Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_06449 LG1 95218219 95220230 PREDICTED: protein ODORANT1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of secondary cell wall biogenesis, regulation of phenylpropanoid metabolic process, regulation of secondary cell wall biogenesis, L-phenylalanine biosynthetic process, positive regulation of transcription, DNA-templated, cell differentiation, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, regulation of phenylpropanoid metabolic process, regulation of phenylpropanoid metabolic process, regulation of lignin biosynthetic process, regulation of lignin biosynthetic process, positive regulation of transcription, DNA-templated, regulation of lignin biosynthetic process, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, L-phenylalanine biosynthetic process, regulation of lignin biosynthetic process, L-phenylalanine biosynthetic process, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
T/G 95218295 3_prime_UTR_variant
C/T 95218312 3_prime_UTR_variant
G/A 95218698 missense_variant p.Thr224Met
G/T 95218946 synonymous_variant p.Ser141Ser
A/C 95219209 intron_variant
A/T 95219379 intron_variant
C/T 95219383 intron_variant
G/A 95219587 intron_variant
T/C 95219801 intron_variant
T/G 95219806 intron_variant
A/T 95219985 stop_gained p.Cys49*
A/T 95220204 5_prime_UTR_premature_start_codon_gain_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_06449.1
MGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTQAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLVKQAASQDSSPSPSEHLPQPENNLDQVKETDGVLNSEENSSSSQAENSSGDDSLLLDSICSDDSLLNTLWLDETPLMEALWDTTPKLENNTNSNTGLVPSWEDNCAWLLDCQDFGIHDFGFNCFNEIESNALHTIEMKDEKH*


CDS Sequence:
>Vu_06449.1
ATGGGGAGGCAACCCTGCTGTGACAAACTTGGGGTGAAGAAAGGTCCATGGACTGCAGAGGAAGACAAGAAGCTCATCAACTTCATTCTCACCAATGGCCAGTGTTGTTGGCGTGCTGTGCCAAAGCTTGCTGGCCTTAGGCGTTGTGGCAAGAGTTGTCGCCTTCGTTGGACTAATTATCTTCGCCCAGACTTGAAGAGAGGACTCCTCACACAAGCAGAGGAGCAACTTGTTATTGATCTCCATGCCCGTCTTGGCAACAGGTGGTCCAAAATTGCTGCCAGGTTACCCGGAAGAACGGACAACGAGATTAAAAACCATTGGAACACACATATCAAGAAAAAACTCCTGAAAATGGGTATTGATCCCGTTACTCATGAACCTCTCGTTAAACAAGCAGCATCGCAGGATAGTTCACCCTCCCCCTCAGAGCATTTGCCACAGCCTGAGAATAACCTCGATCAGGTGAAGGAAACTGATGGGGTTCTCAACTCAGAGGAGAATTCAAGTTCATCCCAAGCTGAAAACTCTTCTGGGGATGATTCACTTTTGCTAGATAGCATTTGCAGTGACGATTCTCTGTTAAACACCCTGTGGCTGGATGAAACTCCTCTGATGGAAGCATTATGGGACACAACACCCAAACTAGAGAATAATACTAACAGTAACACGGGTTTGGTACCATCTTGGGAGGACAACTGTGCTTGGTTATTGGACTGTCAGGACTTCGGTATTCATGATTTTGGGTTTAACTGTTTCAACGAGATAGAGTCAAATGCACTGCATACCATAGAAATGAAGGACGAGAAGCATTAA


