Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_06708 LG1 98073890 98075326 PREDICTED: LOB domain-containing protein 27-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   microsporogenesis, microsporogenesis, pollen development, microsporogenesis, regulation of asymmetric cell division, microsporogenesis
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   protein binding
SNP Position Effect Amino acid change
A/G 98074063 downstream_gene_variant
A/G 98074091 downstream_gene_variant
T/A 98074143 downstream_gene_variant
A/T 98074250 downstream_gene_variant
T/A 98074881 missense_variant p.Asn149Ile
C/T 98075216 synonymous_variant p.Lys37Lys
G/T 98075241 missense_variant p.Pro29His

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_06708.1
MTLKGGTTQACAACKHQRRKCTSECLLAPYFPADQPKVFLNVHRLFGVSNIVKILKILEPNQKKIAMDSIIIQANYRDKYPVHGCWEEICRLQYQTWLAEEELHAVYQQLQICRQQQQQQQQQQHRPPPLPDDVTSQLELGMTPCTNNNALPLFNHHTPQPNTYNNNVTAFSVSQQHSYSNSNSMDYSSLYLDSKDNAMNPLWVQYPCSNNDNSVGMQTPMLSSQPLPIQQNVVEDYVDMPPIFDSLDDRQSYIYSKEAYESSSEESLKDIRKCTEDVSENELKSAAACFSLTSVN*


CDS Sequence:
>Vu_06708.1
ATGACCCTTAAGGGTGGCACGACCCAAGCCTGTGCGGCATGCAAACATCAGAGGAGAAAGTGCACTTCTGAATGCCTTCTTGCACCCTACTTCCCCGCAGACCAACCCAAGGTTTTTCTCAATGTCCACAGGCTTTTTGGAGTCAGCAACATCGTTAAGATATTGAAGATTTTGGAGCCTAACCAGAAGAAAATAGCCATGGACTCTATCATTATTCAAGCAAATTATAGGGATAAGTACCCTGTGCATGGCTGTTGGGAAGAGATTTGTAGGTTACAATACCAAACATGGCTTGCAGAAGAAGAGCTTCATGCAGTTTATCAACAGCTTCAAATATGTAGGCAGCAACAGCAACAGCAACAACAGCAACAGCATCGTCCTCCTCCCTTGCCGGATGATGTTACTTCACAATTAGAATTGGGCATGACACCATGTACTAACAATAATGCACTCCCATTGTTTAATCATCATACTCCACAACCAAACACTTACAACAATAATGTCACTGCATTCTCTGTGTCACAGCAACATTCCTATTCCAACAGTAACAGTATGGACTATAGCTCCCTCTACTTAGATTCCAAGGATAATGCCATGAATCCTTTGTGGGTTCAGTACCCCTGTTCAAATAATGACAATTCTGTAGGAATGCAAACTCCAATGCTTTCTTCACAGCCATTGCCCATTCAACAAAATGTTGTTGAGGATTATGTTGACATGCCTCCCATTTTTGATTCACTTGATGATAGACAATCGTACATTTATTCCAAGGAAGCTTACGAGTCAAGTTCAGAGGAATCACTGAAAGACATAAGAAAGTGCACAGAGGATGTTTCTGAGAATGAATTGAAGAGTGCTGCTGCCTGCTTTAGCCTTACCAGTGTCAACTAA


