Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_06462 LG1 95352535 95353611 PREDICTED: transcription factor TCP9-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of cell size, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, root development, negative regulation of leaf senescence, negative regulation of leaf senescence, regulation of transcription, DNA-templated, root development
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, cytoplasm, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, sequence-specific DNA binding, transcription cis-regulatory region binding, protein binding, protein binding, protein binding, transcription cis-regulatory region binding, protein binding, protein binding, protein binding
SNP Position Effect Amino acid change
G/T 95352815 missense_variant p.Pro266His
G/T 95352983 missense_variant p.Pro210Gln
T/A 95353059 stop_gained p.Lys185*
A/G 95353065 missense_variant p.Ser183Pro
C/T 95353164 missense_variant p.Gly150Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_06462.1
MASNQEEQDMDQDQDGGTTDLSTSDVDADKALSQSTNLNGFQQHFQDKAIAFQALPLKNEPTDSDPDPDPNAPNPPPPLPTMQLQLKSPRRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHSEQAIIEATGTGTVPAIAVSVGGALKIPTTSSANQNRGEEGASNKKRKRPSNSEFVDINDTVSQTSGLAPVQVPQGLVPVWAVSNPSMVVPANTFWMIPQAATTRNPLGGVTGPSSHQPQIWALSPSVLNVAARPITPVVTTTNIPEAWSVMTACCNGSNSAAVSTSTVGARSSTNSSMAPSVPSSATKTQTLRDFSLQIYDKQELQFLGRSGPNANP*


CDS Sequence:
>Vu_06462.1
ATGGCGTCCAATCAGGAGGAGCAGGACATGGATCAAGACCAAGATGGAGGAACAACGGACCTCAGCACCAGCGATGTCGACGCAGACAAAGCCTTATCCCAAAGCACCAACCTCAATGGATTTCAACAACACTTCCAAGACAAAGCCATAGCCTTCCAAGCCTTGCCGCTCAAAAACGAGCCAACGGATTCCGACCCTGACCCGGACCCCAACGCGCCCAATCCTCCTCCACCGCTGCCGACGATGCAGCTTCAGCTCAAATCGCCCAGGCGCTCCTCCACCAAGGACCGCCACACCAAAGTCGAAGGCCGAGGCCGCAGGATCCGAATACCCGCCACCTGCGCCGCCCGGATCTTCCAACTGACCCGAGAGCTGGGCCACAAATCCGACGGCGAAACCGTCCGGTGGCTCCTCGAGCACTCCGAGCAGGCCATCATAGAAGCCACCGGCACAGGCACGGTGCCAGCCATCGCGGTCTCTGTCGGCGGCGCGCTCAAAATCCCAACGACCTCGAGCGCCAACCAAAACAGGGGCGAAGAAGGCGCGTCTAACAAGAAACGGAAACGCCCTTCTAACAGCGAGTTCGTGGACATAAACGATACCGTTTCGCAGACGTCCGGTCTGGCCCCGGTTCAAGTACCCCAAGGACTGGTCCCGGTCTGGGCCGTTAGTAACCCCAGCATGGTTGTCCCCGCCAACACGTTCTGGATGATCCCGCAGGCCGCGACCACCAGGAACCCCTTGGGCGGAGTTACGGGCCCCTCCAGCCACCAGCCTCAGATATGGGCCTTATCTCCCTCCGTGTTGAACGTGGCGGCCAGGCCCATAACGCCTGTCGTGACAACAACGAATATTCCAGAAGCTTGGTCCGTCATGACGGCCTGCTGTAACGGTTCAAACTCAGCAGCGGTGAGTACGAGCACTGTGGGAGCTAGGTCGTCTACCAATTCCAGCATGGCCCCTAGCGTTCCTTCCAGCGCCACCAAGACTCAGACGCTGAGGGATTTTTCCCTCCAAATTTACGACAAGCAAGAGTTGCAGTTCTTGGGCCGCTCTGGCCCAAACGCCAACCCATGA