Promoter Sequence:
>Vu_06449::LG1:95220230-95222230(-)
CTCACGAATCCAAATATCTGTTTTAAAAAAAAATCCAAGATAAAACACATTGCAAATGCAACTTACTTTTTAAAGTTGCAAATCCATTATGAATCATGTATTTAATTGATTATGCACCTTCAAATATTACATATAGTTATGGTAGGGTTACATGATTGATCATGGATGATGAGTACTAGAGTATATAGATTTAATTAAAATATATTTGATTATACACTCGTTTTAAACGCGAAACCGATGAAAATGTGATTCTACGGAAAAGGACCTTTATATTTAATATAGAATTAATCAACTTAATATTTATTTACTTTCATATATAAATTATTATCTACTTTAAAATGATATAGTGCTTACAAGTGGTATAAACCAAATATCTCTTGACTAGGATTCAGCGACGTGTATAATTATGCCAATTACTTGTTTGTGAGTATGTTACTCTTTTATTAATGCTTAAGTAAACTGTAGAAGTGCGTTTGTATTAAAAAAAAGGAAACGTATTTGAATGAATGCCTAATCGATGAACCAATCTGAGACGAAGCTGATCTGAAAATGGAACGATCTAGAAATAATCTGGCGTAGGTGGAAGAAGTTCTGTCCAGTTCGTGTCAAAGATACCCAACCAGGATAGTCATCGAACTTCATACATATTCTCCAGCTAATCATATCTAGCTTGTGAAATTAATATGTTGAATATGATCTATTCCAGATTCAGTAACGAATTAACCATTCTATTACATAAAGTATGGTATACATAAAATAACTCACGAGCTTGTACATAATCATTTTGATTTTGAGATGGTTTTTCATGACCGTATCAGGTTAGGCTTTTCTCTTCCGTGGTTCAGTTTTAACAAGGAATCGTATCTGTCTATCTTCCTTCCTCTGTTCACGTTTTATTGTTTATTCCCAAATACGACTCGAAGCGCCCTCTATCTGTTCGATGAAATAAAAGTAGACGGGAAAATGTAAGTAGTTGACCCAAATTCTATCTGATCAGAGAAATTGAAAGGAAATAACCGTTGATTTATACATCATTAGTCCATTATTCCTTATCGTTTGCATTTTGCTTCAACTGGTAGATGCTGCAACCGAACACTACCTAAATCCATCAATGTTTTCTCATTGGGATGTCAATATCTATCCCTCTTAACAAATATGCAAGATCTATATCCTCTTCGTAGGTGTGACTTGTAAAATTATTCTTGAGCACCTACAGTCATAATTCCAAATATGCTGAAGTCGTGGCCTATTGGACCGGTTCTACAATTGGTTACGCATATAAATGTTTGTCTGGATAAATTTTCGTAACTTGCATTAATGATAGTCAGTTCCATGGACAGGAGTGAGGCGGGAGTTGTAACTTACTGGGGAGAAAACAAAGTTGTGGCTTTGAAATCTCCGGAGATCGTTGTCCACTCTAGTACTTCAGGAATGTCTCTGAACTCTTAGAATCAAGGAAACCTGGTTGCTCCAACCAGTCCCTATTTGATTCGATGATCCTGCAGCGTTGGATCGGTATTCTTTGATCACATCAAAGAACTAGAGTTTCAAGACCTATAGCAATCGCCCTCACCGTATCATAAACTGAAGCCAAGGGACACGTAAACGTGGTGATGACGAAATGGTGGAGTAAGAGTGAAATCAGGGCAGTGGATTTGCATTTCGTAATGGAAAATTTTTTAAGAGGTATAATTATTTTACACATTATTTTAATACTTGTTTGGGATGCTTACATATAGTTCTGCCTTTGGGTCACCCATCTTTCAGCGTCACCCATTTGTGTAGCTAAAAACACCAGAAAACCCCATATTAGTTCCCACGTAGCTTTCACAACCCATGGTGGAGCCCTCAACCTTCTCCTGTTTAACCCTGCCTGTTTAGTTCCCCCTGTTTTTTAATTTTCTCTCTATGCATGATTTTATTGCACATATATGTAATTAATAATTTAGGCAAGAAAGGGAGAGGGCTTTATATAAAGGTGGGTGGGGAGTGGGGCTTTT


