Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_06716 LG1 98177137 98180894 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   cell division, sexual reproduction, shoot system morphogenesis, protein phosphorylation, meiotic cell cycle process, meiotic cell cycle process, cellular developmental process, shoot system morphogenesis, negative regulation of cellular process, phloem or xylem histogenesis, stomatal complex development, shoot system development, protein phosphorylation, shoot system development, regulation of cellular component organization, regulation of cellular component organization, stomatal complex development, meiotic cell cycle process, macromolecule modification, stem cell population maintenance, tissue development, positive regulation of cellular process, protein phosphorylation
Cellular Component   located in   chloroplast, nucleus
Molecular Function   enables   protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein kinase activity, protein kinase activity, protein binding, protein kinase activity
SNP Position Effect Amino acid change
C/T 98177165 missense_variant p.Ala10Val
G/C 98177166 synonymous_variant p.Ala10Ala
A/T 98177176 missense_variant p.Thr14Ser
T/C 98177248 upstream_gene_variant
T/C 98177571 missense_variant p.Tyr59His
T/C 98177592 stop_lost p.Ter66Argext*?
G/A 98177769 missense_variant&splice_region_variant p.Gly95Asp
T/A 98177843 upstream_gene_variant
T/G 98177851 upstream_gene_variant
A/C 98177979 upstream_gene_variant
A/C 98178062 missense_variant p.Lys128Thr
G/T 98178066 missense_variant p.Glu129Asp
A/C 98178069 synonymous_variant p.Ala130Ala
G/T 98178074 missense_variant p.Arg132Leu
T/A 98178125 upstream_gene_variant
T/C 98178317 upstream_gene_variant
A/G 98178709 upstream_gene_variant
T/C 98178731 upstream_gene_variant
T/C 98179010 upstream_gene_variant
T/A 98179018 upstream_gene_variant
G/A 98179020 upstream_gene_variant
A/G 98179371 upstream_gene_variant
G/A 98179447 missense_variant p.Val292Ile
A/T 98180057 upstream_gene_variant
C/T 98180081 upstream_gene_variant
