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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_06617 LG1 97078949 97081858 PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1
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Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/G 97078983 missense_variant p.Ala12Gly
T/A 97079103 missense_variant p.Val52Glu
G/C 97079113 synonymous_variant p.Ser55Ser
T/C 97079206 synonymous_variant p.Asn86Asn
A/C 97079304 missense_variant p.Tyr119Ser
T/C 97079345 synonymous_variant p.Leu133Leu
T/C 97079529 missense_variant p.Val194Ala
T/G 97079634 missense_variant p.Phe229Cys
C/G 97079665 missense_variant p.Asp239Glu
C/G 97079807 missense_variant p.Gln287Glu
T/G 97079821 synonymous_variant p.Val291Val
G/A 97079842 synonymous_variant p.Leu298Leu
G/A 97079924 missense_variant p.Val326Ile
G/A 97079991 missense_variant p.Arg348Gln
C/G 97080032 missense_variant p.Pro362Ala
C/G 97080033 missense_variant p.Pro362Arg
C/A 97080177 missense_variant p.Pro410His
T/C 97080448 synonymous_variant p.Asp500Asp
A/C 97080469 synonymous_variant p.Pro507Pro
C/T 97080727 synonymous_variant p.Asn593Asn
C/T 97080962 synonymous_variant p.Leu672Leu
C/A 97081630 synonymous_variant p.Ser894Ser
A/T 97081633 synonymous_variant p.Thr895Thr
C/T 97081642 synonymous_variant p.Cys898Cys
G/T 97081648 synonymous_variant p.Val900Val
C/T 97081657 synonymous_variant p.Tyr903Tyr
C/A 97081660 synonymous_variant p.Ile904Ile
C/A 97081666 synonymous_variant p.Leu906Leu
G/A 97081669 synonymous_variant p.Arg907Arg
C/A 97081672 synonymous_variant p.Ile908Ile

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_06617.1
MKLIPVKHSAMASVWMCHFFLLLSILDTSFIATMANNATDSYWLIRIKSELVDPSGALGNWSPTAHVCNWNGITCAVDQEYVIGLNLSGSGISGSISVEFRHLSFIQTLDLSSNSLSGYIPSELGQLQNLRILQLYSNDLSGNIPAEIGNMRKLQILRIGDNMLTGEIPPSIANMSELTVLAIGYCHLNGSIPVGIGKLKHLISLDLEMNRLSGPIPEEIQGCEELQNFAASNNMLEGDIPFSMGSLKSLKILNLANNSLSGSIPPALSHLSNLTYLNLLGNKLHGQIPSVLNSLIQLQKLDLSKNNLSGSIPLLNVELQSLETLVLSDNALTGSVPSNFCLRGSKLRELFLARNMLSGKFPLELLNCPSIQQLDLSDNSFEGELPASLDKLNNLTDLVLNNNSFVGPLPPEIGNISSLEGLFLFGNFLTGKIPTEIGRLQRLSTIYLYDNQMSGLIPREITNCTSLEEIDFFGNHFTGPIPETIGKLKKLVVLHLRQNDLSGPIPPSMGYCKNLQILALADNILSGSIPSTFSYLSELTKITLYNNSFEGPLPHSLSSLKSLKIINFSHNKFSGSFFPLTGSNSLTILDLTNNSFSGPIPSTLANSRNLSRLRLGQNYLTGSIPSEFDQLTELNFLDLSFNNLTGEMPPQLSNSKKIEHILMSNNRLSGKLPVWLGSLQELGELDLSYNNFSGRVPSELGNCSKLLKLSLHHNNLSGEIPLELGNLTALNVFNLQRNGFSGPIPPTIQQCTKLYELRLSENFLTGTIPVELGGLAELQVILDLSKNLFTGEIPPSLGNLVKLERLNLSFNQLEGKVPPSLGKLTSLHVLNLSNNHLEGQIPPTFSGFPLSSFLNNHGFCGPPLRSCSESTAQGKMQLSNTQVAAIIVAIVFTSTVICLVMLYIMLRIWCNWRKVAISSAEGGTVAHKARNGEYWNMNSFGLIPSPDKQNSAASSFYNLKMETMENAHM*


CDS Sequence:
>Vu_06617.1
ATGAAACTCATACCTGTAAAACATTCTGCAATGGCTTCCGTTTGGATGTGCCATTTCTTTCTGTTACTGTCCATACTAGATACTTCTTTTATTGCAACTATGGCCAATAATGCAACAGATTCCTACTGGCTTATCAGAATTAAATCAGAGTTGGTAGATCCATCGGGAGCACTTGGCAACTGGTCTCCGACAGCTCATGTCTGCAACTGGAATGGAATAACATGTGCAGTTGATCAGGAATATGTTATTGGCCTGAATCTGTCTGGTTCAGGAATATCCGGTTCCATTTCAGTTGAGTTCAGACACCTCTCTTTTATTCAAACACTTGATTTGTCTTCAAATTCTCTTTCTGGCTACATCCCTTCGGAGCTGGGTCAGCTTCAAAATCTAAGAATATTGCAACTATACTCAAATGATCTCTCTGGGAACATTCCTGCAGAGATAGGTAACATGAGGAAGTTACAAATTCTTAGAATAGGTGACAACATGTTGACTGGTGAAATTCCACCTAGTATTGCCAATATGAGTGAATTGACAGTTTTGGCAATAGGATACTGCCACTTGAACGGAAGCATACCAGTTGGGATCGGTAAATTGAAACATCTAATATCCCTTGATTTAGAAATGAACAGACTCAGTGGCCCCATACCTGAAGAGATTCAAGGCTGTGAAGAGCTCCAAAACTTTGCAGCATCAAACAACATGCTTGAAGGAGACATACCTTTCTCTATGGGGTCGCTTAAATCATTAAAAATTCTGAACCTGGCCAATAACAGTTTGTCTGGGTCAATTCCTCCTGCTTTGAGTCATCTTTCTAACTTGACATACCTGAATTTGCTTGGAAACAAACTACATGGACAAATCCCTTCTGTTCTTAATAGTCTGATTCAGCTGCAGAAGTTGGACTTGTCCAAAAACAACCTCTCTGGATCAATACCTCTCCTTAATGTAGAATTGCAGAGTCTTGAAACTCTTGTTCTGTCTGATAATGCTCTGACTGGTAGCGTTCCAAGTAACTTCTGCCTCAGAGGTTCAAAGCTTCGGGAACTCTTTTTGGCTAGAAACATGCTCTCTGGCAAGTTTCCTTTGGAGTTGCTCAACTGCCCCTCAATCCAACAGTTGGACCTTTCTGATAACAGTTTTGAAGGAGAACTTCCTGCAAGCCTGGACAAACTGAATAACCTCACAGATCTTGTTCTCAACAACAACAGCTTTGTTGGACCTCTCCCTCCTGAAATTGGAAACATTAGTAGCTTAGAGGGTCTTTTCCTATTTGGTAACTTCTTGACAGGTAAAATTCCAACGGAGATTGGAAGGCTGCAGAGATTGAGCACCATTTACCTCTATGACAACCAGATGTCTGGACTCATACCAAGAGAGATAACAAACTGCACAAGCTTAGAGGAAATTGACTTCTTTGGAAATCACTTTACAGGGCCCATTCCAGAGACTATAGGTAAGCTCAAGAAATTAGTTGTTCTGCATCTTAGGCAGAATGATTTGTCTGGTCCGATCCCACCAAGCATGGGGTACTGTAAAAACCTTCAGATATTGGCCTTAGCAGATAACATATTGTCTGGTTCCATTCCATCTACATTCAGTTACCTCTCGGAGCTCACCAAAATTACCCTTTACAACAACTCCTTTGAAGGACCTCTCCCTCATTCACTCTCTTCTCTCAAAAGCCTGAAAATCATCAACTTTTCACACAACAAGTTCAGTGGAAGTTTCTTTCCTCTCACTGGTTCAAATTCTCTAACCATTCTGGACTTGACCAACAACAGCTTCTCAGGTCCCATCCCTTCCACTCTAGCCAATTCTAGAAACCTCAGCCGTCTCAGACTTGGACAAAATTATCTCACTGGAAGCATTCCTTCTGAATTTGACCAACTCACTGAGCTCAATTTTCTTGATTTATCATTCAACAATTTAACAGGAGAGATGCCACCTCAACTCTCAAACTCCAAGAAAATTGAACACATCCTCATGAGTAACAACAGGTTGAGTGGCAAACTACCTGTTTGGTTGGGAAGCTTACAAGAACTTGGTGAGTTAGATCTCTCATACAATAACTTCAGTGGTAGGGTACCTTCTGAGCTTGGTAACTGCTCAAAATTGCTCAAGCTTTCTCTCCATCACAACAATCTGTCCGGTGAAATCCCCTTAGAGCTTGGAAACCTCACTGCCCTCAATGTCTTCAATTTGCAAAGGAACGGATTCTCTGGCCCCATTCCTCCGACAATTCAGCAATGCACAAAACTGTATGAGCTTAGGCTCTCAGAGAACTTTTTAACAGGTACCATACCAGTTGAGCTAGGAGGGCTTGCTGAGTTGCAAGTGATTTTGGACTTGAGTAAAAATCTCTTCACTGGTGAGATTCCACCATCTCTAGGAAACCTCGTGAAGCTAGAAAGACTCAACCTCTCTTTCAACCAACTTGAAGGGAAAGTTCCTCCTTCACTGGGCAAACTCACAAGCCTGCACGTGTTGAATCTCTCAAACAACCATCTTGAAGGCCAGATTCCTCCAACATTTTCAGGATTCCCACTAAGCTCATTCCTGAACAATCACGGCTTCTGTGGCCCACCACTGAGATCATGCTCTGAATCCACGGCACAGGGGAAAATGCAGCTATCAAACACACAAGTGGCAGCAATCATTGTGGCCATTGTGTTTACTTCCACAGTGATATGCTTAGTGATGTTGTACATCATGCTCAGGATCTGGTGCAACTGGAGAAAAGTTGCCATTTCGAGTGCAGAAGGTGGCACTGTTGCCCATAAGGCAAGAAATGGAGAGTATTGGAATATGAATTCATTTGGGTTGATTCCTTCACCAGATAAGCAGAATTCAGCAGCATCTTCCTTCTATAATCTTAAAATGGAGACCATGGAAAATGCACATATGTAA


Promoter Sequence:
>Vu_06617::LG1:97076949-97078949(+)
AGCGTTAGGAAAGGGAAAAAGGTAATTATTTGTACGAAGCGTAGGCACCTAAACTTTTTGTAGTAGTGACCACATAGTGGAAGTATAGAAGCGTGAATAAAAGAGCAGCAGCATCTTGAAAACAAGCACTATTGGGTTAGTACCAAAGTAGATAAAAATCTCCATTCACATTTTTCTTCTAACAGTCCCATAAATACCTACAATATTGGGAAAACGAAAAATAAGAAAAATGTTAGGAAAACTCTTTTACAATAAAGCGTAAAAAGTAGTAAAATAATATATTACATCATGAATATATATTTAAATAAATTTCTCTGTAAATATTTATAAAATAAAATAAACTTCTCTAAACTGTAAATTTAACTTATGTATTAAAAAATAAACGCTTACATTTTTAAAAAAAAACATAACTACCAATTGACTAACACACAAACTAATTTTTATGTTTAAAGAAGATTATTTTTGTTATTTCATACTTTCTTATCCCCTTTGAGAAAGTTTCATACTCATAGTGATGAAATAATTGAAGTTTTTAGTACAATGTAATGTGATGTTTCCTTTTTGAGGGGTTGCTTATGCTTGAATCATGGGAAACTGGGACGAAGGCGTGGATTGTATAAAGATAACGCTGAAAGCTAAGTAGTGAGCTGAATATGAAAGATAAGATTTGAGGCGCTTTTGCCTTCATGTATTTTGGCTTATATACATTTATCGCCAATCAATGATGTTTGAACCGAAGATTATTGCTTCATTGAATCAACTACGATAATGCGATATAATTTTAGTGTATAAACTATTCAGTATAATACACCAAACCTCACATGGTTTTGGCTTTTATTCTGGACATTCATAGGTGAAAAATTAATGAAGCTGGAATTGACCAAAACTAGTGTGGTTGTTTTCTCTTCCTTGTTTTCTTCTCATATTTAATTTGGAAGTAGGTCGTTTGGGTTGAGAAGAATATATGCTTAACCCTCTGATGAGTTTGATCCTACAATAATAGAAATGCACATATGGAAGATGACAATGGAGAAACCTAACACATTGTCTTGTGCTTTCACCCCTCGCTAAATTAAGGAAATAAAACAGAAAAAGACTAAAACGTGTGAAAGTTACCCTCATTCATTTTTTTTCCACGTATCATTATGAAATCTAACTTTCTCATATTTCATCATGCATGCTTGAAAGCTTATGGCCTTTGGTTTTTCTTTTTTAAGAATACTTATCACGGAAAGCAGAAAATAATCTTATGCTTGAATATTCTGAGGGAAATCTTAGTATTTGGATTGCCATAATGTTTTTGTACCAATTTAGTTGACAATTTTTGAAGTTTAAACAACTGGTACTCTTGTAAAGTCAAATCATGCTCAAACTTGTTTATCTTGAACTCAGACGTCTTACAAAAACTACTTCGAAGGTACTATGAATTTGTCCAGCAGCATTGTGAGCAAAATTTGAGGATTGTAAAAGTGGCCCCACTTGTGCCACTTTTTTCTCGACCATGAGGGGATCTTTTTCTTCGTGTTGTATAATTCTGTTGAACGTACCCCGTTGTATTATCAAGTTCTCTACCACAAAAGCTACTAAAGAATCTTAAAATATTAAATTTGTTGCCTGGAGAAAAAAAGGGCGAAAAGGCACCAAAATCATGGTTAAACTGAAAAGGTAGAAACTAGAAAGATATCACTATATGTTTAAGATATAATATAATGGGTTGAACTTCTTCATTGTACTATTTCAACTTTCTTGAACAAAGTAGGCAGGGCTTACTTTGCTACTATTTAAAACCGTATCTTAACAACCAATTAGCACTTGAACTTGCGTCTTTGTTCATTATTCCTTCGTTTCTCATTCTATCTTTTTCTTCCTATTTTCGTTTTATACCCATCAAAATTTGAGCTCTTCTTAATTGTTCTTCTCTGTTCTTTTATACAGAATGGACCACCTTTTCCTAGACCATACCCTTTGAATTATTTGATCTTCTGTGTGAACCTTTGAAA


Gene Sequence:
>Vu_06617(+)
ATGAAACTCATACCTGTAAAACATTCTGCAATGGCTTCCGTTTGGATGTGCCATTTCTTTCTGTTACTGTCCATACTAGATACTTCTTTTATTGCAACTATGGCCAATAATGCAACAGATTCCTACTGGCTTATCAGAATTAAATCAGAGTTGGTAGATCCATCGGGAGCACTTGGCAACTGGTCTCCGACAGCTCATGTCTGCAACTGGAATGGAATAACATGTGCAGTTGATCAGGAATATGTTATTGGCCTGAATCTGTCTGGTTCAGGAATATCCGGTTCCATTTCAGTTGAGTTCAGACACCTCTCTTTTATTCAAACACTTGATTTGTCTTCAAATTCTCTTTCTGGCTACATCCCTTCGGAGCTGGGTCAGCTTCAAAATCTAAGAATATTGCAACTATACTCAAATGATCTCTCTGGGAACATTCCTGCAGAGATAGGTAACATGAGGAAGTTACAAATTCTTAGAATAGGTGACAACATGTTGACTGGTGAAATTCCACCTAGTATTGCCAATATGAGTGAATTGACAGTTTTGGCAATAGGATACTGCCACTTGAACGGAAGCATACCAGTTGGGATCGGTAAATTGAAACATCTAATATCCCTTGATTTAGAAATGAACAGACTCAGTGGCCCCATACCTGAAGAGATTCAAGGCTGTGAAGAGCTCCAAAACTTTGCAGCATCAAACAACATGCTTGAAGGAGACATACCTTTCTCTATGGGGTCGCTTAAATCATTAAAAATTCTGAACCTGGCCAATAACAGTTTGTCTGGGTCAATTCCTCCTGCTTTGAGTCATCTTTCTAACTTGACATACCTGAATTTGCTTGGAAACAAACTACATGGACAAATCCCTTCTGTTCTTAATAGTCTGATTCAGCTGCAGAAGTTGGACTTGTCCAAAAACAACCTCTCTGGATCAATACCTCTCCTTAATGTAGAATTGCAGAGTCTTGAAACTCTTGTTCTGTCTGATAATGCTCTGACTGGTAGCGTTCCAAGTAACTTCTGCCTCAGAGGTTCAAAGCTTCGGGAACTCTTTTTGGCTAGAAACATGCTCTCTGGCAAGTTTCCTTTGGAGTTGCTCAACTGCCCCTCAATCCAACAGTTGGACCTTTCTGATAACAGTTTTGAAGGAGAACTTCCTGCAAGCCTGGACAAACTGAATAACCTCACAGATCTTGTTCTCAACAACAACAGCTTTGTTGGACCTCTCCCTCCTGAAATTGGAAACATTAGTAGCTTAGAGGGTCTTTTCCTATTTGGTAACTTCTTGACAGGTAAAATTCCAACGGAGATTGGAAGGCTGCAGAGATTGAGCACCATTTACCTCTATGACAACCAGATGTCTGGACTCATACCAAGAGAGATAACAAACTGCACAAGCTTAGAGGAAATTGACTTCTTTGGAAATCACTTTACAGGGCCCATTCCAGAGACTATAGGTAAGCTCAAGAAATTAGTTGTTCTGCATCTTAGGCAGAATGATTTGTCTGGTCCGATCCCACCAAGCATGGGGTACTGTAAAAACCTTCAGATATTGGCCTTAGCAGATAACATATTGTCTGGTTCCATTCCATCTACATTCAGTTACCTCTCGGAGCTCACCAAAATTACCCTTTACAACAACTCCTTTGAAGGACCTCTCCCTCATTCACTCTCTTCTCTCAAAAGCCTGAAAATCATCAACTTTTCACACAACAAGTTCAGTGGAAGTTTCTTTCCTCTCACTGGTTCAAATTCTCTAACCATTCTGGACTTGACCAACAACAGCTTCTCAGGTCCCATCCCTTCCACTCTAGCCAATTCTAGAAACCTCAGCCGTCTCAGACTTGGACAAAATTATCTCACTGGAAGCATTCCTTCTGAATTTGACCAACTCACTGAGCTCAATTTTCTTGATTTATCATTCAACAATTTAACAGGAGAGATGCCACCTCAACTCTCAAACTCCAAGAAAATTGAACACATCCTCATGAGTAACAACAGGTTGAGTGGCAAACTACCTGTTTGGTTGGGAAGCTTACAAGAACTTGGTGAGTTAGATCTCTCATACAATAACTTCAGTGGTAGGGTACCTTCTGAGCTTGGTAACTGCTCAAAATTGCTCAAGCTTTCTCTCCATCACAACAATCTGTCCGGTGAAATCCCCTTAGAGCTTGGAAACCTCACTGCCCTCAATGTCTTCAATTTGCAAAGGAACGGATTCTCTGGCCCCATTCCTCCGACAATTCAGCAATGCACAAAACTGTATGAGCTTAGGCTCTCAGAGAACTTTTTAACAGGTACCATACCAGTTGAGCTAGGAGGGCTTGCTGAGTTGCAAGTGATTTTGGACTTGAGTAAAAATCTCTTCACTGGTGAGATTCCACCATCTCTAGGAAACCTCGTGAAGCTAGAAAGACTCAACCTCTCTTTCAACCAACTTGAAGGGAAAGTTCCTCCTTCACTGGGCAAACTCACAAGCCTGCACGTGTTGAATCTCTCAAACAACCATCTTGAAGGCCAGATTCCTCCAACATTTTCAGGATTCCCACTAAGCTCATTCCTGAACAATCACGGCTTCTGTGGCCCACCACTGAGATCATGCTCTGAATCCACGGCACAGGGGAAAATGCAGCTATCAAACACACAAGTGGCAGCAATCATTGTGGCCATTGTGTTTACTTCCACAGTGATATGCTTAGTGATGTTGTACATCATGCTCAGGATCTGGTGCAACTGGAGAAAAGTTGCCATTTCGAGTGCAGAAGGTGGCACTGTTGCCCATAAGGCAAGAAATGGAGAGTATTGGAATATGAATTCATTTGGGTTGATTCCTTCACCAGATAAGCAGAATTCAGCAGCATCTTCCTTCTATAATCTTAAAATGGAGACCATGGAAAATGCACATATGTAA

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