Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_06761 LG1 98584941 98588111 PREDICTED: cyclic dof factor 3-like isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus
Molecular Function   enables   protein binding, DNA-binding transcription factor activity, protein binding, protein binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, DNA binding, protein binding
SNP Position Effect Amino acid change
G/T 98585013 5_prime_UTR_variant
C/T 98585122 synonymous_variant p.Asp32Asp
C/T 98585240 intron_variant
T/A 98585346 intron_variant
A/T 98585697 intron_variant
T/G 98585722 intron_variant
A/G 98585774 intron_variant
C/G 98585941 intron_variant
C/A 98586029 intron_variant
C/T 98586110 intron_variant
A/T 98586114 intron_variant
A/G 98586406 intron_variant
C/G 98586462 missense_variant p.Thr54Ser
A/T 98586805 synonymous_variant p.Ala168Ala
G/C 98586844 synonymous_variant p.Arg181Arg
T/C 98586952 synonymous_variant p.Asp217Asp
C/A 98587248 missense_variant p.Pro316His
A/T 98587480 synonymous_variant p.Pro393Pro
G/T 98587487 missense_variant p.Gly396Trp
A/T 98587716 3_prime_UTR_variant
T/C 98587766 3_prime_UTR_variant
C/T 98588021 3_prime_UTR_variant
G/A 98588107 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_06761.1
MHEIRDPAIRLFGQKIPFPEDVDIEEEEEEEDESGDGKEEEKEEDKDAGVENVTEEDLEADPSPSAGETKDSGTSPEAIVNPKTPSIEEETAKSKADKSEKEQGDAANSQEKTLKKPDKVLPCPRCKSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSASHYRHISISEALQAARIDSPNGTHLPPLKGNGRVLSFGLDAHAPICDSMASVLNLGEKKVPDSTTNGFQHGFEDQRLPIPRKSGENGDDSSNTSSITVSNSMGESSKSTFQPQPVLQHHGFLPQLPCVPWPYTWNSPVPPPALCPSGYALSFYPPATFWNCGMPGNWNVPWFSSLSSASNPNSPGSAPNSPTLGKHSRDGDMIKQDSLHKEEASRPRNGGVLVPKTLRIDDPNEAAKSSIWATLGIKNESVSGAGMFKAFQSKKEEKNHVEASPVLMANPAALSRSLNFHENS*


CDS Sequence:
>Vu_06761.1
ATGCACGAAATTAGAGATCCTGCAATTAGGCTCTTCGGCCAGAAGATCCCCTTCCCTGAAGATGTTGACATAGAAGAAGAAGAAGAGGAAGAAGACGAGAGTGGTGATGGAAAAGAGGAAGAGAAAGAAGAGGATAAGGATGCTGGAGTTGAAAATGTTACTGAGGAAGACCTAGAAGCTGATCCTTCTCCGAGTGCAGGAGAGACTAAAGATTCAGGTACATCCCCTGAGGCTATTGTGAACCCCAAAACACCTTCCATAGAAGAAGAAACGGCAAAATCAAAAGCTGACAAATCAGAGAAGGAGCAAGGCGATGCGGCTAACTCACAAGAGAAAACTCTGAAGAAACCAGATAAAGTGCTACCATGCCCCCGCTGCAAAAGTATGGACACTAAGTTTTGTTACTATAACAACTACAATGTCAACCAGCCACGTTATTTCTGCAAAGCTTGTCAAAGATACTGGACTGCAGGTGGCACCATGCGGAATGTTCCTGTGGGGGCAGGGCGGCGAAAGAACAAGAACTCTGCCTCGCACTATCGGCACATCAGTATCTCTGAGGCCCTTCAAGCAGCCAGAATTGATTCTCCCAATGGAACTCATCTTCCACCTTTGAAAGGCAATGGTAGAGTTCTCAGCTTTGGATTAGATGCACATGCACCGATTTGTGATTCCATGGCATCTGTCCTCAATCTTGGAGAGAAAAAGGTTCCCGATAGCACAACAAATGGGTTTCAGCATGGCTTTGAGGACCAAAGACTCCCTATTCCTCGCAAAAGCGGGGAAAATGGTGATGACTCTTCGAATACATCTTCCATTACAGTTTCCAATTCCATGGGAGAAAGTAGCAAAAGCACCTTCCAACCACAACCAGTGCTCCAACATCATGGTTTCCTTCCTCAACTTCCGTGTGTTCCTTGGCCCTATACATGGAATTCTCCCGTTCCCCCACCTGCTTTGTGTCCTTCCGGATATGCCTTATCATTCTATCCTCCTGCTACATTCTGGAACTGTGGAATGCCAGGGAATTGGAATGTTCCATGGTTTTCTTCACTTTCATCTGCTTCAAACCCGAACTCTCCGGGCTCCGCTCCAAACTCTCCGACTCTGGGGAAGCACTCGCGGGACGGAGACATGATCAAGCAAGACTCTTTGCACAAAGAAGAAGCTTCAAGGCCAAGAAACGGGGGTGTTTTGGTTCCAAAAACGTTGAGAATCGATGATCCAAATGAAGCTGCAAAGAGTTCTATATGGGCAACTCTAGGAATTAAGAATGAGTCAGTAAGTGGGGCAGGTATGTTTAAGGCCTTCCAATCAAAGAAGGAGGAAAAGAATCATGTTGAAGCCTCTCCAGTGTTGATGGCCAACCCTGCAGCTTTATCTAGATCCCTCAATTTTCATGAGAACTCATGA


Promoter Sequence:
>Vu_06761::LG1:98582941-98584941(+)
TAATAATTCCTTTTATGTTGCTATAATAAGGGAGGATAAGAGAAGTATGGAGTTCAACTTTTTCTAATAATATTTTTTGAAAAATATAAAATTAATTTGAAGAATTCAAAATAAAAAAAAATTGTAAATTCAACTTTCTAATGATAAAAAACCAACAACTCCATAAAAACAGCCACAAAATAACAATAATAATATTGTGTGAGGTTAGGATAAAAACACAGAGTCAATTATTAGATACCTACTTTTATATAGGCTCATCAATTATCCGATCAAGACAATTGGTTAAGGGTTATGTCATTTGGTTTGGTTTCGTCTAATCTATATCAATAAACTATTCATCTAACATAATTAATTTAATTACTTTAAAAATATAAAAAAATATAATTTATGATTGAATAACAAAATTCACGAACAAAAAATAATAATAATAAAATTTTAAAAGAATTCTATGGTCTTAATATTTTTTAAGTTATTCAAAAAAAATTCAAGGGCATATTTATACATAGCATAATATTAAATTGAGACATTTTTCTATAAGACATAATATCTTACGCTTTTAGATCTTCAATCTATAAAAAAATTATGTGGTATAATACATTATTTTTTATCTAAAAAATATCATATCTAAATGCGTGTGTGGTTGAATATTTTTCAAAACATATTTTTAAATAATTTCGAATGTTAAACAAAGGTTGATTTGTAAAAATGGATTAAAATATAGAGAATGTAACTAAGGAAAACAATAAAGGAAGGTGGTTTTGTGGGGGGTACAGGGATGAAAAAAAATATGCGCAAATATCAGCAAATAAAATTTACGACAGATAGTTAATACTTGCGGATACTTGCGGAGTTGTGGATAACGTATATTTTAATATCCTCTTATAAACGGATAGTGTGTGGATATTATACTATAAGTACTCGCGGATATTCACTATGTGCAAAAAATAAATAAAAAAATTAATTTATATTTTATTAAGTTAAATTTAATTAAAATTAACATTAACTTATATTTATAAGATTAAATTTTAATTTTATTTTATATTTAATTTAATTTAATTTATATTATATATATTTTTGTAATTTTATTTAAATTTTATTTTAATAATTTATAAAATATTTTTTTTAAAAATATTTGTAGGTATCCGCAGATATCTACAGGTATTCGCGGGTTTTAAAATACCTGCGAGTATTTTTTAAGCGGATATCCGTGCGAGTAACGGGTTGGGTAATAGGTGGATTTTTTTTGTTCGATCAAGTTGCGAGTAGGCATTATCCGTGCTCGACCCGACCCGTTGCCATCAGGGGTTGAGTTAGACTTAAAAGTTTATTTTTTATCATTATATCAGAACAATTGATAAAGTCTATTGTAGTAATATTTTTGTGGGTTGAATTGAGTTTAAAGTAAAAAAAATAAAATAATATTTTAAAAACTTTATATGGTCTTAATATTTTTTAAGTTATTCCAAAAAATTTCAAGGGCATATTTATACATAGCAGAATATTAAATTGAGACCTTTTTCTATAAGACATAATATCTTACGCTTTTAGATCTTGAATCTATAAAAAATTAGATCTGGTATAATACATTATTCTTTTATCTAAAAAAATATCATATCTAAATGCGTGTGTGGTTCAATATTTTTCAAAACATATTTTTAAATAATTTGGACTGTTAAAAAAAAGGTTGATTTGTAAAAATGGATTAAAATATAATACTGAATGGAGAATGTAACTAAGGAAAACAATAAAGGAAAGTGGTCCGTCCATTTAGCAAGGCTGCTTCCAATGACATTAAGCCACGTGAAGGAGATTTTTTAGGCAAAAGTGCTGACATAGGAAAAGAGAGGGTGCACGCAAGGAGTGTGCTACCAGAATCGAACATGGCCAAAAGAAAATCTAATAGAAGCCACAAGAATTCGTGGCCAAGAATTGAAACCTAGTTCTGACGTGGCATCTCATTCTGCTTTAATCGGATCAAAATCCTATTCGTCGTGTTTCCA


Gene Sequence:
>Vu_06761(+)
ACTGACACTTCGCAACACAATCACATCCCAAACCAAGTAACTAACTCGCTGCCATCTCTCACTTTTCGATTCGATCCCCAAAAAAAATGCACGAAATTAGAGATCCTGCAATTAGGCTCTTCGGCCAGAAGATCCCCTTCCCTGAAGATGTTGACATAGAAGAAGAAGAAGAGGAAGAAGACGAGAGTGGTGATGGAAAAGAGGAAGAGAAAGAAGAGGATAAGGTATGGTTTGTAGTGTGTCTCAGAAAATTGTTTTCAGAATCAAACCAACGTTTTTTGTGACGTACACACAACACCCTTTCCTTCTAATGCCAAAACCTCTCATGGGTCCGTTTTGTCTCTTCGTTTTTCCTTTATTTGCACACATCACAACAACCTACCTCCCTACTCGTCTGCTTTTTTTTAAAAAAAATTCGTTTCTACCTCAATTTTTACTCCTCATGTTGTTCTTCAATGGAAAACTTGTACCCTTCTGTTAATTTTTGTCAATTCCAATTGGAAATTGATTTAACGAAAGTTCCCAATTTGCGTAATTTTTTGCTAATTAGGTAGTTTCAATTCAATGTTCTCGAAGTAAATTGGTCGGATGTTAAAAGAAAAATCTGTTTTTTTTTCAATTCCAAAATTGGCTTATTTTTGTACAAAATAATAGGTTTAGTAACCTTGCTAAGAATTGAAGTAAAAATTGTATTCCAAACCGTTCGTAGACAGCAAACTTTCTCGTGTTCTGATTTTGCTGATTGTGATAAATTTTATGGAACATTTTGACGTTTGAGTGGTGATCTCAACAATCTACCCAACAATTTCAGTCAACTCTGTCTGCAGAACAGGAACATCACTGTTTTTTTTTTCTCATCCACTTGTTTTATTGTTTCAACTCTATGTACATGTTTACTTCATTGTCCTGCTTAAAACCAGTGTTTTCTGTCGGTACAATCCTACTCTCATCCAAATCTGTGCTAATAATCCGCTATGTGACTGTAAGGGGTTTCCTTTCTCTACCTTTCTTTGCCACTAAAAATTGATATTTTTTTTTCGCTTGGATCATTCAGCTAACACTTCACAGCTAAATTATCTATATAGTTCCTTGAGTTCCTGCATCAAGTATTTTTTTTAGACCGTGGAATTGTTGTATTGTGTATTCTGGAATGTTAAGAACAGGGAACTCTATACTGTATGTAAGAATGGTTCCAGTATAATTTTTCATTGGTCTTGCTTATATTTTTACACTGTCAAATTGCATAGATACTTCTATAAGATCGGCTTTTTGAGTTTTCTCCACTGAAAAATTGAACATATTTTCTGAGTATGGTCAGAGGTTTTCAAATTTTGGTTTTCTTTTATGCAATATTTCTTCAAAAAGACTGCTCTACCTTCCTTATTACCCAATACTATTGTTTTTCCTGTTATGACAATTGTGAACATGTATATCTTGGTTTTGTTTATGCAATTCAGAAGCATTCATTTTAGTGAGCAAAACATGTTTTATATTACTAGGATGCTGGAGTTGAAAATGTTACTGAGGAAGACCTAGAAGCTGATCCTTCTCCGAGTGCAGGAGAGACTAAAGATTCAGGTACATCCCCTGAGGCTATTGTGAACCCCAAAACACCTTCCATAGAAGAAGAAACGGCAAAATCAAAAGCTGACAAATCAGAGAAGGAGCAAGGCGATGCGGCTAACTCACAAGAGAAAACTCTGAAGAAACCAGATAAAGTGCTACCATGCCCCCGCTGCAAAAGTATGGACACTAAGTTTTGTTACTATAACAACTACAATGTCAACCAGCCACGTTATTTCTGCAAAGCTTGTCAAAGATACTGGACTGCAGGTGGCACCATGCGGAATGTTCCTGTGGGGGCAGGGCGGCGAAAGAACAAGAACTCTGCCTCGCACTATCGGCACATCAGTATCTCTGAGGCCCTTCAAGCAGCCAGAATTGATTCTCCCAATGGAACTCATCTTCCACCTTTGAAAGGCAATGGTAGAGTTCTCAGCTTTGGATTAGATGCACATGCACCGATTTGTGATTCCATGGCATCTGTCCTCAATCTTGGAGAGAAAAAGGTTCCCGATAGCACAACAAATGGGTTTCAGCATGGCTTTGAGGACCAAAGACTCCCTATTCCTCGCAAAAGCGGGGAAAATGGTGATGACTCTTCGAATACATCTTCCATTACAGTTTCCAATTCCATGGGAGAAAGTAGCAAAAGCACCTTCCAACCACAACCAGTGCTCCAACATCATGGTTTCCTTCCTCAACTTCCGTGTGTTCCTTGGCCCTATACATGGAATTCTCCCGTTCCCCCACCTGCTTTGTGTCCTTCCGGATATGCCTTATCATTCTATCCTCCTGCTACATTCTGGAACTGTGGAATGCCAGGGAATTGGAATGTTCCATGGTTTTCTTCACTTTCATCTGCTTCAAACCCGAACTCTCCGGGCTCCGCTCCAAACTCTCCGACTCTGGGGAAGCACTCGCGGGACGGAGACATGATCAAGCAAGACTCTTTGCACAAAGAAGAAGCTTCAAGGCCAAGAAACGGGGGTGTTTTGGTTCCAAAAACGTTGAGAATCGATGATCCAAATGAAGCTGCAAAGAGTTCTATATGGGCAACTCTAGGAATTAAGAATGAGTCAGTAAGTGGGGCAGGTATGTTTAAGGCCTTCCAATCAAAGAAGGAGGAAAAGAATCATGTTGAAGCCTCTCCAGTGTTGATGGCCAACCCTGCAGCTTTATCTAGATCCCTCAATTTTCATGAGAACTCATGAAATAATGGCACCTGTTAGAAGTCCTTTTTGCAAGGTTAGTCACTTATAGTGTATCCAGCAAGAGACGGTGACCATCTTTGAGTGAAGGATTATTGATTTGCTTCGTTGACCGTGTATAGAAGAACCGAAAGGGTGGTACTCTCTGATTTCCTCAGCAAGCATAAGTGGACGGGAGGACTAATTTTGTCTTTATTTTATTTGACATTATGAATAGAATATATAGGTTATTTTTAATGTGGTTAGTTTGAAAAGTTTGAGTTCATGTGCATGTATAAAAGTATATATGTGAAATACTGATCTTTTAGGCCAGAGATGGAAAAGATCTTTCACGTTGTATAAAAATCCAGATATTGTACATGTTTTCGGTACTCAGTAGAAAAGTTCTGACTTTCGGAGT