Promoter Sequence:
>Vu_06708::LG1:98075326-98077326(-)
GAGTTTTAAATTTACTTGATAACAGAACGATTAAAATTTTAAAATTAAAAATATCAATCCTATCAACATTTATTTTTAATAAAAACTATATTATTCTTTAGTTTTGAATTGGAATGAGAATACATAACAAAACAAAGTCAGTCTTTTTTTTATGATTTTTTTAAATAAACTATGATGACGAGTTCATATATTTTTATAATTTTTTTATTCCGTTACTATTTCAGTTACAAGGTTGAATTTGTTTGATAATTATTTCTTTTATCATATTGAATTTCATATTTATTTAACAATTAACAATATTAAAATTTCAAAATTGAAAATATCAATCATATTAAAATTTCTTTTTAATAAAAAATAAGTTAATCTATTTTTCATTTAGAACGAGAATACTTAAAAACAAAGTCAGTTTTTGAAACCGATTTGGTTTCACGAATTATCTTATTTTAAAATTTTCGATAATTTTTCTTAATAAACTATAGTAACGATTTCATATATTTTTATAGATTTTCTTTTTTCAGTTTCTATTTCAGTCCGGACAATGTCTATTAGAAAAAGATAAAATAAATTAAAAAAATACAATAAGATAAAATAAAATAGATATTTTTTATATGTAAAGAATTTTATTAAGATTCGCTCCAAGATAATAAAAGTACTTATTACCAAAAGTCACAAAAAGCTACCCCTTTTATTAACGTGAATTATGAACATGTTTCAAATTGAAGAAGTCCCCATATCATCTCTTCACTACACAAAATTCTCTTCACTACTACTTAACTTTAATTTACAATTATATTAATTTAATGAAAACATTGCACAACGTTTTACCTAAAGTGTTATAATCTTAAAAAGGTTTTAAAATATCATGTGTTTTCATTATAACTAAGTGATAATTGATATTTTTCATATTATCATAAGGTTAATAATGATTATAGGAATTTCTTAAGATCTTTTAATGATTATAAAATAATGATTAGGAATTTCTTAGGTATTACAACATATTAGATGATATATGAAATTAATGAACAAATATACTAATTTAATTAATACATTACACAGATTTATGAAAGTTTAAAAATAGATCTGTATTTGTCATTTGTTTTAATAGAAAGCCTCTTTCAATGTAAAAGTCGTTTCAACAAACACAAAGAAAAGCAAATATGAAGTTCAACAAATCGATCCTAACAAACAAAAGAAAAACAAAGGCAGAACAAATCAACTTAACTTATGAATCTGTTCACGACTAACAATAGAAACACTAAGAGCATCTTAAAATAAATCAGAAACTAAAAATAGTGATTTATTTTAAAACATGAAAATAACAAGTAACATTTTAACGAAATAAAAACTATATTTAAATCACATTTTATACACGAGTTTATCTTTTTAAAAAAGAATCATCACAATCACACAGTCTAATTTGACAGTCAAAATCATATTTAAATCTGAAATGTGAACAGCAGGCAAAGTAAAAATGGTTGTTTTCTATTAAACGTGAGTTGCGCTATAGTTGACATGCAAACAATAGAGAATATTTAGTAAAAAGATAAGTTATTTGAAGAATAGATTGTTTGGATGATAAGAACACAGTGTGGAAAATCTATGAAAAAATATATTACTGCTTAAAATCTGAAGCAGCAGAACAAAAAAGAAAAAGAAAAAGAAAACAACCTAGACAGAATGAGCAGATGGAACTTAACCCTAAAACCTAGGAGTTATCACATTCTCCACAAACCTATCCCTAACGGCATCACTCTTGAAAACACCATGTCCCTACACCTGGCGTTTTACTGGGTCTTTCCATGCCCAACAGATCCGCATATTAATAAAGCATGCTACCATTCCACTCTTACCTCTCTATCTTTTTCTCTTCCTCTAACTGCATCCTTCATCTCTCTCACTAATGTTCTTCTCTTTCTTCATCCATTCATTGAAATCACCACCGTGGAAACGAGGGGTTGCAGCATCGTCTCCCAACATAGCAGCTGCTGGGGGATTCAACA


Gene Sequence:
>Vu_06708(-)
ATGACCCTTAAGGGTGGCACGACCCAAGCCTGTGCGGCATGCAAACATCAGAGGAGAAAGTGCACTTCTGAATGCCTTCTTGCACCCTACTTCCCCGCAGACCAACCCAAGGTTTTTCTCAATGTCCACAGGCTTTTTGGAGTCAGCAACATCGTTAAGATATTGAAGATTTTGGAGCCTAACCAGAAGAAAATAGCCATGGACTCTATCATTATTCAAGCAAATTATAGGGATAAGTACCCTGTGCATGGCTGTTGGGAAGAGATTTGTAGGTTACAATACCAAACATGGCTTGCAGAAGAAGAGCTTCATGCAGTTTATCAACAGCTTCAAATATGTAGGCAGCAACAGCAACAGCAACAACAGCAACAGCATCGTCCTCCTCCCTTGCCGGATGATGTTACTTCACAATTAGAATTGGGCATGACACCATGTACTAACAATAATGCACTCCCATTGTTTAATCATCATACTCCACAACCAAACACTTACAACAATAATGTCACTGCATTCTCTGTGTCACAGCAACATTCCTATTCCAACAGTAACAGTATGGACTATAGCTCCCTCTACTTAGATTCCAAGGATAATGCCATGAATCCTTTGTGGGTTCAGTACCCCTGTTCAAATAATGACAATTCTGTAGGAATGCAAACTCCAATGCTTTCTTCACAGCCATTGCCCATTCAACAAAATGTTGTTGAGGATTATGTTGACATGCCTCCCATTTTTGATTCACTTGATGATAGACAATCGTACATTTATTCCAAGGAAGCTTACGAGTCAAGGTAGATTCATTAATCATGTTTTTCATTTGGTTAGAAATGAGGTTGATTGAGTTTCAACTTTTACATGTTCTTAAAGCTAAAACATAGTTTCGTCGTTTAATAAGGTTTTAATTTGATTTACAGTCTACATTTTATTTTTTTACTTTCGTTGAGTGTTTATCTTAGATCAGAGTAATCCTTCGGTTTCAGGCAGTTTATATGTAGACTATAGCTTATTTGAGGGCCTCTCAAACAGTTGTCACCATATCAATGTAAGAAATTAAGGAATAAAAACCAAATAATCGGAACTGATTCAAAACAATGTATCATTTTTATAATCAGAAAGAAAAAACCGTGGATAAAAATGCAACTATACATCTCTAAAATATCGAAATGGAACAATTTTATTTTAGTTTACCTTCAATTAGTTAGCAAAACAATCAGCTGAGAGTCAATGCAGAAATTGCATAAAAGGAATGCGTAGTAGAAATTTAAGTAGTTATGATGAACTTGAAGTGAGATGAGATGTTCTTATTTGATACAGTATTTGTATATCTGTGCCTGCAGTTCAGAGGAATCACTGAAAGACATAAGAAAGTGCACAGAGGATGTTTCTGAGAATGAATTGAAGAGTGCTGCTGCCTGCTTTAGCCTTACCAGTGTCAACTAA