Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_06625 LG1 97147276 97148919 hypothetical protein
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of synergid differentiation, pollen tube guidance, pollen tube guidance, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of synergid differentiation, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of synergid differentiation, pollen tube guidance, regulation of transcription, DNA-templated, pollen tube guidance, pollen tube guidance, pollen tube guidance, regulation of embryo sac central cell differentiation, regulation of transcription, DNA-templated, pollen tube guidance, pollen tube guidance, pollen tube guidance, regulation of synergid differentiation, pollen tube guidance, pollen tube guidance, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of synergid differentiation, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, pollen tube guidance, pollen tube guidance, regulation of transcription, DNA-templated, regulation of synergid differentiation, regulation of synergid differentiation, regulation of embryo sac central cell differentiation, regulation of embryo sac central cell differentiation, regulation of synergid differentiation, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of synergid differentiation, pollen tube guidance, regulation of transcription, DNA-templated, pollen tube guidance, regulation of transcription, DNA-templated, embryo sac development
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   sequence-specific DNA binding, sequence-specific DNA binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA binding, transcription cis-regulatory region binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, DNA-binding transcription factor activity, RNA polymerase II-specific, transcription cis-regulatory region binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
G/A 97147327 missense_variant p.Val18Met
T/A 97147614 synonymous_variant p.Gly113Gly
G/C 97147656 synonymous_variant p.Val127Val
A/C 97148148 intron_variant
T/A 97148206 intron_variant
G/T 97148462 missense_variant p.Arg293Ile
G/C 97148619 synonymous_variant p.Leu345Leu
G/T 97148626 missense_variant p.Asp348Tyr
A/C 97148725 missense_variant p.Ile381Leu
C/T 97148875 synonymous_variant p.Leu431Leu
G/A 97148895 missense_variant p.Met437Ile

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_06625.1
MDIQGNLTENQASQPMHVQENCLKPSMGDQLPFGVPSSQGFLQDFHHIDHFPVNDGSSSNPIFLQHTPNFDPFDHNVNCESAPPDFEVFECKPFAESNGSAHVHLMHNFQYVGYSLNLPRTNQLDMVVANQRFLPFSALETKPLNFVAPDEISCISPPNFYKKVGLNKNLRESSSTRRTFKARKKSNIVKGQWTSDEDRLLIQLVDQYGVRKWSHIAQALPGRIGKQCRERWHNHLRPDIKKDMWTEEEDKILIQAHAEIGNKWAEIAKKLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGSLLQEYIKSLNLDQNPPMDYRKKSVKNANAKTNNNGKAAAELLCGDQFCSNGQLVTKYDFNEVPDFCLDDNLFEEGCSIDSLLDDIQSASTMDDKDFDGKVQCAPTVEGKQSHHHHTEITMGIEVKKELDLVEMMSHHVNEK*