Promoter Sequence:
>Vu_06462::LG1:95353611-95355611(-)
GGTCGTAACACGTGTCAGCCCATGGTTCCTTCACAGGTTTGATGAAATTACAATAGATAAGTTTTCCACTTGGAGATTTATACCTGGACCCCACCCAGCCCCTACAAAATTCCTTATTAATACTCCTACAGCTTATTGTCCTATGCAACTAACTACCCTTTCAAAATAATGATAAATACAATATAATGGATTCTTATCAAATTTACATCTACACGTAACAACAACTCCCAATTATCACACAATTTCATCACCAACAATATTATCTTTTCATTTCAGATTTTCTAATATTCTTGTACAACCATCTCAACCCATATAAAGGGTACAAAATAAATAATTAAGGTTTAATTTATTTTAGGTATCAAAAGTAAATATATATATATATATATATATATATATATATATATATATATATATATATAATGTAGTTTTCTTTTATAAAATAAAAAATTTAATTAACTTTTTTAAGTATGTAATAAATTTAGGTGTTTTTAATATGACTGTTTTTATTTGATTTTTTCATACATTGTGTAACAATATACCATATATATGGCATTGTTCATCATAAAAAAAAATGTGATATTTTGAGTTAATTAAAATGATATTATATTTAATATAAAATGATAAGTAACTTAAATTATCACCAAATGATTATTTCAGTTGATGAAATATTTATTATTTTTGATAAAAAAAAATCATTAATATATTATTTTATATTAATTACAGAAACATTGTATTTCTTATCACATAAAAATAATGGATAAAATATAATCAGATCATCGTCTTAGGATTGAACTGAAAAATATAACAATTTTTAGCAATCAAGGAATAAAAATTAATAAATATTGAATTTAAAATATCCAAAATTATTATACACTTAAAATTTAATTAAATTTAAATAATAGTAAGTGAAATTAATCTCCAAAAATTACTTTACAAGTATGGTACAAAAATCACACAATTTAAATCATAAAGTTTATTATGAATACTTGCAATTACAATTTAAGTTAATCAATTTGGCATACTGTGATTCTGTTTTATTGGATTGATTGCTTTCTACAAAACATATGTGATCTTTTAAATAAATTATTATACTGTTTTTTTATTTAATAACAATATAAAAGACTATTTGCATGATAACTGTATATACTATTTATACATACGGCAATATTTGATGTTAGTTTGGAAAAATATATAACATGTTCTCCTATATTATAAAATATATGAGATGAGATTTCTTTTTATGAAAAAACATCTTTTTATCTCTTATTTATAAAATAAAAACAATACATTGTAAATAAAAATATAAAGTAGACAGTTTACTTTTTAAAAACTAAAAGTAAATGTCAATATATTTCTGTTAATCAAAAATATATTTTGTTGAATTATTATAACATTATTAAAGAGATAACAAAATATTATAAACTCAGAGTTAATTGATTCATATATATGATAGAATAAAAGTATTATAGAGAGTAAAAAATGATAAACCACAGTCAGATTTAGTATTTTGTGAGCTAATGATATATTATAATATAAGTTGTATTTAAATAACAGTCTGATTTAGTATTTGGTGAGCTAATGATATATTATAATATAAGTTGTATTGAAATAACAGTGTTTTTTTTTATCAAAAGTAGATATAAATTTTTAATTTATATTTTTTGAAGTTATAAAACCTTAAGTAAATTATGTAAAATTAGATTTAATTAAAAAGTTTATCCAAGGATATTAAGAATAATGTCTTTAACATTGGAGAGATGTTAGTGTTTGAAGTAGAAATATCTTTACACTTTTTATCCGTGTATTTAATTAATGATTATTTATATGACATTCCATTTGTTGTAGTGCATTTTGGTGTTTTAGCCACCACACCTAAAACATCCCTCTCTGCTCCTTCCTTGAATTTCACTGAAGCCTACCCAACAAAAAAAAAATTAATCTTTTGTATCCCCAGTCTTCCAAATCTCTCTGGATTAATCTTCCAATTCAAAATCAGTGAA


Gene Sequence:
>Vu_06462(-)
ATGGCGTCCAATCAGGAGGAGCAGGACATGGATCAAGACCAAGATGGAGGAACAACGGACCTCAGCACCAGCGATGTCGACGCAGACAAAGCCTTATCCCAAAGCACCAACCTCAATGGATTTCAACAACACTTCCAAGACAAAGCCATAGCCTTCCAAGCCTTGCCGCTCAAAAACGAGCCAACGGATTCCGACCCTGACCCGGACCCCAACGCGCCCAATCCTCCTCCACCGCTGCCGACGATGCAGCTTCAGCTCAAATCGCCCAGGCGCTCCTCCACCAAGGACCGCCACACCAAAGTCGAAGGCCGAGGCCGCAGGATCCGAATACCCGCCACCTGCGCCGCCCGGATCTTCCAACTGACCCGAGAGCTGGGCCACAAATCCGACGGCGAAACCGTCCGGTGGCTCCTCGAGCACTCCGAGCAGGCCATCATAGAAGCCACCGGCACAGGCACGGTGCCAGCCATCGCGGTCTCTGTCGGCGGCGCGCTCAAAATCCCAACGACCTCGAGCGCCAACCAAAACAGGGGCGAAGAAGGCGCGTCTAACAAGAAACGGAAACGCCCTTCTAACAGCGAGTTCGTGGACATAAACGATACCGTTTCGCAGACGTCCGGTCTGGCCCCGGTTCAAGTACCCCAAGGACTGGTCCCGGTCTGGGCCGTTAGTAACCCCAGCATGGTTGTCCCCGCCAACACGTTCTGGATGATCCCGCAGGCCGCGACCACCAGGAACCCCTTGGGCGGAGTTACGGGCCCCTCCAGCCACCAGCCTCAGATATGGGCCTTATCTCCCTCCGTGTTGAACGTGGCGGCCAGGCCCATAACGCCTGTCGTGACAACAACGAATATTCCAGAAGCTTGGTCCGTCATGACGGCCTGCTGTAACGGTTCAAACTCAGCAGCGGTGAGTACGAGCACTGTGGGAGCTAGGTCGTCTACCAATTCCAGCATGGCCCCTAGCGTTCCTTCCAGCGCCACCAAGACTCAGACGCTGAGGGATTTTTCCCTCCAAATTTACGACAAGCAAGAGTTGCAGTTCTTGGGCCGCTCTGGCCCAAACGCCAACCCATGA