Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_06830 LG1 99204752 99208112 PREDICTED: squamosa promoter-binding-like protein 6 isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of gene expression, defense response to bacterium, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, defense response to bacterium, defense response to bacterium
Cellular Component   located in   nucleus
Molecular Function   enables   protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
T/C 99205149 synonymous_variant p.Pro419Pro
G/T 99205236 missense_variant p.Ser390Arg
T/C 99205238 missense_variant p.Ser390Gly
A/T 99205241 missense_variant p.Tyr389Asn
G/A 99205721 downstream_gene_variant
G/T 99205771 downstream_gene_variant
G/T 99206161 downstream_gene_variant
C/A 99206822 downstream_gene_variant
A/C 99206823 downstream_gene_variant
A/T,* 99207333 downstream_gene_variant
C/T 99207617 missense_variant p.Gly166Arg
G/A 99207637 missense_variant p.Pro159Leu
C/T 99207680 missense_variant p.Gly145Arg
C/T 99207723 synonymous_variant p.Leu130Leu

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_06830.1
MESWSFVPEEKESVSNEALSPPNTLGRTINSFLGWELKTPCGFSNDMLGLGQHPIENQGFEELGFPEMLGKHLSDDLIASVSSRKVDAGRHQQHQHSDRITGTVVDAPSGFSQRGDSNSKLSNSNSLIDLKLGRFADHGDAIDAGFSKVLSSSESSTPPKRVRVSGVHSQTAYCQVYGCNKDLSSCKDYHKRHKVCEVHSKTATVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQMGIHPGKSGRLLQPCGDSRFQGSMLTSSFIRPEMLPSGVMCSEKYGVSSFWRPIKAEQGASFRHLSSMPVSNGHPQSRSLFPSYNGKQFPFLHENCATSTTGSIFCESNSHYPHALGAQNSGLRPLFQDTIGNEDFNVFDTASTVQGLSGISDSCCALSLLSSQSQNSSSQSSGIPLTHSMVIPSGHGHHYNMSQVSEKIGISSQTCSSRVSDSFPSELNHADGSHLSPVLISDHNDIVNFDMADGIFHGSEFMNVKDRLPCEDGATIDLLQLSSQLQRVEHERQSLQVKQENDSSCTLRIT*


CDS Sequence:
>Vu_06830.1
ATGGAATCTTGGAGCTTTGTCCCTGAAGAAAAGGAGAGTGTCTCCAATGAGGCACTATCCCCTCCCAACACTCTCGGGAGGACCATAAATTCTTTCTTGGGCTGGGAACTAAAAACCCCATGTGGTTTTTCCAACGACATGTTGGGTTTGGGTCAGCACCCCATTGAGAATCAAGGTTTTGAGGAATTGGGTTTTCCTGAAATGTTGGGCAAACACTTGTCCGATGATCTAATTGCCAGTGTTTCAAGCAGAAAGGTGGATGCTGGTAGGCATCAACAACACCAACACAGTGACAGAATCACTGGAACTGTTGTGGATGCCCCAAGTGGCTTTTCTCAAAGAGGGGACTCAAATTCCAAGCTTTCAAACTCAAATTCCCTCATTGATTTGAAACTGGGTCGATTTGCTGACCATGGAGATGCCATTGATGCGGGGTTTTCCAAAGTTTTGTCTTCTTCTGAGTCATCAACGCCTCCCAAGAGAGTGAGAGTTTCGGGGGTTCACTCTCAGACTGCTTATTGCCAAGTCTATGGCTGTAACAAGGATCTCAGCTCCTGCAAAGATTACCACAAGAGGCACAAGGTGTGTGAGGTTCACTCCAAGACTGCTACCGTTATAGTCAATGGTATTGAGCAAAGGTTTTGCCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGAAGCTGCCGTAAACGCCTTGCAGGTCATAATGAGCGTAGAAGAAAGCCACAAATGGGGATTCACCCCGGAAAGTCTGGGAGGTTGCTTCAGCCATGTGGGGATAGCAGATTCCAGGGATCCATGCTAACATCATCCTTTATCCGCCCAGAGATGCTTCCTAGTGGGGTCATGTGTTCTGAGAAATATGGTGTGAGTAGCTTCTGGAGACCTATCAAAGCAGAACAGGGGGCTAGTTTTAGGCATCTTTCTTCTATGCCTGTATCCAATGGACATCCTCAGTCAAGATCTTTGTTCCCATCATATAACGGAAAACAATTTCCTTTTCTTCATGAAAATTGTGCAACGTCCACCACAGGAAGCATCTTCTGTGAGAGCAATAGCCACTATCCACATGCCCTTGGGGCACAAAATTCTGGGTTAAGACCACTATTCCAGGACACCATAGGAAATGAGGACTTCAATGTTTTTGATACAGCATCAACTGTTCAAGGATTATCGGGGATTTCAGACTCTTGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCAAGCCAATCATCAGGAATTCCCTTGACTCACTCCATGGTTATTCCAAGCGGTCATGGCCATCACTACAACATGAGTCAGGTCTCTGAAAAGATAGGAATAAGCTCACAGACTTGTTCAAGCCGAGTGTCAGATAGTTTTCCTTCAGAACTAAATCATGCAGATGGAAGTCATCTCAGTCCTGTGTTAATATCAGACCACAATGATATTGTAAACTTTGATATGGCAGATGGTATATTCCATGGTTCAGAATTCATGAATGTGAAGGATCGACTTCCCTGCGAAGATGGTGCAACCATAGACTTGCTACAATTGTCATCACAGCTTCAGCGAGTTGAGCATGAGAGGCAATCCTTGCAGGTGAAGCAAGAGAATGATTCTTCTTGCACTCTGCGGATTACATAA


Promoter Sequence:
>Vu_06830::LG1:99208112-99210112(-)
TATATTAACCGACTCAAATTTAGCGGAAAAATAGTGTTTTTTGTTTTAAAAAATTTAAGGATGTCTTGTAATGTACGTGTTCGTGATTTATGTTTTCCTTATATGGGAGCTGAAGATAATAGGTAGCTGAGAGGCGTGAAAGAAAATTAGTGAAACATAGTGCAAAGAAAAATAGATGAACAGTGGATGTGTTATTTTTGAAGATAAAGTTGGAGTTTGGAAAAAGACATGTAATTTTCCCGTTTTCCGTTTTCCGTTTTCGGAGAGGGAACGGGGGTGCTTGTGGGAATATTGTTTTGACGAGGGATAGGAAGTGTTGCGTTGCGTTCCATTCCGTGGTGGAGCCTGCTTCGCATGTCACTCTCATCCCAAGAGCGTGCTGCCACGCGCGCAACAAGTTAAAGATAATGAATGAAAGAACACGTGTCAGAAAAGGGGTAAATGAGAAAAATGGGTCCTGTCTAATAGATCCCAACATATTAACTCCATGCTGAGTTGCCATTCACACTGCATCAACACCTTCTATCTTTCTTTCTCTCCCAACTTCTTATCATTTTCTTTTATATTTCTTTTATTGCACACGCACTGTGTTGTAAATTGTTCATATTAATTAAACTTACAAGATTTTTATTTAACTTGTTTGAAATATCTAGCTTCAAACAGTAGTGGTAATGATCACAAAAATACATCTTTTCTTTTTTTTTGTAAAATTTCAAAGTGAGTAATAAATAAACCGTGAATTGGATATACTCGGTCAAAGGTGTGAAATAAATGAAGGCTGGATATAGAACTGATTCCAAACAGGTGAAGGCTTTCGGAGAAACAGTGTTGTTTCTTATTTTTGAACATTTTAAAAGTTTTTTAATTAATGTACCAAGAAAATGCTTTAACTATCTAAATTCTATATGAAAAAAATCTTAGGAACAGTTACTGTTGAGCTTTTGGTACTGTTTTGAACTTTGAAAGAAATGTGATACAAATTTAATTTTTTTATTGAAGTAATTTTCCTTGATGCAGTTAGCAGTAAAACATTTCTGAGCTTAACACATGAAAGAAAACTGAAAACCAGTTAAAAAAAACTGTAATTAGTTTTATGGGACATTTTCTTTAAGCTGATTTATCTTACCGTTGAATAACTGAGAATCCTTGACAATTGATTGAATCGAAGAATAGAAATGAATGTAATTGATTTAGGTAATGTGATTTAATGATGGAAATGATTGAATTTGGTTTGCATTTGATAGAATAGAAAAAGAAGAAATTTAAAAGTGAAAAAAAATGTAATATATGTTTAAAATAAAAGGGAAGAGGAGAAGAATGTCTCTCTTTCTCTGAACTTAGGTACGTGTGAATGGCTGCTAGCTAGCATGGTGGAAAGCTGTCCACTCTCATTGTCTTTCTCTAAAAATAGCAACTCAGAATTCCAATCTCTTGAATTTTCTATTCCAGTTGAGTAAATCATCTTTCCACTTCACTCCACTTTACTTCCATCTTCCACTGTTTGCAAACTCTCTCTCAAACACTGCCTTTCCTTTTCTCGCTCCCTCTTTCTCTTTCAGTATACTTTTCCCGATTCTCTATTTTTCCCTCCTTCGACTCTGCTTCAGCAACCGCGCACCCTCTTTGTCTTCACCATATTCACCTATTTGTTTTCTTCTACGTTTCTTTCCCTCTTCTTTTCACGCGCTCTTCTCACTCCTTGTCCCTTTCTGCTTCTTCTCTCGCGGCTTCTTCTTTCCTTCTTTAATCCGTTTGGTTTCTCCAAAATCGAAGACCTTCATGTCTTTAGGAGAGTAAATTCATTGTCTTTCTTTGTTGGGTAATGTAAAATAATGCTTTTTCAGTGGCTACCTTTCTGCTCAACTCAGGCAACATGACCCCAAATTCCAGCTCTGCCTGGTCATAGCCAATTAGGAACACTGTTCGGATACTATTTAAGAGTCAATTGTTGTTTGGTCCTGTCTAATTGTCTTGCACCTACCCTGGTTCTTTTGCATGTG


Gene Sequence:
>Vu_06830(-)
ATGGAATCTTGGAGCTTTGTCCCTGAAGAAAAGGAGAGTGTCTCCAATGAGGCACTATCCCCTCCCAACACTCTCGGGAGGACCATAAATTCTTTCTTGGGCTGGGAACTAAAAACCCCATGTGGTTTTTCCAACGACATGTTGGGTTTGGGTCAGCACCCCATTGAGAATCAAGGTTTTGAGGAATTGGGTTTTCCTGAAATGTTGGGCAAACACTTGTCCGATGATCTAATTGCCAGTGTTTCAAGCAGAAAGGTGGATGCTGGTAGGCATCAACAACACCAACACAGTGACAGAATCACTGGAACTGTTGTGGATGCCCCAAGTGGCTTTTCTCAAAGAGGGGACTCAAATTCCAAGCTTTCAAACTCAAATTCCCTCATTGATTTGAAACTGGGTCGATTTGCTGACCATGGAGATGCCATTGATGCGGGGTTTTCCAAAGTTTTGTCTTCTTCTGAGTCATCAACGCCTCCCAAGAGAGTGAGAGTTTCGGGGGTTCACTCTCAGACTGCTTATTGCCAAGTCTATGGCTGTAACAAGGATCTCAGCTCCTGCAAAGATTACCACAAGAGGCACAAGGTGTGTGAGGTTCACTCCAAGACTGCTACCGTTATAGTCAATGGTATTGAGCAAAGGTTTTGCCAGCAATGTAGTAGGTTGGTCAAGTTTTCAACCTTTCATCTTACATTTCCAAGCTGCTAAATATCTATTACTATGACTTGTCTCTTTTTGGTGCCCATTTGAATACCGAACATGACTCTTTACCAACTCAATTGTATGTCATATTGGTTTTAGAGGCTTTATCTGCTATGGCTTGCATCATTTTCCTTTTCCCCTTTAGATATGGTCAAGGTTACCAGTTTGGCTACTTCATAATGGGCAAGTTTGAAATGAGAAGCTGTGTTGTTGAGATATATAGTTTTGTTGTAATGTTTAGTATATGATCCAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGAAGCTGCCGTAAACGCCTTGCAGGTCATAATGAGCGTAGAAGAAAGCCACAAATGGGGATTCACCCCGGAAAGTCTGGGAGGTTGCTTCAGCCATGTGGGGGTAATGATACATATTCTTAAAATAGTTCATGATATAACTCTCCTCTCTCCTGCACTTCCCTTTTCTCTTAAATTCCCATCTTACTTTTGGTCACATGCACATTCAACCTCGCATTCTTCATTGATTAAATTTCATGTGATTGGCTGATTAATTATATCTCTGTTGGCACTAAAAAATATAGAAGCACGCCTTTGAAAAGGTGGTTTCTTTTCCTTGTCCATTTATACCTTTTCAAAGGCTTCATGTAATAATCGTCCATACAGCCTCAGAAATGATTCAAAGTTTTTGTTCGCCTTTCTGTTTTACTTCTCAACTTTGATTCCCCTCCATACTGTGGTACATTTGTCATACAGTTTTCTGTCAGATTTCATTTTGATGTCAGTGTCATTATTAACTCTTTGTGTTTAAACGGCCACACTTCAAAACATGTAATGTGGTCCAACTTATATTATATTCTAGAGGTAATCTGCTAATTGGTATCTCGCATTGTCACCCACCCAACTGAATAAATGTGAATTTTCAAATGTTGATTTACCCAATGAATATATATCCATAAGATATGAATTGCCATCTCATAGCCCCATCTGTTTGAAAATGTTTATTCTTCGTTTATTTTCGGTTTTGACCTTGTGTAAACTAACTTTTATTTTTGGGGTACGTTGTCTAAACTAGTTTTAAGTTGGACTCTTTTGTTAGCAAATGCTAAGTGACTTGTTCAACAAAAGATTGGTCTTATCTCTTAAGGGGAAATGTCCTTCAACTAGGTGAGGTTGATTATATGGACCACGCAATGTCTTTAGACTTTGAAACCAAAATTTCGTATATGTTATTTACCATGAGATCTCTGTTGACAAATTCTCCTCTGTCCTTCTTGGTCCACCTCTCCTCCTTCCCGTGACTAGAAACCATGCAATCTAAACTTCTCATTAGTCATTAACATGTCTGATTGTAAACAGCATGAAGCCTAATCAACCGGAAATAACTTGAGTTTTTATCCCATATACTAACCTTAATATTCTATGATATAGCTCAACTGTTGCCACTCATGTTCTGCTTCTAATTAAAAAAGGCGAAAAAGAGACGAAGCAGTGAGAGAGTTTTTGTACGTTATTGTTTTTACATTTTTTTTTAATTGCTTCATGGAATGAAACAAACTTCTTCCACTCATTTGTGCTAGAACATCATAGGTGTGTTACAAAATTTCTAGTTTTAATATTCAGAAACTCTTGAATTGCTATTCTTGTTCCTTAATCGTACTTTGAACTGTTTCGTTTACTCGTAATAGTTAATATTAGATGGGTTCACGACTCTTGCAAGAACTGATTCCCTTGAGGCCAGTTTTGTCTACTTTTATTATAGTCATCTGATATTATTAAAGTTGTTTGAATTTGATAAGGATCATGTGGTTGCAGATAGCAGATTCCAGGGATCCATGCTAACATCATCCTTTATCCGCCCAGAGATGCTTCCTAGTGGGGTCATGTGTTCTGAGAAATATGGTGTGAGTAGCTTCTGGAGACCTATCAAAGCAGAACAGGGGGCTAGTTTTAGGCATCTTTCTTCTATGCCTGTATCCAATGGACATCCTCAGTCAAGATCTTTGTTCCCATCATATAACGGAAAACAATTTCCTTTTCTTCATGAAAATTGTGCAACGTCCACCACAGGAAGCATCTTCTGTGAGAGCAATAGCCACTATCCACATGCCCTTGGGGCACAAAATTCTGGGTTAAGACCACTATTCCAGGACACCATAGGAAATGAGGACTTCAATGTTTTTGATACAGCATCAACTGTTCAAGGATTATCGGGGATTTCAGACTCTTGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCAAGCCAATCATCAGGAATTCCCTTGACTCACTCCATGGTTATTCCAAGCGGTCATGGCCATCACTACAACATGAGTCAGGTCTCTGAAAAGATAGGAATAAGCTCACAGACTTGTTCAAGCCGAGTGTCAGATAGTTTTCCTTCAGAACTAAATCATGCAGATGGAAGTCATCTCAGTCCTGTGTTAATATCAGACCACAATGATATTGTAAACTTTGATATGGCAGATGGTATATTCCATGGTTCAGAATTCATGAATGTGAAGGATCGACTTCCCTGCGAAGATGGTGCAACCATAGACTTGCTACAATTGTCATCACAGCTTCAGCGAGTTGAGCATGAGAGGCAATCCTTGCAGGTGAAGCAAGAGAATGATTCTTCTTGCACTCTGCGGATTACATAA