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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_06697 LG1 97916947 97920534 PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like
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Annotations  
category   relationship type   keyword
Pathway   B 09132 Signal transduction   C 04012 ErbB signaling pathway [PATH:ko04012]
SNP Position Effect Amino acid change
G/A 97917417 synonymous_variant p.Ser391Ser
A/T 97917664 upstream_gene_variant
C/A 97917902 upstream_gene_variant
T/G 97918062 upstream_gene_variant
T/G 97918252 upstream_gene_variant
T/A 97918397 upstream_gene_variant
A/G 97918412 upstream_gene_variant
A/T 97918437 upstream_gene_variant
A/T 97918451 upstream_gene_variant
C/A 97918497 upstream_gene_variant
G/A 97918608 upstream_gene_variant
A/T 97918615 upstream_gene_variant
T/A 97919163 upstream_gene_variant
A/C 97919166 upstream_gene_variant
A/T 97919174 upstream_gene_variant
T/G 97919573 upstream_gene_variant
T/A 97920285 missense_variant p.Glu61Val
G/T 97920390 missense_variant p.Ser26Tyr
G/T 97920493 5_prime_UTR_variant
T/A 97920496 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_06697.1
MVSTHDKKTNLARLIIPSSSSSPSPSPSITSPHVIHSRSHSFVGPSPRFNPSSTPLFFLQEDDDEDEEKEPLSSDPVKIGPSDFHILRVVGQGAFGKVFLVRKKGNCFDGDGDGVFAMKVMRKDTIIKKNHVDYMKAERDILTKVLHPFIVQLRYSFQTNSKLYLVLDFVNGGHLFFHLYRQGIFSEDQARLYTAEIVSAVSHLHSKGIVHRDLKPENILMDSHGHVMLTDFGMSKEIDELGRSNSLCGTVEYMAPEILLAKGHNKDADWWSVGILLYEMLTGKAPFTHTNRKKLQEKIIKEKVKLPPFLTSEAHSLLKGLLQKDPTTRLGHGRNGDEQIKSHKWFRSINWKKLEARELEPKFKPDVSGKDCTANFDKCWTAMPPNDSPASTPTAGDHFQGYTYVAPNPWLSSGSLQ*


CDS Sequence:
>Vu_06697.1
ATGGTGTCAACACACGACAAGAAGACGAACCTCGCCAGACTCATCATCCCTTCTTCTTCATCTTCCCCATCCCCATCCCCATCCATCACAAGCCCACATGTCATTCACAGTAGGTCCCACTCCTTTGTGGGTCCCTCCCCGCGCTTCAATCCCTCCTCAACCCCTCTCTTCTTCCTCCAAGAGGACGACGACGAAGACGAAGAAAAGGAACCTCTTTCTTCTGACCCTGTTAAGATTGGACCTTCCGATTTTCATATTCTCCGTGTCGTAGGGCAGGGTGCCTTTGGCAAGGTCTTTCTCGTCAGAAAAAAAGGAAATTGCTTCGATGGTGATGGTGATGGGGTCTTCGCCATGAAGGTCATGAGAAAGGACACCATTATAAAGAAAAACCACGTTGATTACATGAAAGCGGAGAGGGATATTCTCACTAAAGTCCTTCACCCTTTCATTGTTCAGCTACGTTACTCTTTTCAGACCAATTCTAAGTTATATTTGGTGTTGGATTTTGTAAACGGAGGGCATCTCTTCTTTCATCTGTATCGCCAGGGTATCTTCAGTGAGGATCAGGCAAGGCTTTACACTGCTGAGATAGTGTCTGCAGTTTCACATCTTCACAGCAAAGGCATCGTGCATCGGGATCTTAAGCCTGAAAACATTCTAATGGACTCTCACGGGCATGTCATGCTGACTGATTTTGGAATGTCAAAAGAGATTGATGAATTGGGAAGATCCAACTCTCTTTGTGGCACCGTGGAATATATGGCTCCTGAAATTCTTCTGGCTAAAGGCCATAACAAGGATGCGGATTGGTGGAGTGTTGGTATCCTGTTGTATGAAATGCTAACAGGGAAGGCACCGTTTACACACACTAACAGAAAGAAACTTCAGGAGAAAATTATTAAAGAGAAAGTTAAACTTCCACCATTCCTTACCAGTGAAGCTCATTCATTACTCAAAGGATTGCTGCAAAAGGATCCAACAACAAGGTTAGGACATGGGCGAAATGGAGATGAGCAGATCAAAAGTCATAAATGGTTTAGGTCAATCAATTGGAAAAAATTGGAGGCAAGAGAACTGGAACCAAAGTTTAAACCAGATGTGTCTGGGAAAGACTGTACTGCTAATTTTGACAAATGTTGGACAGCAATGCCCCCTAATGACTCACCAGCATCCACACCTACAGCAGGTGACCATTTCCAGGGCTATACTTATGTGGCGCCCAACCCTTGGCTTTCATCTGGTTCACTACAATGA


Promoter Sequence:
>Vu_06697::LG1:97920534-97922534(-)
CGGTTTTCTTGGCAAACATAATGAAAAATAGGATTCTGTCATCTGGGTAGAATCCTGGTCGAGGACGAACGTCCTCATACTAAAATGCTTTGCTCTTAGCGTTCGGCAAAGCACTGTTACTTCAAGTTACTTAACGTTCGGTCTCACTCCTGACGTTCGTACTGGGAAGCGTTCGATATCACACTGAACGTACGCTCTTATTGACGCTCGGTCTTATACTGAGCGTTCGCTATAAATGAAGCTCGGTCTTACACTGAGCGCTCGCTCTAAATTGTGTTCGGTCTATACCGAGCGTTCGTCCTAATTGCCCCGATTTGAAACGAGCGTTCGTCATAAAATGGGGTTCAGTCTTATACTGAGCGCTCGCTCTGAATGGTGTTCGGTTTAATTGAAATAGCGTACGTCCAACTTCTGATTTGCCACGTTCGGTCATTTATTTAAAATTCACGAGCGTCAGTTCATTAACTGATTCTCAAGGTAATAACGTTCGTCCAATGAACAGTATAATATGTATTCCCGTACGTCATTGAAATTCTGTCGTTCGTACTTTGATTCGAACGAGTGTCGTTTTGGGTCTCGCTGACAGCGTTCGTCCTCGGCCTTATTGGGGACAGAACGTTCGTTTTTTTTTAGTCTACAAAGAAATGATGAAAATAAATATGAAATTATAAAGGTTGAGAATATATGATATGAAAGCAAATTGTGACTTTTGAACGAGCGTTCCAGTTAGGGACGACTCATTGATGAATAGTAATTTTGGAAAGTATACGAGATGAAATGAAAATATGATTATTGAACGAGCGTTCCAGGTAGGAATGACTCAGATAAATGTTGAAATTCGTAAAGTATGACTGTGGGAAGTTAATGCTGGCTGTTCAATCCTGATATTCCGTGAGTGATCGTCCTCAAGTAGAGGCGCACGTCATGCGTGGGAATGGCAGGAGGTCGTCGTCCTTAGAGGTACTTTGGACGGACGTACTAACCTCGGGTGGCAGCTGATGAGAATGCCAGTTACCACACCACCCGGGTGCACGAACGCCTGTAACTACGCAGAATTCATACAGTCCGGACAGTCAGTCGTGTCGAGTTTTATTTTGTGCATGCGTTATAATGTCTTGATGTGTGATAAATTATGTAATGAATTGTATGACTGATGCATGAGTTAAATTAAGTAAGCTTACCCTTTCGTTTCCTTGTGTTGTCTATTGTCCTTGTACGTCCGTCTTGTCATTGCAATGATCATCCGTGTGGATGTGAGCAGAGGGAGACGAGCGTTTGGAAGAGGCGCTGAATGAAGAGAACCTGGTTGATGTCGAAGTGAAGACCGAGCAGTGAGGCGCTCGGCCAGTTATGTAGCCAGTATTAGAGTGGTCGTTCGACCATCTTGTCTTGTTATTTTATTCCGATAGACCGTTCGGTATTTGTGCTGTGTAAACCATTCGGTCAAGTTTCGTGTACGTTCGGCTTTTTCATTTGTAACTCTGAAGACGTGCGGCTTTGCACGTCTGTTTTGTTATTATTGTAAGACTGTACTCAAGGACGTTCGTCCTTGAGCGTTGTTTTGTTTTAGTTGGAAAACTGTACTGAAATATTATTAAATGTGATTTTCTGATTTTATGGTTTATGCTGTATTTTTGGGATGTCACAATTAGTCATCGTAAATAATAATATAAAAATTATCATAAATATAACAGTTCAAAAAGAAATTACTTATTATCTTACATTAATTATAATATTATTTTATAATAAACTCAAAAACTTTAATTATTTTTAATTTTTAGCATATGAAAATAAATAAATAAAATAATATATTTGAAAAATATAAACTTAATTAAACCCAAAAAATAACCATAAAAACATCTTTAATTTGGATTTATCTCTTAGAAAATAATTTATTATTGAAGCATGATCCGAGGAGCATGAACAGCGGGTGGGCCCATCCCTTGAGGTCCCTGTTCCTAGTTCGACGTTAGCTCGACTAATCGAATCAATCATTCACC


Gene Sequence:
>Vu_06697(-)
AATTCGATTCACTGAATGCAAAGTGCAATGTAATCTCAACTCTTCTCTTTCTCTCCCTCCAACGAAAAATGGTGTCAACACACGACAAGAAGACGAACCTCGCCAGACTCATCATCCCTTCTTCTTCATCTTCCCCATCCCCATCCCCATCCATCACAAGCCCACATGTCATTCACAGTAGGTCCCACTCCTTTGTGGGTCCCTCCCCGCGCTTCAATCCCTCCTCAACCCCTCTCTTCTTCCTCCAAGAGGACGACGACGAAGACGAAGAAAAGGAACCTCTTTCTTCTGACCCTGTTAAGATTGGACCTTCCGATTTTCATATTCTCCGTGTCGTAGGGCAGGGTGCCTTTGGCAAGGTCTTTCTCGTCAGAAAAAAAGGAAATTGCTTCGATGGTGATGGTGATGGGGTCTTCGCCATGAAGGTCATGAGAAAGGACACCATTATAAAGAAAAACCACGTTGATTACATGAAAGCGGAGAGGGATATTCTCACTAAAGTCCTTCACCCTTTCATTGTTCAGCTACGTTACTCTTTTCAGGTCTCTAACTCACTATCCTGCTTCACTTCAATTCATTCACACAGTCACTTATTCAGCATGTTATGTGCAGACCAATTCTAAGTTATATTTGGTGTTGGATTTTGTAAACGGAGGGCATCTCTTCTTTCATCTGTATCGCCAGGGTATCTTCAGGTTTTTTTATTTCTTCATCTTGTTGTGTGTTGCAAGATACTGTTGAAAGTTTATGGAATTTTAATCATCCTTTGTTTCGGTGCATGTGGTGAGTAGTGAGGATCAGGCAAGGCTTTACACTGCTGAGATAGTGTCTGCAGTTTCACATCTTCACAGCAAAGGCATCGTGCATCGGGATCTTAAGCCTGAAAACATTCTAATGGACTCTCACGGGCATGTAATAATAATGCTCGTTACTCACCTCCTATGCCTTGTTTTCTTTGATCAACTTTGCTTTTTCTTCTTTGACTTTTGGTAGTCTAGTGTTTTCTGTCTCACCTTGTGGGGTTGTGCTCCTTATTCTGATGTATTAAGTTTGCTAAGTTCACTGTAGAATATCTTAGATGGCTGAGCTGTATAGTTCTCCTTTGATATTTTCTCTGCTCGTGTGTAGGTCATGCTGACTGATTTTGGAATGTCAAAAGAGATTGATGAATTGGGAAGATCCAACTCTCTTTGTGGCACCGTGGAATATATGGCTCCTGAAATTCTTCTGGCTAAAGGCCATAACAAGGATGCGGATTGGTGGAGTGTTGGTATCCTGTTGTATGAAATGCTAACAGGGAAGGTAATGCCCATCTGCACCAAAAATGCTAATAACACATTTTCTAACACTTATCATTGTCTTAAAACCTAAATTTTATTTGAAATTACTTTTGTGGGTGTCAAGATTATGTTGTTTTCAGTGAATTTTAAACAATAATAAAGAGTATGTTACGGGTATTTGTCTTGTATTTATCTATGAGTAGATTGTGGGTGAAGGTACCTAAAGTTGAATACTTGGAATTATATGTGGACAATAACAATATGCACGGTTAGAAATTACAATACATGAAGTATTTGGCCTTGAATAGAGCACGTTATTAATCAAGATATGTATGTCTTGGCCTAGGCTTTGTGTACATTTTTTTTATTTTTCAAAATTGATGTCTGAATGAATCTGTTCATTTGCTGTTCAGGAACCTTTTCTATTTCATTTATTTTCCATGTAAGAACACAAGGAGAAGCATTAACTTGTTATGGTCTATGATTCGATTTGCAGGCACCGTTTACACACACTAACAGAAAGAAACTTCAGGAGAAAATTATTAAAGAGAAAGTTAAACTTCCACCATTCCTTACCAGTGAAGCTCATTCATTACTCAAAGGAGTAAGTAGACGACAGTATATATGGTTTTCTTCCATTTTGTTTCTCTACTTTATCGTTTTCATTCACAGTGCACTTACAAGTATAATATGCCAGTTACCTGAACATAACTTAGAATGTTTGTTGTAGCTTTCTGAACCCACTGCCTTTAATATTGCGCTGGTGTCCTTTTCACTTGTCAATTTTCTATTTTTGTGTGATCTTTTTTTTTTTGTGTGTGAAATCGTATGGCTGAGGGTTCTGCATTCCAAAAGCGATCCTATCTAATTTCTATTGGGATAATTCTATTTGACATTTATACTGTATAGTGAAACTAAATATATGTCAACCAAATACCATATTCGTAGGCATATTTCAATTTATATCTTTCTCAAAACCAGTCTAAGTTCATTATCGAAGAAATCATCTATTGACCTCCAAAATTCCAATTCTGATAATTTGTGAACGCTAATTTGTTTTATTTCATGAGTATGTAGATGGACCCTGGTGTCTGTGTTAATGTACTTCGATTTCACTTGTGTTATTCAAAAGGAAAATATTTTTTTTAAATGATATTAATATTCTAATACAAATGAGTGGAAAAGATGTACCACAATTTTCCTGCAACTGTTTGTAAACAGTTGATTTTTCCAGTCCTTTTTGAGGCTACTTTGTACACAGCCACACTCAGAAGATCTGACCATCTTGATCAAAATGCAAAATGAGTTATTTCTTTGAATACAAAATTGAAGGTAGTAAAAGCATCTGCACAGTGAGTATCAATTTTCCTTACCTAATGGAAATTCCTAGAGAAATAAAAAATTTGACGACCACATTTATGTACATGCTATTTTGCTACTAAGCATGAATATTCGAAGGATAGCTTAGAGAAATAATAGGAGAATGCAGGGATATATGAAAAGTTCCTGCTCTGGGACGTGATGTTTCAAATTATTGTGTTTTGAGATTAAAAGATTAAACTTTGTATTGAAAGAGATGGAGGCATCCAATTCTAAAATCTGCACATTCTGTTTACTTATTACAGTTGCTGCAAAAGGATCCAACAACAAGGTTAGGACATGGGCGAAATGGAGATGAGCAGATCAAAAGTCATAAATGGTTTAGGTCAATCAATTGGAAAAAATTGGAGGCAAGAGAACTGGAACCAAAGTTTAAACCAGATGTGTCTGGGAAAGACTGTACTGCTAATTTTGACAAATGTTGGACAGCAATGCCCCCTAATGACTCACCAGCATCCACACCTACAGCAGGTGACCATTTCCAGGGCTATACTTATGTGGCGCCCAACCCTTGGCTTTCATCTGGTTCACTACAATGAACAAGGAAATCTGTACATTGATCTATGTATCAAAATAAGACAAGTAACCCATTTCTTCTTATGGTGAGCTTTCTCAGCTTACAAGTAACCAAAACCTTCTCTGACCATTGCAGAGAATACAGAATGTTTAGGGGCTCTGATATGACCCATTATGTTTGTGCAGCTTTGTTAGTTCTTGTTTTAAATTAAGGTCAACATTAACATATTTGTACAACCAGGGCCCTGAAGAGGGTGAGGGTGTATCACATATTTGACTTATTCATCAGAAGAGTTTGCATGTATGAAATTGTATTGTCTTATCTTATGCATACATAACTACGAGCTATTGAACACGTAGCTATCAACTCTTCTGCTTATAAGATCCAGAAAGATTGATACTTGTTGCCACC

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