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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_06635 LG1 97255228 97258761 hypothetical protein LR48
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/T 97255444 downstream_gene_variant
G/T 97255521 downstream_gene_variant
C/A 97255643 missense_variant p.Gly295Val
G/A 97256135 downstream_gene_variant
G/A 97256325 downstream_gene_variant
G/T 97256351 downstream_gene_variant
G/T 97256353 downstream_gene_variant
G/T 97256359 downstream_gene_variant
G/T 97256399 downstream_gene_variant
A/T 97256700 missense_variant&splice_region_variant p.Phe143Ile
A/G 97257152 downstream_gene_variant
T/G 97257188 downstream_gene_variant
T/G 97257190 downstream_gene_variant
C/T 97257298 downstream_gene_variant
C/T 97257353 downstream_gene_variant
C/T,* 97257419 downstream_gene_variant
T/C 97257637 synonymous_variant p.Glu84Glu
T/C 97258037 downstream_gene_variant
A/G 97258039 downstream_gene_variant
C/A 97258210 downstream_gene_variant
G/A 97258285 downstream_gene_variant
C/A 97258639 downstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_06635.1
MVAPLLLGIHTRHRQSPSCLYCIVLGIGQGTYSNVYRARDLEQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKLNVTCSNFYVDLITATAVVYFTVTLRFFSTKPLPCDPSSLPKYPPSKEFDAKVRDEEARRQGGAGVKGQRHDLERKGTRESRAIPAPDANAELVLSMQVWSFLVVKLTPLGPLTHRAAWAKAGKNQEDAPKVSMGGDLSTISGLVAARRSMLSDDRRERSASSQADAQKLISRFPGSFKEASESMTQQDQKNNHAHAPQKEEGRASSNKDSSLVGYGSKGHKIHYSGPLLVPSSNMDQMLKDHDRQIQEAVRRSRLDKAKMRRLQAEGNQISNSLFVSGR*


CDS Sequence:
>Vu_06635.1
ATGGTTGCACCGCTTCTACTCGGAATTCACACCCGCCATCGGCAATCACCTTCTTGTTTGTACTGTATTGTGTTGGGCATTGGACAGGGAACTTATAGCAATGTTTATAGAGCTCGAGATCTTGAACAAAAGAAGATTGTTGCTTTGAAAAAAGTGAGGTTTGATAATCTTGAGCCTGAGAGTGTTCGCTTCATGGCAAGGGAAATTCACATTCTGCGCAGGCTTGATCATCCAAATGTCATAAAATTGGAAGGCTTGGTCACATCAAGGATGTCTTGCAGCTTATACCTTGTTTTTGAGTACATGGAGCATGACTTGGCTGGACTTGCATCACATCCTGGACTGAAGTTAAATGTTACATGCAGCAACTTTTACGTGGACTTGATCACTGCCACAGCTGTGGTGTACTTCACCGTGACATTAAGGTTCTTCTCAACAAAGCCTCTACCTTGTGATCCCTCAAGCTTACCAAAGTATCCGCCTAGCAAAGAATTTGATGCCAAGGTGCGGGATGAAGAAGCTAGAAGACAAGGAGGAGCAGGAGTCAAGGGCCAGAGGCATGATCTTGAGAGAAAAGGCACAAGAGAATCACGAGCAATTCCTGCACCTGATGCCAATGCTGAACTGGTCCTGTCAATGCAGGTTTGGTCATTTTTAGTTGTTAAACTAACCCCTCTTGGTCCACTGACACACCGTGCCGCATGGGCCAAAGCCGGGAAGAACCAAGAGGATGCTCCAAAGGTTTCAATGGGGGGTGACTTATCAACAATATCAGGCTTAGTCGCGGCAAGGAGGAGTATGCTCTCTGACGATCGCAGAGAAAGGTCTGCATCATCACAAGCAGATGCCCAAAAACTAATAAGCAGGTTCCCAGGATCCTTCAAGGAGGCCTCTGAGTCAATGACGCAACAGGATCAGAAGAATAATCATGCACATGCTCCTCAAAAGGAAGAAGGAAGAGCCAGCAGCAACAAAGACTCAAGTCTTGTTGGATATGGCTCAAAGGGTCATAAAATTCATTATTCTGGGCCTCTGCTAGTTCCATCAAGCAACATGGATCAGATGTTGAAGGATCATGACCGGCAAATCCAAGAGGCGGTTCGAAGATCAAGATTAGACAAGGCAAAGATGAGAAGACTCCAAGCTGAGGGGAACCAGATAAGCAATTCATTATTTGTTTCTGGTCGTTGA


Promoter Sequence:
>Vu_06635::LG1:97258761-97260761(-)
TGACAATAATCCTAAATAATCTAACCCTAACCCCTTTTTTTTTAACCTCTCTCGTTAAAGCTGTTGCCATGTCTTCAAATTATTTTTTCTCAACTTAAAATTTACACGTCAAAACCTAATATTGCCACGCAATAAGATTACCTAGCCACGTAGGTAAGTTTTATTCAGGCGGACAACAACAGCGTTAAATATTTGACGTCATAATGAAAAAGAATTAACTTGAAGTGTTTTTTCAAAGTTGGGATCAATTATTACGTTTAAGAAAAAGGTAAGATCATTTTGAACACAATCTCTCAAACTAAGGACCAAAAACGGTATTAAACCTTAATTAATTTACACTATTTGAAGTATTTAAGTCCAAATACTAGTTTAAAATATAGTTTAATGTATAAAAAAATTAACATTATTAAATTAAGATGATCATATCAATTTATTTTGAAATATTAAAAACACTTAAGATTGAAAAGAAATAATTCTTGAGGGCTTAATTGATCCCTCTCACAATCTTCTATTTATAAGAATAAATTGATACACAAGTACATGATAAATAGGGTAACCCTAAACACAATATAATCATGATAAATAGGGTAATCCTAGACACAATATAATCATGATAAATAGGGTAACCCTTGACACACTATAATGATGATAAAATAGGATAAATATCCTAACAAAAACAAAGTTATATTAAAATTTTGAATATAAATAAATTCTGATTTTATATTTAAGAACTACAAAATATTTAATCTTTTTAATATTATGGATTTATTACATGTAAAGTATCAACGTCTATTATTATATATTATAATGAAATTCATTTATTAGTATCGATTTATCTACTATATAAAATAAGGAAAAATCTATATAAATAAGGAAAAAGTTTCTTTAAACCTCACCTCACCTCACCACTTTAAACCTCACCTCACCACTTTAGAAGTTGACCACCAATTTTGCTCGTAGACGCTAAATTGTCATCATCTCTGTTCACCGAGCAATGGATCGACATAATGCTGGCGGACTAACGGCTTTGCAGCAAGCAAAGCGTAGGCGCTATGACGCCAGACGATCGCTGGCGTTAGCCCAATTTGATTATGTTAAAGAACTCGTGAGAGACCACCGCCTTCAAGATGCGGCAAAAGAGGCTAAGAAAGCGAAGGTAATTCTCAAGGAAACCGAGAAGGAAGATGCTACCGAATAGCTTCGGAGGATGACGGTCTAAGATTTTTGTTCTTCTCAGTTCTTTTTTACGAGTCCAAGAACCGTTCTTTGTATCCCAAAATAGTTCGTTCTTCTGTGAGACTTAGGATGCTACAGCGATGTAACATTTTTGTTTTTCTAAGTTCTTTTGTTGCAAGAACCTAATTCTTTTGTATCCCAAAATAGTTCGTTCTTCTGTGAGACTTACTTTCTTTTTGTTCTTCTGGACTTTCTTTTTCTTTTTCAAGTTTTTGGAATTGCGTGTAGTCTCAATTACCCCTTTTCTTCGATAATCTGCTGTATTTTTAAGGTTTAATACCTACCTTTCGCAAAAACTGTTCAAGTTGGTTCACTAACGGTAGAACTGCCAGGTGTGCAATGTTTGATGACTTGGAACCTTTTATATGTGTTGGCAGTGTCACTTCATTATATGGGTTAAAAAAAAATTAATTTCTCAACCAGAAACCCTAGGGAGAGTTTGCTTCCCACTGCCTCTCACTGATTTGCCGCTGCAACAGGCCTCCACCCAACCAGCCACCGCGAGTTGTGGCCCAAGGCGTCGCCGGCACTGACGTTCGTTGCCGATCGAGGTGAGAGTTCCCCTCTTCCGCCGCTCGTCGCGCGATCGCTGCCACAATCTCTGTCGGCCACCGCACCAAGGTGCCTCTTCCTTCTCCTCTTCGCGCGAGGTTCTCCCTACGCCTCGTCTTAAGACGTTGATGCCAGAAAGGGTCGCCACTCCAATGCCGGCGATAAAACTCCTCTTCCTCTGTTATGCGAAGTCGAAGGTGAAATAAATCGTC


Gene Sequence:
>Vu_06635(-)
ATGGTTGCACCGCTTCTACTCGGAATTCACACCCGCCATCGGCAATCACCTTCTTGTTTGTACTGTATTGTGTTGGGCGTGAGTCTTGGGGCGTGAAAAATTGATTTTCTGATTGGTGTAGTGAATGTTTTCTGTTAAGCATTGGGTTGGGGAAAAAATGGGTTTATGTTTGGGTTGAACTTCTGGAGATGAAGGAGAGGGTGTTCAGAATTCTCAGGTTGTGATGGTAAGGTGTTCAGAATTCCCCTGATCTTTTTGACCCCCTTTCTCTTAATTATCTATATTTCTAAAGTCTACTCCATGCATGTGGCTGCAATGTGAAAAAGGAGAAACTGAGCTGAATTCTTATATTTTATAGGTGGCAAACAAAACACCCCAACTTTCCACTACCTCTTTTGGTTTTTAGTAAAAAAGTTGCCATGATTCTGAGCTGAATTCTCTTCAATAATCACGAGCTCTTCCTTCAAATTGTTGACCAAAATTGCTTAATTTTTTCTGCATAACCATTTTTAATGTCTAATCTGATGATAATTCTTGGTAAAGAAACTATCGCTAATTGATTTGGAAACCACCTCCCTCTTTATTTAATCAATGCACTTTTTGTCTGTTCTTCGATAACAATCTTAGGCAGTACATTTTGCTAGATACTGTTTTTATACTTGTTTTTGATCTTTATGATCTCATAGTATAACAGTTAACACAAATTTCTGGAAATTTATTAATGATTGAATATATACCACTTATGTTTGTCTGTCATATATCCTCAATTTCATGCTGAAATTATTTCTAAATAAAATTAAGTAGAATATGAGAATTGTGCATTTGTAGTTTTCAGATATTTTCAGTTATATTTCTCCTTGATTTCACGTTACTTCAATGTGAGCATATCTCCTGTATGCTTTGTAATCATGAATGATAAATTGATAATTTTTTCCTTTATCTAATGTGCAGATTGGACAGGGAACTTATAGCAATGTTTATAGAGCTCGAGATCTTGAACAAAAGAAGATTGTTGCTTTGAAAAAAGTGAGGTTTGATAATCTTGAGCCTGAGAGTGTTCGCTTCATGGCAAGGGAAATTCACATTCTGCGCAGGCTTGATCATCCAAATGTCATAAAATTGGAAGGCTTGGTCACATCAAGGATGTCTTGCAGCTTATACCTTGTTTTTGAGTACATGGAGCATGACTTGGCTGGACTTGCATCACATCCTGGACTGAAGTTTACTGAAGCTCAGGGAATTTCTTAAGCATCCTTATGTTTTATCTCTCTCTTTCCATTTTATTGCAAATCAAACCTATCATGTCTTCTAGGGAGAATATTGGTTCCTCTAATTTTTGTTTGATGTCATAGGCAATCAAAGATTTCTTTTCTATTGTGATGTTTATACTTTTAAGCTAATTGCTGATGCGCCCTCTTCCTAAATTAATTCCCTGAAATTTACTTTCTTTTTTTGTCTCCATTGAAAATGAGGCTAATTAAGGCAAGCGGTAGAAATTAAATGAAGAGTAAAATTTCCACTAAAGACTAACATTTAAATAAAAAAGGGCTACAAGATAACAAAAAAAAAAAAAAAAAACAGAGAAAAACAATCAAGTTTTAATTACTGATTTATTGAAGGGCGGAAATAAACCTATTTCAAAACAGAATGCTATCCTGCAACACAAATAAAAAATTAAGTAATTTCCTATTGGATCTTGGCAGGTTAAATGTTACATGCAGCAACTTTTACGTGGACTTGATCACTGCCACAGCTGTGGTGTACTTCACCGTGACATTAAGGGTTCTAATCTTTTGATTGACAACAATGGGATATTGAAAATCTCGTTATCTTATGTATTACTGCAAATATACACCACTATTGTGGCTATTGTCTCAACAGCCTTAATATGGTACAAAATTAATTTTTATAACCAAAAATTGATGTGTTGGTTGGTAGTTATTCACCATTTCTTGCTCAAGAAACGTTTTGCAGTGCATTTATGGTACTAGAGAATTTTTTTCAAACTTCAGTATGCACTGCTCTTAACCCTCTTCTATTGGTTTACTTGTAATTTAGTTCTTCTCAACAAAGCCTCTACCTTGTGATCCCTCAAGCTTACCAAAGTATCCGCCTAGCAAAGAATTTGATGCCAAGGTGCGGGATGAAGAAGCTAGAAGGTGTGTTCGATTTTGGTGTGGAATTGTATTCATTTATATTCAAATGATTTGTACAAATTGCATTTTTGAAGGTTACCTGTGTCTGTGTTTTGAGATAATCTGATTAATTAATCCATGTCATTGTTGTTGTGTCTATTTTTTTCTAAAATTTTGGTTATTTCCAAAGTGCAATGATTAACTTTGGGAAAATGGCAGAAATGAATCTTCTTGTAATTGTTCAAACTAAGTTTTCCACACACTCCCCAATGTCCCCTGCCCTGTAATATACTAAATTTTACTTGTAAAATGTATAGTGACTGCAACAACACTGTCAAGGTTACTTATGGAGCAGAAAAGAAAATATTTTTAATGTTCCTTATGATTCACAATACGTGGGTATACAGAAGCTAACAATAAGTGTAGCTGAAATATACTGGTTCTTAAAATCAGACTTGTGCTTATTACTTCTGTTAACATGTTCGCATTGGCTGGGCTCTTTTATTTATTGTCCTTAAGTGCTTGCTTATGGTTTTGGTTATGATGTTTGCAGACAAGGAGGAGCAGGAGTCAAGGGCCAGAGGCATGATCTTGAGAGAAAAGGCACAAGAGAATCACGAGCAATTCCTGCACCTGATGCCAATGCTGAACTGGTCCTGTCAATGCAGGTTTGGTCATTTTTAGTTGTTAAACTAACCCCTCTTGGTCATTGAGATTTGTCGTCGTTGTTTGTGGATCCCCCAGTTCATCAACACAAAAGAGCTTCCCATTCAGGTCCACTGACACACCGTGCCGCATGGGCCAAAGCCGGGAAGAACCAAGAGGATGCTCCAAAGGTTTCAATGGGGGGTGACTTATCAACAATATCAGGCTTAGTCGCGGCAAGGAGGAGTATGCTCTCTGACGATCGCAGAGAAAGGTCTGCATCATCACAAGCAGATGCCCAAAAACTAATAAGCAGGTTCCCAGGATCCTTCAAGGAGGCCTCTGAGTCAATGACGCAACAGGATCAGAAGAATAATCATGCACATGCTCCTCAAAAGGAAGAAGGAAGAGCCAGCAGCAACAAAGACTCAAGTCTTGTAAGTAGTTTTGAAATGTTTATCTGTTGCTAACTTTGTCTCCTAAGTTATTTCATCTTGGTTCTAGTTTTGTCTAAATGTTATGGTTGGATTATCTTATGACAATGTTGCAGGTTGGATATGGCTCAAAGGGTCATAAAATTCATTATTCTGGGCCTCTGCTAGTTCCATCAAGCAACATGGATCAGATGTTGAAGGATCATGACCGGCAAATCCAAGAGGCGGTTCGAAGATCAAGATTAGACAAGGCAAAGATGAGAAGACTCCAAGCTGAGGGGAACCAGATAAGCAATTCATTATTTGTTTCTGGTCGTTGA

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