CDS Sequence:
>Vu_06625.1
ATGGACATTCAAGGTAACCTCACAGAAAACCAGGCCTCGCAGCCAATGCATGTGCAAGAAAACTGCCTGAAACCCAGCATGGGGGATCAGCTTCCTTTTGGAGTTCCTTCCTCACAGGGTTTCTTGCAAGATTTTCATCATATTGATCACTTTCCTGTGAATGATGGCTCCTCATCCAATCCTATTTTCTTGCAACATACTCCAAATTTTGATCCCTTTGATCACAATGTAAACTGTGAGTCTGCACCTCCTGATTTTGAAGTTTTTGAGTGCAAGCCTTTTGCTGAGAGCAATGGTAGTGCACATGTTCATCTGATGCACAATTTCCAATATGTAGGTTATAGTTTGAACCTCCCTCGGACGAATCAACTGGATATGGTGGTGGCAAACCAGAGATTCCTGCCCTTCAGTGCTCTAGAAACGAAACCTTTGAATTTTGTTGCACCAGATGAAATCTCATGCATATCCCCACCTAATTTTTATAAGAAAGTTGGTTTGAATAAAAACCTTAGGGAATCCTCTAGCACTAGGAGAACATTCAAAGCTCGGAAGAAATCCAACATAGTGAAGGGGCAATGGACATCAGATGAAGACAGATTGTTGATTCAACTGGTCGACCAATATGGAGTGAGGAAGTGGTCACACATAGCTCAGGCGTTGCCTGGAAGAATAGGGAAACAATGCAGAGAACGATGGCATAACCATTTAAGGCCAGACATTAAGAAGGACATGTGGACTGAAGAAGAGGATAAAATACTGATCCAAGCTCATGCAGAGATAGGAAATAAGTGGGCAGAGATTGCAAAAAAGTTGCCTGGAAGAACTGAGAACTCCATCAAAAACCATTGGAACGCAACAAAGAGAAGACAATATTCCAAGAGAAAATGTCGTTCAAAGTACCCTAGAGGCTCTCTTCTTCAGGAATATATCAAGAGCTTGAACCTAGACCAAAATCCACCCATGGACTATCGAAAAAAATCTGTTAAAAATGCCAATGCAAAGACAAACAATAACGGCAAAGCAGCAGCTGAGCTCCTGTGTGGTGATCAATTCTGTTCCAATGGGCAGTTGGTGACAAAGTATGATTTTAACGAGGTCCCAGATTTTTGTTTGGATGATAACTTGTTTGAAGAGGGGTGTAGCATTGATTCTCTGCTAGATGATATACAAAGTGCTTCTACTATGGATGACAAAGATTTTGATGGAAAAGTACAATGTGCTCCTACTGTGGAGGGAAAACAATCTCATCATCATCACACTGAGATAACTATGGGGATTGAAGTTAAGAAGGAACTGGATTTGGTGGAGATGATGTCACATCACGTTAATGAAAAGTAG


Promoter Sequence:
>Vu_06625::LG1:97145276-97147276(+)
TCTCACAACGACTGGAGATGACATGAGAGAAGTGTTGAAATATTTCTTGCTTTTCTGATGTAACATTTTCTTAGCTATGGAATTATGTTCTTCATAATACATTATACTACCGGACATGTCCAGTACTATTTTATGCTCACTTTAGTACTCCTTCAAGGTATAGAACTCTCTTTTCCTTAGAATAGTTCCAGCACATCTAAACAGAAGTTAAATACAAGCACACAAATATTTCATATATCTAATTTACAAAATAAAACTGAAGTTACTGCTACTTCTTTCAATCTTGATGTGTGTTCAGTCTCTATTATCGCAAACTAAAAACAAAATAACACAACTATGTATGGTAGTTCACTCAACGCCATATGGGATGTGAATCTCCATCCTGCACAAAAAGTTGAAACGTTTTAGTTAATATTATTTGTCTTTCTTGTACAAAATGTGATCAGACATTTTCTTACAGAAGCAACAGACATATTTTGTTCCCGCACTTCTTTATTTCTCAAGTAAAATAATGAAAAATTTGCTAACATTGTTTTCTGGTATATGAAATATGGAAAAGGCTAATTAATATGAAACTGCCTTTCTAGAGATTAGAAAAAAAATAAATCTTTTTTTGGTTGTCTTTAATTCCCTCCATACCCTTTGAACAATATATGTGTATACACCCTTTGCGTAGAATCTTTATTTATTGAGGTTCTCCATAGCTCACAAATTTATACCAGTCTTTCTATTTAAATATTTTACTTTTTCAAAAATACGTTTTTTTTTAATATTAAAACTGAATGGACTAATTAACATAACCTTTTAAAAAAATTTATAGTACAAACTAAATAATATTCGTAAAGTAAGAACTTTTTTAGTGTGGACTAAAGATGTAGCTGAAATAATCTTAAATCAATTAATCACATGTTTAATATCTAATAAAAAATTAGTCTGGCTTTTTTTGGGGGAAACTGGATCTTTCTTTTTGTGATTTTATTTCTATTTAAAGCTGATTATTATGAGAATGATCCTTCGCCATTAACTGTCTTGTTTTGCAACGTTTAAACCTTAAATTAAATAGAAGTTGTTAACTATGGTCTGTTACTTCACAAGAATTTTTTCAGGTAAGGGACTATTATGTATTGCGTGGGTAAAAACTGTTAAGAGTGTTAACTCAGAATTAACGATATGTTAGGTGCAGTAAATTTTAAGCACAAATATCATTATAATTAACTACATTTCAAGTTAACTAGATTTATTTCTCCAAAAAGATTAACTAAGAATGTTCGTTCTATATTTGAATTAATTTATTTTGCATCAAAATAAGTTTCGATTAAAACTTTATAGATTTTCTTCTTTATAAAAATGAGTGGAAATTCAGAATAAATGAGCATGTACCTAGTCTTTAACATCAAACTAATAAATGAGTGGGAATTCAGAATATCAGTGGAGTGAAAGTGCTCCCTTATTTACAAGCCATTCAACAAGGTTTAGGGTTTAGGAACATGTTAATTTTTGTTATTCATGCTTCAGAACATTCTCAATCTAGGACTTTTCTGGTAGGAGATCTTGATCATAGTTGTATAATGTACCTGTGTTTTTTAGGACTTTTCCCTCTTCAAGCCTGAAAAAAGAACAGCTTGAAATGTTTTTGGACATTTAATGGTTTCTGGACATTATCCCTACAAGAGAAACAACGACAAATACTAAAAATAATATAAATGGAGTCAAATTATGAATGTTAATGTGGGCTTTGTAGAATTCATGGATTAATTGCATACAACTATACATAATATCTAGTCACAGAAGGTTTGACCATAACCATGCTAATGAAGTAACCGCAAGAATATTATTATACTTGAACTGTAACATATGGTGAAGTATCTAGATGTGAAACAATCTTGGCCATTTGATGCTTCGTATCAATTTCCATGCAATTAATGCATTATCAATCTCTCTCTCCTATTAAGGAACACAAACGGAGATGGCTTGAAACGCAGTTTCTGTTACTCCGCTCA


Gene Sequence:
>Vu_06625(+)
ATGGACATTCAAGGTAACCTCACAGAAAACCAGGCCTCGCAGCCAATGCATGTGCAAGAAAACTGCCTGAAACCCAGCATGGGGGATCAGCTTCCTTTTGGAGTTCCTTCCTCACAGGGTTTCTTGCAAGATTTTCATCATATTGATCACTTTCCTGTGAATGATGGCTCCTCATCCAATCCTATTTTCTTGCAACATACTCCAAATTTTGATCCCTTTGATCACAATGTAAACTGTGAGTCTGCACCTCCTGATTTTGAAGTTTTTGAGTGCAAGCCTTTTGCTGAGAGCAATGGTAGTGCACATGTTCATCTGATGCACAATTTCCAATATGTAGGTTATAGTTTGAACCTCCCTCGGACGAATCAACTGGATATGGTGGTGGCAAACCAGAGATTCCTGCCCTTCAGTGCTCTAGAAACGAAACCTTTGAATTTTGTTGCACCAGATGAAATCTCATGCATATCCCCACCTAATTTTTATAAGAAAGTTGGTTTGAATAAAAACCTTAGGGAATCCTCTAGCACTAGGAGAACATTCAAAGCTCGGAAGAAATCCAACATAGTGAAGGGGCAATGGACATCAGATGAAGACAGGTGCATAATGGATTTAAACCTTTGCTTTTAATGGCTATTTATATAATCTCGTTACATATATTTTTTTTTTCACACAATGGATTTGACCAGTTTCTGTCGGAAAAACCACACTGTTTTCCATAAACAGATTGTTGATTCAACTGGTCGACCAATATGGAGTGAGGAAGTGGTCACACATAGCTCAGGCGTTGCCTGGAAGAATAGGGAAACAATGCAGAGAACGATGGCATAACCATTTAAGGCCAGACATTAAGGTTTCGATTTATTTGTCATAAAAATACTAATGATACACCTCTCACTACGAATGGTTGAAGTTTATTCCTCTTAATCCACATAAGACCTTGATATACTTTTAAATATGTTACACTCTTGAAATTCATTGTGCTACAATATTGTATAAAAGAAAGACACTAGTTTTTGTGACATTTTGCAGAAGGACATGTGGACTGAAGAAGAGGATAAAATACTGATCCAAGCTCATGCAGAGATAGGAAATAAGTGGGCAGAGATTGCAAAAAAGTTGCCTGGAAGAACTGAGAACTCCATCAAAAACCATTGGAACGCAACAAAGAGAAGACAATATTCCAAGAGAAAATGTCGTTCAAAGTACCCTAGAGGCTCTCTTCTTCAGGAATATATCAAGAGCTTGAACCTAGACCAAAATCCACCCATGGACTATCGAAAAAAATCTGTTAAAAATGCCAATGCAAAGACAAACAATAACGGCAAAGCAGCAGCTGAGCTCCTGTGTGGTGATCAATTCTGTTCCAATGGGCAGTTGGTGACAAAGTATGATTTTAACGAGGTCCCAGATTTTTGTTTGGATGATAACTTGTTTGAAGAGGGGTGTAGCATTGATTCTCTGCTAGATGATATACAAAGTGCTTCTACTATGGATGACAAAGATTTTGATGGAAAAGTACAATGTGCTCCTACTGTGGAGGGAAAACAATCTCATCATCATCACACTGAGATAACTATGGGGATTGAAGTTAAGAAGGAACTGGATTTGGTGGAGATGATGTCACATCACGTTAATGAAAAGTAG