAAAATATTAGTATAATGTACGAGTTATTAAATTTCTAGCGTACATCTATGACATATCTTATTAACATTAAACTAAAAAAGTAAGTATACACTAACAAATACTTTTAAATTTCATTAATGTATATACTTGTTATTGGAGTGTGTCGGTATTTTCTAATTAAAAATGATCTAAAAATACATATATTTATACGGTCCAAGAGAGGTGAAAATAAGATTACTATTTGGTTTTGGTTAAAAATAACCATATTTTTATGGAAAAACCTTAGTTTATCAATAATGTAGTAACTAACACCAATTATTTAAAAAAAAATACACTTTAGTTTTTCAATAGAGGAAGAGACGGAAACTTTGGATTTAAATAGTTTAAATAGAAAACAGTACTTGAATTTTGTCAAAATAATTGTTTAACATATGTTTTTAAAAGTATATTGATAATCACTGTCTTAAATTAATTGATTTATATAAGAATAATGTGGTAATAATTACCAGATACTTTCACGAAATAAATAATTATAAAATAAGAAAAATGCAATTATCCATTCCAATCTGTCACGTAATATTTAACCAAGTTATATGAGGCAAATATACGGTTTCCAAATTTGTAGAGGGATAAGTAGGTTTGGTATATAAACTTAGTAATATGCATATTATATGGTTTTAATTATGGTGTGAGTTATGTTATAATTGAGAGAGTTATAGAGAATAAATATGAATTTATTAAAGATCTTAGGCGTATTAAAAAGTGCGTGGGTTGGGCTGCGAAAGTAGTTACGGCTATGTTATAGGGCTTGTTGGGTCAATTCACCTTCGGTCGAAATCCCGAAAGATATCATAACATAACATAAACATTACAACTCAC


Gene Sequence:
>Vu_06838(-)
TAGATAGACACAGATGTAAGTAAGTAATATAGAGAGCTCAGAAGGACATAGTTGCAGAGTGCAGGCATATTTGTCACTCTCTCAAACGCCGTTCTCATTCCGCATCCCAATTCTCTTATCTCTTCTCTCTCTGTTTTTTCTTCTCCGTACTCTCTCCACACAGACACATGTGTGTTTACTCAACGACCACAACACCAACACACTCGCTGACATAAACACTGCTTTCAGGTGCATCTAATCAAATCTTCTCCCTCCCATCTAACTCCACCAAATGCAGCAAATACACTCCATGGCACCAGGAACAGCGGGAGGAGGAGGAGGAGGAGGAGCCAGGTTTTTCTCCGGCACCGCCTCCGCGGACAGGAGGCTCCGACCCCACCACCAGAACCACCAGGCCCTCAAGTGCCCCCGCTGTGACTCCCTCAACACCAAGTTCTGTTACTACAACAACTACAACCTCTCCCAGCCTCGCCACTTCTGCAAAAACTGCCGCCGCTACTGGACCAAGGGCGGCGTCCTCCGCAACGTCCCCGTCGGCGGCGGGTGCCGTAAATCCAAACGCTCCAACAAACCCGCCAAAACCTCCGACGCCGCCCCCCCGCCCCCGCCGCCCGACCCGGACCATTCGAGCAGCGAGAGCTCGAGCCTGACCGCCGCTGCCGCGGAGCCCGTATCGGCGCCGATAAACTCCGATTCCACCAACATGCAAGAGTCGAAGTTGTCGGTCCCCGTGGATCCTGTTTTGGGAACGAATCCTCTGGAGCAGGGAGCAGGGGACTGCGGTGGTATCTTCTCAGAGATTGGACCTTTCACCAGCCTGATCGCTACTTCCACTAACGAGCCCTTGGGTTTCGGTTTCGGCAACTGTCTGCCCGATGCGTCGTCGTTTCAGTGGCAGCACTCGAAGGTGAGCAGCAACCAGGAATTGAAGTTGGCCGAAAGCTCCTTCCTCGATCACACCGTTGATTTGTCGACTCTGCATGGTAAAACCAACCACGGAACATTCGGATCGTTGGATTGGCAGGGCGGTGCGGATCAAGGTTTGTTCGATCTCCCTAACACCGTCGATCACGCTTACTGGAGTCACACTCACTGGTCTGACCACGACAATTCTTCTCTCTTCCATCTCCCCCCCTGAAAACGGCTCCACTCCTTCACAAATCTCATCTCACCTTTTGTTTTTTTTAATCTCTTATATAATTTAACTCTAAAGGAGGGCAAAGGATATTTGAAACCAAACTCAAAGTAAAAAAAAATCCAAAGCGAAGGTGGAAGGACTTGATATAATTAATTACGAGGTGTATATTTTTTTTTAATTTATAAATTTGGGGGGTGATTGAGCTTGATTCTAATCAGTGATGTGCATGCACAACTAATTCCATGTTAATTTCTATCTGATTTTTCTTTTTCCTTTGTTTGATGTGATCACGTTTTAATATATGTTTGTGGAATTTGATTGATTAACAGAGAATTATAGCAGAGTGTTTTAATACGGAGCG