Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_06821	LG1	99112382	99113476	PREDICTED: transcription factor TCP5	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, positive regulation of development, heterochronic, response to heat, leaf development, leaf senescence, leaf senescence, leaf development, regulation of transcription, DNA-templated, leaf development, response to heat, regulation of transcription, DNA-templated, leaf development, cell differentiation, leaf morphogenesis, leaf morphogenesis, regulation of transcription, DNA-templated
Cellular Component	is active in	nucleus
Cellular Component	located in	nucleus
Molecular Function	enables	protein binding, protein binding, sequence-specific DNA binding, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, protein binding, protein binding, protein binding, DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
T/A	99113069	missense_variant	p.Leu230Met
A/G	99113183	missense_variant	p.Ser268Gly

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_06821.1

MMNESSSKVQQGNQQEGENIKIEKLSKAASTSRSWSAFRNPRIVRVSRSLGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLNQPSKVVDWLLEVTKSDIDKLPPLQFPHCFAQFHQQTPLSGTSQFSLGSLYDGVNSSFLKDGGNQNLMTKSTRYWDLDSQNRTELAESVSTSQKGKFWIKPNELENHQNGIVGVSTRNREESSAHCKVFPLGTNSSYLPGLSNNAITHNSYHHSEPSTLSLSHLGSHELFPSHPSSGSSVQFSSSNFCGASGPQLLFCPPSATPSAFYSVESDPRQSNSVQIFSSSSQVMMPHPLIQSIHSTTSPLRRLPTSLSSKLFDSDNSDRSQQGKGSTRS*

CDS Sequence:
>Vu_06821.1

ATGATGAATGAAAGTTCAAGTAAAGTTCAGCAAGGCAATCAACAAGAGGGCGAGAACATTAAAATTGAAAAGTTGTCAAAGGCAGCCTCCACCTCAAGATCATGGTCAGCATTCAGAAACCCAAGAATTGTACGAGTGTCTCGTTCTTTGGGAGGAAAAGATAGGCACAGCAAGGTTTGCACCATTAGGGGACTGAGGGACCGAAGGATTAGACTGTCTGTGCCAACAGCAATTCAGTTATATGATCTTCAAGACAAGCTTGGACTGAACCAACCTAGCAAGGTGGTAGATTGGTTGCTTGAAGTCACCAAATCTGATATTGATAAACTCCCACCACTTCAATTTCCTCACTGTTTTGCTCAGTTTCACCAACAAACTCCACTGTCAGGTACCTCTCAGTTCTCTCTTGGAAGCTTGTATGATGGTGTTAATTCCTCTTTTTTAAAGGATGGGGGAAACCAAAACCTCATGACAAAGTCAACAAGGTATTGGGATTTAGATTCTCAAAACCGTACGGAGTTAGCTGAAAGTGTCTCAACCTCCCAGAAGGGCAAGTTCTGGATCAAACCAAATGAACTAGAAAATCATCAAAATGGAATTGTTGGTGTTAGTACTCGCAATAGAGAAGAATCTTCAGCTCATTGTAAGGTCTTCCCCCTTGGGACTAATAGCTCTTATTTACCTGGTTTGTCAAACAATGCCATCACACATAACTCCTACCATCATTCTGAACCTTCAACTCTATCTTTATCCCACCTTGGAAGCCATGAATTATTTCCTTCCCATCCAAGCAGTGGCAGTAGTGTGCAATTTTCATCTTCTAATTTCTGTGGAGCATCTGGTCCCCAATTACTTTTTTGTCCACCTTCTGCTACACCATCTGCTTTTTACTCGGTGGAAAGCGATCCAAGACAATCCAACAGTGTTCAGATCTTTAGCTCAAGTTCCCAAGTCATGATGCCTCATCCTCTCATCCAATCTATTCATTCCACCACTTCACCTCTTAGACGCCTTCCAACATCTTTAAGTTCCAAGCTTTTTGATTCAGATAATAGCGATCGTAGCCAACAAGGTAAGGGCAGTACTCGTTCTTGA

Promoter Sequence:
>Vu_06821::LG1:99110382-99112382(+)

TATGGGTACGTAGTTAAGATTTGAAATCAAAGGTTCTAATTTAGAAAAGAGGAATTTAAATGTAATTACAGTTAGATTTTTTTTTTCATGTATACAAATTAAACACATATCAAAGAGTATAGAATAATTTATGCAACCCTTAACCAACAAAACTAGAATACTTCCACAATTAAAGTACCAGTTCAGAATTTTAAATTTTGACATAAAAATAAACTTTAACACAGACAAATATTATCGTAAAAAGGAACAATTAATCATTTCAAATTTTCAAAATATAATACATAAATAACAATGTCACGTATCATAAATAATAAAAATGATTAAAACGCCTTTACAATTAAAAAAAAATAGAACTGAAATTTATAATGCAAGAGACGATTAAAACTACATCGTATATATAGTTTCCTAACAATTTATGTTATAAATTTGTTTATTTTCTTAAATATGACAAGGAATTTAGTAAGTTTAATAAAAATAACGAATATCCCAAACAAAAAAATGTTAATTGCATTTAAAATATTGACCATACAAATTAAGAGCTCCATATTTTTGTGTCTACATTTTTAAGAAATTTTTGTTTAAAATGTATTGTTGCTGATGCTTTTTTTATTTATTATTAAAATAGAACTAAAAATAGTAAATGGATTAATAAAGGTACAATATTAAATATTTTTCCTAACTTTTCATTGTCAGTCCTGTTGGGCTAGCCGGCACAGGCAAACCTAAATTAGTCCGACACTGAAGCTATCTATGATTAATAACTATGAAAAACCTCTTGTATATGTATAAGATAATAACTAAGAGAAAACCTCTTATATATATATATATATATATATATAATATATATATATATATATTCTGTATTCAGTGTTTTAAATTTTAGTGAACTATTAATTTAGTCATCAAGTTAATTTAAAAAAAAGATATAAATATCTGATATTCACCTTCAAAAAGAATACAGAAAGTGTAAATTTTGCAGTCTTTTTGTAATTTTAAAGGAGTAACTAAGCGATAAACAGTTTGAAAAAAGTAATGTAATTAGAGTGGAAGTTTGAATAAGTTAATAATTAAGAGTTGAGTTTGATTAAGAGTGATTATTAATTAAGGCAGAGGCTAATATTAATTGCTGATGAGCATGTGGTGCAAAGAGATTGAGAAAGTCAAGAGAAGCAATGGTTGACGTGCCACTTGACAAGGATGCCACATGGTGAAGGTGAACTAATTCTTCTTCTTCTTATTATTATTATTAATTTTGACATTTACACCCATATGATGCTGTAAAATGCTAACCTTTTCTTTACAAAAATTCTCAATTCGATGCAACATTATTATTCCTTTGCAGCAAAAAAAAGGCTGAAGTCGAAACTTGAGGTCATCTGCTCCACTAGTTAACATTGAAGATTTGTACGAAGTTTCTACTTCTGCAGTCTCCTCCATTTCTTCTATGCTCAAAACCTTATATCCACACTTTCCTCTCTCACGTAAGTTCATCTTCTTATCTCACTACTCACACTCATGCTTCTAATCTTTTCACTCAAAACCTAACCATGCATGTCTCAATTTTTCCTCCAAACTCATCTTTCTGCCTTAGATTCACTTTCATAACACTATCAATTGACTCAGTAGAGTTCTCTTTGCCCTAGTTTTCGACCACTATAATTTCAGTGCTCTTGTACAATTGGTAAAGCTGATTTCAGTGTTGAACTTTTTACACTATCTTCTTGTTTCTTTCTGACCCATGATTTTGGCTCTCTAATTTTTTAATCTATTCTGGGATGTTTTCCAGTCAAGTAAGCAACAAGTTTAGCACATATAGTTTTGCTGTAAACGTATACTTAAAAACTGCGCAGTAAGAAAAAAAAAAGTTTTCTGATATTATAACTTTTTCCTTTCCTCTTGTTTATCAGATCGGGGTTAGTCGGTTGCAGTGCATGATATCGAAAAGGTTGATCTTATTGTATGATATTATCAAGAAGAAAATGATGAGATTATAAGAAACA

Gene Sequence:

>Vu_06821(+)