T/C 98180290 upstream_gene_variant
T/C 98180409 upstream_gene_variant
T/C 98180484 missense_variant p.Cys404Arg
G/C 98180485 missense_variant p.Cys404Ser
C/T 98180711 synonymous_variant p.Asp447Asp
T/C 98180735 synonymous_variant p.Ile455Ile
G/T 98180745 stop_gained p.Gly459*

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_06716.1
MGIVTCISLAIMVTVFCPSSLALTLDGLTLLEIKSALNDTKNVLSNWQEFDETHCRWTGISCHPGDDQRVRIINLPYMQLGGILSPSIGKLSGLQRLALHQNSLHGTIPNELTNCSDLRALYLRGNFFEGGIPSNIGNLSYLNILDLSSNLLKGAIPSSIGRLSQLQILNLTTNFFSGEIPDIGVLSTFSKYSFEGNSDLCGRQIEKPCRTSLGFPVVLPHAEIPAKRSSRYMKVLLIYAIAIMGIALVMVLSFLWTRLISKKERAAKRYTEVKKQVHPGASAKLITFHGDLPYTSSEIVEKLESLDEENILGSGGYGTVYRMEMNDRRLFAVKRIDRSYEGSDQVFERELEILGSIKHTNLVNMRGYCRLPSSRFLIYDYLVLGSLDDVLHEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFVRRGLNVVGWVNTLLRDNKMKDVVDKRCRIADEGTLEVILELALRCTDGNADDRPSMNEVLQLLKQEVMSCPSEFYESDSDY*


CDS Sequence:
>Vu_06716.1
ATGGGGATTGTAACATGCATTTCTCTGGCGATTATGGTCACAGTTTTCTGCCCTTCTTCTCTTGCTCTCACCCTGGATGGTCTGACCTTGTTGGAAATAAAAAGTGCTTTGAATGATACTAAGAATGTTCTGAGCAACTGGCAAGAGTTTGATGAGACTCATTGTAGATGGACTGGTATCTCTTGCCACCCTGGCGATGACCAAAGAGTTCGCATAATAAATCTGCCATACATGCAACTTGGAGGAATTTTATCTCCCAGCATTGGTAAACTCAGTGGACTACAAAGGCTGGCCCTTCATCAGAACAGCTTGCATGGAACCATTCCTAATGAACTTACCAATTGTTCTGATCTAAGAGCACTGTACTTGAGGGGTAACTTTTTTGAAGGAGGCATACCGTCAAACATTGGAAATCTTTCATATTTGAATATATTGGATTTATCGAGTAACTTATTGAAAGGTGCCATACCTTCCTCTATTGGCCGTCTCTCACAATTGCAAATTCTGAACTTGACTACCAATTTCTTTTCTGGTGAAATTCCTGACATTGGAGTACTGAGCACCTTTAGCAAATACTCGTTTGAGGGAAATTCAGATCTTTGTGGGCGGCAAATCGAAAAGCCATGTCGGACATCACTTGGTTTTCCTGTGGTGCTCCCCCATGCTGAAATCCCTGCCAAAAGGTCTTCACGTTACATGAAGGTACTGTTAATTTATGCAATTGCAATTATGGGTATCGCACTTGTCATGGTGCTTTCATTTCTGTGGACTCGTTTGATATCAAAGAAAGAGCGAGCTGCAAAGAGATACACGGAAGTCAAGAAACAAGTTCATCCAGGAGCTAGCGCAAAACTTATTACATTCCATGGTGATCTGCCGTACACATCGTCTGAGATCGTAGAGAAGCTGGAGTCTCTAGATGAAGAGAATATATTAGGATCCGGAGGATATGGTACTGTTTACCGAATGGAGATGAATGATCGTCGTCTATTTGCTGTTAAACGGATTGATCGAAGTTATGAAGGGTCCGATCAAGTGTTTGAAAGGGAACTCGAGATCTTGGGGAGCATCAAACACACAAATCTTGTAAATATGCGTGGTTACTGCAGGCTTCCTTCTTCAAGATTCCTTATCTATGACTATTTGGTCTTAGGCAGCTTAGATGATGTCTTGCATGAGTATCTACAAAGTGGAAGAGCAACTGAGAAGTCGGATGTGTATAGCTTTGGAGTTCTTTTACTCGAACTTGTAACTGGGAAGAGGCCAACAGATCCATCTTTTGTGAGAAGAGGTTTAAATGTTGTTGGTTGGGTGAACACATTACTGAGAGATAACAAAATGAAAGACGTGGTGGACAAAAGATGCAGAATTGCAGATGAAGGAACCCTTGAAGTTATTCTTGAGCTAGCATTAAGATGCACAGATGGAAATGCAGATGATCGTCCATCAATGAACGAGGTGTTACAGTTGCTGAAGCAAGAGGTTATGTCCTGTCCAAGCGAGTTTTATGAGTCTGATTCAGATTACTGA


Promoter Sequence:
>Vu_06716::LG1:98175137-98177137(+)
CCTCATCCATTTCAGACAACTTCAATCTAAAGTTTGACATGTTTAATCTTTATACATAATAAGTTAGAATACTAAAACCTCCAACTCATCATCTTATGTCACAATTTTCCCATCTTCTCTACCTTGTTTTTTTTTTAAAAAAAATTATATATATATATATATATATATATAAATTTATTTTTTATTAGAATACATAAAATTTCTAATTGTTTTAATTTTCCTTTTTACTTACTTTAATTTTTTGCCCTCTTTTACCATTAGAAACATTTATTATTGATGATATATATTTTTTTATTTTATAAAAAAAATTATATTTCGACTTCAATTAGAGTTTATTATTCAATATATAATCCCATTATCAACATTTTATTTAAAAGTAGAAAATTTCACCAAATCTTTTTAAATTATTTGTTAGCCACAATCGTATTGTAATATATTATTTTGAAAAGAATTAATTATAATTAACCTTAATTAGTATTTCTTATAAAAAAATGTATGTAATGCTTAAAATGTTCAGTCTTGTAAAATTTTATTAGAAGAAAATGTTACAAATTTATAAAATTTGAATTGTACTGAGAAAAAAAATATATTATAAAATAAAAGCACTGTAACAAAATTTAGTTTGAACTTCACATCTAAATAAACAAACATGTCGGGAAAACTTATTTTAAGATCTTTAGAAAAAAATTTAAATCAAATTTTCTTATTCTTAAGCTAATGAATAAACAACTAATGAAAATTTAAATAAATTATACTTACACCTTTTCAGATTATCTAATGCATAAACTAGTTCTAATATATAAAAAAATAGTATCAATTGTTTTATCTTAAGATACTCATGAAGAAAGTTGTTTAAATTAGTGAATAGATGGATAAAGGGAGGATTATATACATCTCAACTTCAAACTTCAATACTAACATATATAATGAGAATTTACATATTGCTTATCAACAAAGAAGTATGCTGTTTGGTTGAATTTATTTTATGGAATTTATAAAATAATATATTATTTTTAACAGATAATATTTTCTAAATATACACAAACTATATCAACTAACTAAGATAAACAACTTGTATGAATACATGTCTTTAAAAGCTAAGACAATATAATGAACATTCTTTTGTAGCAATACAATTAAGATGTATTAGAAATTACGTTCGCATATTTTGTCCTTTATTTGTGTAAAAAACTGGATAATTATTTTTCATTTTTATTATTAAAAAATGATAAAAGTTAGATAGAAATATCTATTGTAAGAAAGACATGAACTGAAAAGGAAAAGTATAAGATAGGTTATAAATAGAGAAATCAAATTGTTATTGTATATACTCACTTCAAATTTATCTTGAAACTGGAAAAAACAAGAACATAGGATCCATCAATAATTTCATCCTAATTGTGCAATTCTTCCTTTTTATTATTATTGTTAAAATTTAAATATTAAATTAGATTAAATATATCTGACATTTCTCTGGGACTGTGAAAAAATTACCACGCGCTACCTGCTGCTGTGGCTTTTCACTTCTCATCTCTATTAGTTCTTGTCGATGGCAAATTTTGTTTTTGTTAACATAATGGCGAGTATCCTTTACACTCACATACTCGAGTGGTTCAAGAATTTGTTTTTGAATTTCGCTCTGAACAACTGCTGCACCGCTTTTCATACCGATTTTCAAAATACTTGTCCTTTTTCCCTCTCTTTATAAAAATATTTAATAAATTAAGTCTTAGAACCAATAAAAAAAAGTAAATATCAGAGTAGTATGAGACCACTCTCTTACCTTTGCATGAAATTATTCTCACTGTTTTCTCTATATATTAGTTATTTTGAGTTCATGAAAGTTAAATCATATGGTAACATCTGGGTCTACATTATTATCATACTCCCAACCCTACTCACACTTTTTTCCTACTGATCATCACTTTAAAGTCATACTCTTCTGGTGACTAGTTTCAGTTTCTCACATAGAAAGTTCAAATTTTTTGAGAGATTGGAAA


Gene Sequence:
>Vu_06716(+)
ATGGGGATTGTAACATGCATTTCTCTGGCGATTATGGTCACAGTTTTCTGCCCTTCTTCTCTTGCTCTCACCCTGGATGGTTAGAGCCATGAATCTTTTTTATTTCTCTGCTTCAAATCCTCTTCCATGTTTTGTTTAGTTTTTCCTATGATTTTTTTTTTCTTTTGTGGAGAAGAATAAATGCATTCTGGGTACTTTTTCCATTTCACCTTAGCTATTTTGGGAGTTTATCTTTATCATTCTCTCTCCAAATCTTTGTAAAACGCTTCTCCTTGTGAAAACTGGAGTTTAAAGTTGTGAACTTTAATTCTCTTATGCATGTTTTTTCATCTGTTAGGTCTGACCTTGTTGGAAATAAAAAGTGCTTTGAATGATACTAAGAATGTTCTGAGCAACTGGCAAGAGTTTGATGAGACTCATTGTAGATGGACTGGTATCTCTTGCCACCCTGGCGATGACCAAAGAGTTCGCATAATGTAAGCAAACAACACATGCACTTCATTCTGTTTCCTTTTTCTCCCACTTTCTCAGCTCAGTATAACACTTTATGTTTTGTTCTTCAGAAATCTGCCATACATGCAACTTGGAGGAATTTTATCTCCCAGCATTGGTAAACTCAGTGGACTACAAAGGCTGTAAGTAGAAAACACATTTCCCTCACCATTGGTGAACTTGCACATGAGACTTTTATCATTCTCATTCCATATGATGGCTTGCAATGAATCAGGGCCCTTCATCAGAACAGCTTGCATGGAACCATTCCTAATGAACTTACCAATTGTTCTGATCTAAGAGCACTGTAAGTTAAATGGTTCAATCCTAAAGAAGTATTTATCAATTTCATATAAATTGCTTTTATGCTATGTCGATGGTGATGTGTCTCATCTGATTGTATTCAAAGGTACTTGAGGGGTAACTTTTTTGAAGGAGGCATACCGTCAAACATTGGAAATCTTTCATATTTGAATATATTGTAATTCCTTGTTCCTTGCTTTTCTCACTGTTCCTTTATGATTCTTTGAGCTTGTTTCTACACTTTGTTTCTCAACTGCATTTTAATTTATCTGGAATTTAATACATAGTTTAAATACAGGGATTTATCGAGTAACTTATTGAAAGGTGCCATACCTTCCTCTATTGGCCGTCTCTCACAATTGCAAATTCTGTAAGTCAGTATAACTTAAACTTCTCTGGCATAATGATGTTAATAACTCTATGATTCATTTATGCTCACTCTCCCTGTCTTAGGAACTTGACTACCAATTTCTTTTCTGGTGAAATTCCTGACATTGGAGTACTGAGCACCTTTAGCAAATACTCGTATGTACTCCTTCCTTATTGCAGTTTATATTATACCTTGTAACATGCAGACTAATTATTTGCACTCATGCATTACAGTAGGGTGATAAGTTTACTTGGTAACTGTTGTGTTTTAAATTATTGGAGTCAAACATAGTGTTTTATTATTTGTAAACTATTTGAATTTGAATGGTGAAAATTGTGGATCAAAGACTGAAGTCAACATTTCACTTTTGATTTCTGAACTTCTGCCTTCTATCTTTTTAATATTTAAGGTAAAAAAAATCATTTTGTGTTTTTAAGTTTTCTTGGCTGTTGGATTTTGGATTTTCATTGACACTAAGAATTTTGGATTTTCTTGTGTTTTCTATATCTGTTATCATGTTAATGTATTTGCACTATGAGCAGCACGTTGGTTTCTATTATTTCTTTACTTTTGTAATGACAAATTCATGTAAATAGGTTTGAGGGAAATTCAGATCTTTGTGGGCGGCAAATCGAAAAGCCATGTCGGACATCACTTGGTTTTCCTGTGGTGCTCCCCCATGCTGAAAGTGATCAAGCTGCAGGCAAGTCTTACCTTTGAATTTGATTTTCCTAAATACTATCTAATTTCCTTGATTTAGAACTAAATACATATTAAAGAATTATGGTCACTGTTTTGTATGATAATCCTTATCACTTCAATATATGCAGTCCCTGCCAAAAGGTCTTCACGTTACATGAAGGTACTGTTAATTTATGCAATTGCAATTATGGGTATCGCACTTGTCATGGTGCTTTCATTTCTGTGGACTCGTTTGATATCAAAGAAAGAGCGAGCTGCAAAGAGATACACGGAAGTCAAGAAACAAGTTCATCCAGGAGCTAGTAAGAAGAGTGATATTTTCAAATTTGACAATCTCCTATTAACTACCAAGGAAAAAAGAAAAGAAAATATTCTCTTTATTCATAGATGCTAACATAATCTTTAACAGGCGCAAAACTTATTACATTCCATGGTGATCTGCCGTACACATCGTCTGAGATCGTAGAGAAGCTGGAGTCTCTAGATGAAGAGAATATATTAGGATCCGGAGGATATGGTACTGTTTACCGAATGGAGATGAATGATCGTCGTCTATTTGCTGTTAAACGGATTGATCGAAGTTATGAAGGGTCCGATCAAGTGTTTGAAAGGGAACTCGAGATCTTGGGGAGCATCAAACACACAAATCTTGTAAATATGCGTGGTTACTGCAGGCTTCCTTCTTCAAGATTCCTTATCTATGACTATTTGGTCTTAGGCAGCTTAGATGATGTCTTGCATGGTACGATTCAAGCCAGTAAATTTTATAAAATGTATTGTAAATTTGTGATGACTCAGTCCTGTAGCTGTGCAATTTTCTAATTGTTATGCAATCCTTTGTTCAGAAAATACTCAAGAAATCCTAGTACCGAACTGGAGTGATCGCCTAAAGATAGCTCTTGGTGCTGCCCGGGGTTTGGCTTACTTGCACCACGAATGCAGCCCAGAAATTGTTCACCGTAATATAAAATCTAGCAACATACTCTTTGATGAATGCATGGAGTCACATATATCCGATTTGGGCCTTGCAAAGCTTTTGGTCGATGAGGAGGCACATGTTACCACAGTGGTAGCTGGCACATTTGGTTATTTGGCACCAGGTATGTATTTACTACTTTTGGATACTTATAGGTGGCCTGGTTATCCTTTATTTTGTTTTGGGCTTTTGGATTCAAGATGATCATATTCCATTCACTAATCAAATTTTCAATTGACCTATACCAAATGTGCTAAAAGAGTGCTGAATGATATGGTAGATAATTATTTCTAATGTATACAATATGTATTAATTGGCCAAATGCTGATAAATGCTAAGAATACTATTCAAAGCATTACTCAAGTTGTCCCTGTAACAAGACCCTATTAATTATTCAAAAATGTATCAAGTGATTTTCTGAATTTAATATTGATTGAGTGGTGGTTTATAATTTACCTGTCAACCAGAGTATCTACAAAGTGGAAGAGCAACTGAGAAGTCGGATGTGTATAGCTTTGGAGTTCTTTTACTCGAACTTGTAACTGGGAAGAGGCCAACAGATCCATCTTTTGTGAGAAGAGGTTTAAATGTTGTTGGTTGGGTAAGCTAAGCTTTTTAACCCTCAATGCAAATCTCTGGTAACGCAGGAAAGTTTTTCCAACATAAATGTACTGAGCTTTAGGCAATTCTTTGCAGGTGAACACATTACTGAGAGATAACAAAATGAAAGACGTGGTGGACAAAAGATGCAGAATTGCAGATGAAGGAACCCTTGAAGTTATTCTTGAGCTAGCATTAAGATGCACAGATGGAAATGCAGATGATCGTCCATCAATGAACGAGGTGTTACAGTTGCTGAAGCAAGAGGTTATGTCCTGTCCAAGCGAGTTTTATGAGTCTGATTCAGATTACTGA