Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_06632 LG1 97226929 97228118 PREDICTED: dof zinc finger protein DOF5.6
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, phloem or xylem histogenesis, procambium histogenesis, procambium histogenesis, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, root radial pattern formation, regulation of transcription, DNA-templated, procambium histogenesis, procambium histogenesis, procambium histogenesis, positive regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, root radial pattern formation, regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, DNA-binding transcription factor activity, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
G/A 97226937 synonymous_variant p.Leu320Leu
A/T 97226987 missense_variant p.Leu303His
C/A 97227012 missense_variant p.Ala295Ser
C/A 97227099 missense_variant p.Gly266Cys
G/A 97227151 synonymous_variant p.Val248Val
T/C 97227325 missense_variant p.Ile190Met
C/A 97227382 missense_variant p.Met171Ile
T/A 97227613 synonymous_variant p.Gly94Gly
A/G 97227616 synonymous_variant p.Val93Val
T/A 97227622 synonymous_variant p.Ile91Ile
T/A 97227686 missense_variant p.Gln70Leu
G/T 97227691 synonymous_variant p.Leu68Leu
C/G 97227721 synonymous_variant p.Thr58Thr
A/T 97227896 downstream_gene_variant
T/A 97227901 downstream_gene_variant
A/G 97227902 downstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_06632.1
MLTKKLVAAYGTIHEECGVDSSSPSADMLPCSRPMTERRLRPSQEQALKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSTKKHNDHQPAINQNQTQPAGPSYIHNHKDLQHSFLDVQFSHLNNILGTNAGVLGNPNFMDSKYSMGMLENPGHIDFMESGLDGMNIIRGSTRSLDVLENSDMSVGGGGVGLGDMSGYNGLPLNYQGLSSAAFGSMSLDGGISNVGSYIMDSCQRLMLPYDGGHNILNGSVDVKPNPKLLSLEWQDQACSEAEKVSLGYLNGSGSWSGYGSSTTNPLV*


CDS Sequence:
>Vu_06632.1
ATGTTAACCAAGAAGCTAGTAGCAGCATATGGCACAATTCACGAGGAGTGTGGGGTGGATTCTTCTTCACCATCTGCCGACATGCTTCCATGCTCGAGACCGATGACAGAGAGGAGGCTAAGACCCTCACAAGAGCAAGCCCTCAAGTGCCCTAGGTGTGAATCAACACACACGAAGTTCTGCTACTACAACAACTACAGTCTCTCTCAGCCCAGGTATTTCTGCAAGACATGTAGAAGGTACTGGACCAAAGGAGGCACTCTCAGGAACATACCTGTTGGAGGTGGTTGCAGAAAGAACAAGAAAGTTTCAACTAAGAAACACAATGACCACCAACCAGCTATTAATCAAAACCAAACACAACCTGCAGGACCCTCTTATATTCATAATCACAAAGATCTTCAACATTCCTTCTTGGATGTGCAGTTTTCCCACCTAAACAATATACTTGGGACTAATGCTGGGGTACTGGGAAACCCTAATTTCATGGATAGTAAGTATAGCATGGGCATGCTAGAGAACCCTGGGCATATTGACTTCATGGAAAGCGGGTTGGATGGTATGAATATAATTAGGGGTTCAACTAGGAGTTTGGATGTTCTTGAAAATAGTGATATGAGTGTGGGTGGTGGTGGTGTTGGGCTTGGTGATATGAGTGGCTACAATGGATTGCCATTGAATTATCAAGGTCTTTCTAGTGCAGCATTTGGAAGCATGTCCCTTGATGGAGGCATTAGCAATGTCGGAAGTTATATAATGGACTCTTGCCAGAGACTTATGTTGCCCTATGATGGAGGTCATAACATCCTTAACGGTTCAGTTGATGTGAAGCCAAACCCTAAGTTGCTGTCCCTTGAATGGCAAGATCAGGCTTGCTCTGAGGCTGAAAAAGTGTCATTGGGATATCTCAATGGTTCAGGATCATGGAGTGGCTATGGATCTTCCACAACAAACCCTCTGGTCTAG