Gene Sequence:
>Vu_06449(-)
GGGTCATTACTCATTACAAGCTTGTGTTGGTAAGACTTTTGCATTAGTGTGGGAAATTGCATTGATTAGCTTGGTAGTGTTGTTGTTTGTGCAAGTGGTATGGGGAGGCAACCCTGCTGTGACAAACTTGGGGTGAAGAAAGGTCCATGGACTGCAGAGGAAGACAAGAAGCTCATCAACTTCATTCTCACCAATGGCCAGTGTTGTTGGCGTGCTGTGCCAAAGCTTGCTGGCCTTAGGCGTTGTGGCAAGAGTTGTCGCCTTCGTTGGACTAATTATCTTCGCCCAGACTTGAAGAGAGGACTCCTCACACAAGCAGAGGAGCAACTTGTTATTGATCTCCATGCCCGTCTTGGCAACAGGTATTTTATGTTTCACAATGCATTCTCTTTCTCAACAATTCTTACATCACCACACTTTTTACAACTAAGATCATTCATAAATCAAAACCTCAAGATAATACTAAACTGCTTTTACCATGGATTTTGTTAGCTTATTTATTATTTTATTACATCTTCGACCGTTCCTGTACACAATGCATTCACCAAGAATATCATGGATTTTCCCTATGTTCAACAGCTAAAAGATCCCATTTTTTCCTAAAGTATATTGGAAGGCACTTAGTCCTTAACTACTGTGACTTCAAGTCTAAACCATTAATAATGTTGAAGAAGGCAACGCATTTCAAACCTTGTTTTCAAACAAAAGGCTACTTGAGGCTGAAGCAATTGAATCCTTGCCTGGTTTACTAGTAGATATGTTTTAACATATTTATAACATTTCAACATAGTAATAGCATCTTTCTATTCTCAAACTCTCAAACACTATTACTCTGCGTGGTATATGTGAATTGTTCAGACATGCATATCAAATGGTAGGTAAGAATTTGGAAAGCAGCACTTCATTGACCTGCGTAATTAATGTTCAAGCTAAAATGTTACTCCATCGTTGGAACTGATATTCATATTGAAGAATACTAAAACTTAGTCATGAGTTACAATGCAAATTACAAGATAAATGATGATGATCCAGTTTAAGCTGTTGGTATTTCCTAAAGTAATTACATGTTGGATATGATTGGCACGTGTATAATGAATTTTGATATACGGTTGATTGGTATCTCAGGTGGTCCAAAATTGCTGCCAGGTTACCCGGAAGAACGGACAACGAGATTAAAAACCATTGGAACACACATATCAAGAAAAAACTCCTGAAAATGGGTATTGATCCCGTTACTCATGAACCTCTCGTTAAACAAGCAGCATCGCAGGATAGTTCACCCTCCCCCTCAGAGCATTTGCCACAGCCTGAGAATAACCTCGATCAGGTGAAGGAAACTGATGGGGTTCTCAACTCAGAGGAGAATTCAAGTTCATCCCAAGCTGAAAACTCTTCTGGGGATGATTCACTTTTGCTAGATAGCATTTGCAGTGACGATTCTCTGTTAAACACCCTGTGGCTGGATGAAACTCCTCTGATGGAAGCATTATGGGACACAACACCCAAACTAGAGAATAATACTAACAGTAACACGGGTTTGGTACCATCTTGGGAGGACAACTGTGCTTGGTTATTGGACTGTCAGGACTTCGGTATTCATGATTTTGGGTTTAACTGTTTCAACGAGATAGAGTCAAATGCACTGCATACCATAGAAATGAAGGACGAGAAGCATTAACTACACGCATGCAGTAATAGATCTGGTGAAGGGAATTAATTGTCTACGAAACAAACAATCAGGGTAAAATATCAAATCTATTAATGTGACCAAATACCACGGGCTCAAATTTATGTTCTTGGTGTTCAATTTTATCTACCTAGTATTTTGCTGAATGTTCTCGGAAGGTGGAAGGTGAACGTTTCCTCTTCTGAGGTTCCTCGCCAACCAAATCACAAAATTGATGGCAAACCAAAACCAGATCATCAAAATGCCACAGTACATACTTACATGAGCATTTTCAACTCAGTTGTTTAGAAAAAGAATTATCAATAAAAACATTATTTTAATATAG