Promoter Sequence:
>Vu_06632::LG1:97228118-97230118(-)
CAGTAGCTGAAAACTAGAAAGTTTTTTTGGACATTCCACAAGACAAAAGCAAATAAAGAAACAAGACCTATAATACACACTGATCAAGGAGCAATGATATCATGCTGATGATTGAAACAGTAGTAATCCATTCATCTATCTTTGTACTTCATAGATGATTGAAAGATATAATATATTGATCCACAACAAACACAAATACTCACTCACTCACTCATGCATCAACAAAACAAGAAGAAGAACGCTCTGAGGTGAGGTGTAGGAGGGTAACGTGGACTCACTCTCACTTTATTCACCTGACACAGAGTGTGTACTTGGGGTTTGGTTCCTGTAGATTAGGTTGGATTTTGTTCCTCACTCACACCAATGCCATAAGTGGATATCATAAACTCCCACAGTACTATACCTTTCTCCTTCTTTCAGCTGTCACCCTTCACATACAAGTTTGTCAGTTTATTCCCCAAAACTTCCCCAGTCCAACAATATCGCTATCAATTGAATGACATTACACTCATGGCGAGAACTAAAATAACATATTGTTTCATTATTTCAAAATTCTATTACATAACAGAAAAAGCAGCGAGTTATTTAGGAACATTTTCTGTTCTCCTACTTCAAATCACAAACAGGCTTGTAGAATGCTGATATATTAATTAATCAGTACTAAATTTGAAAAGGATCTTGCTTAATTATTCATTTGAAATTTTAGTTCTACTAAAGTCTGCAATTTTGCTCTAATCATCAAACTCTGCATATTTCATTTCTTGTATTTTCATGTTTGAATTACTTTTTGGAAGATACCTTAAATGAATACGTACAATCAAACAAAAAAAGCATGAAAGTAATGGTTAGACAACATATCTTTTGCTCAGAAGATCAAAATCATGAAGAGAGAAACACAGAAGTTGAAATGAAAAGCTAAGAAAACCATGATTATAATTTAGGCAATAAATAAGTAGGTAGGAAGAGCATGAAATGGAGGGAAAAAAAGATGAAAAACATTAAGGAGGGAGAATGTAGGAATATATGCCTTGCTTGTGGGAGGAGGGAGAGAGGGTCCAGTGCTTTTGGGGTCCACAAGTAGAGTGCTCTTTCGGTATGTGTTCTTTATCGAGGACCCAAATATTCTCACCTAGCTTCTGTCACTTCATTCAGACATCTCTGTAGTGCCAAGTATGTTTGTGTCTGTCTTCTCTACCTCTCACAGTTACCTCTCCAACGGCTACACTTTGCTTAATGCCTATCTCATTCCATACCAACCACTAACTGTCACTGTCACACTCAATATTTATCTGGTCAAGCTGACCTAAGCAGTGGCCCCACATGTTATAAGGGCCCACTATTTTTTGTCACCGACGGGAACTTATCACTCACACCCTCTCTCTATAAAGTACAATATCTCACCGCAACTCATTCCTCTCACCTTTTTCTTCCTTCTTATTCACTGTCACTTCCCAACTAACACTCACATTGTCGCACAACACAATCACACTATACCACGAAACTCATCGGACGACACTGCCTTCCTCAGTTCTTCAACTACACTTTTCTTTCGCTGTTCCAAGCTCATCATACACTACTGCTAACAAGGGCACTTATTAAGATAGTAACAAACTTTGTTCATCAGTACACAAGTTTCCATTTCTCCCAGCTCCTGGATTTTTCTTGTAAATGGGTTTTTCCTCTCTCCATGTCTGCATGAATTCATCAGATCAATGGCTGCAGGTATGCAGGAGTATATCTATGAAAGGAATATGTTTGCTTCTACTTTTCAAAACTCCCGAGAGCCATATTGTCATACTGATATATATATATATGTGTGTGTGTGTGTGTGTACTTTCTGTGCGAATTAATGAGTAGTCATTATAACTTGGCATTCCTGCTCTAGTAGTACTTGTTATTTATATTAAGTCTTCATATTTCACACCACAGTAGTGAAATACAACGGTTTGACGAGAGTTTTGAGCTTTTAGTTGATCAAGATGTATAGTTAGAATTGTAAA


Gene Sequence:
>Vu_06632(-)
ATGTTAACCAAGAAGCTAGTAGCAGCATATGTATGTATATATATGTCAAGTTGCACTATGCAATTATCTGTTTAAATTAAAATGGTTGCTGCACGAAAGTGAATGGGGGAGTTGGAAACGGACAAGGAAAGAAAGAAGAGTGAGAATTAGCAGAAGAATAAAGAGAATGTCTGAATCCAAAATAAGACAAAATTGACAGTACGCAGCACATTTTCCTATTCATTAATTATTGTTTGTTTTGTATAAAATGTCAGGGCACAATTCACGAGGAGTGTGGGGTGGATTCTTCTTCACCATCTGCCGACATGCTTCCATGCTCGAGACCGATGACAGAGAGGAGGCTAAGACCCTCACAAGAGCAAGCCCTCAAGTGCCCTAGGTGTGAATCAACACACACGAAGTTCTGCTACTACAACAACTACAGTCTCTCTCAGCCCAGGTATTTCTGCAAGACATGTAGAAGGTACTGGACCAAAGGAGGCACTCTCAGGAACATACCTGTTGGAGGTGGTTGCAGAAAGAACAAGAAAGTTTCAACTAAGAAACACAATGACCACCAACCAGCTATTAATCAAAACCAAACACAACCTGCAGGACCCTCTTATATTCATAATCACAAAGATCTTCAACATTCCTTCTTGGATGTGCAGTTTTCCCACCTAAACAATATACTTGGGACTAATGCTGGGGTACTGGGAAACCCTAATTTCATGGATAGTAAGTATAGCATGGGCATGCTAGAGAACCCTGGGCATATTGACTTCATGGAAAGCGGGTTGGATGGTATGAATATAATTAGGGGTTCAACTAGGAGTTTGGATGTTCTTGAAAATAGTGATATGAGTGTGGGTGGTGGTGGTGTTGGGCTTGGTGATATGAGTGGCTACAATGGATTGCCATTGAATTATCAAGGTCTTTCTAGTGCAGCATTTGGAAGCATGTCCCTTGATGGAGGCATTAGCAATGTCGGAAGTTATATAATGGACTCTTGCCAGAGACTTATGTTGCCCTATGATGGAGGTCATAACATCCTTAACGGTTCAGTTGATGTGAAGCCAAACCCTAAGTTGCTGTCCCTTGAATGGCAAGATCAGGCTTGCTCTGAGGCTGAAAAAGTGTCATTGGGATATCTCAATGGTTCAGGATCATGGAGTGGCTATGGATCTTCCACAACAAACCCTCTGGTCTAG